Cla004544 (gene) Watermelon (97103) v1

Overview
NameCla004544
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetrotransposon protein (AHRD V1 ***- E5GBB2_CUCME)
LocationChr10 : 10638814 .. 10639376 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCAACAAAAATTTCTAGGGTGTTCCATACAAGTAAGCCCAAATCTAGAGTCCAAGGTGAGGACGTTGAAGAGACAATACAATGCGGTCCCTAAAATGTTGGGCCCAGGGTGTGGTGGGTTTGGTTGGAACGCGGAGCAGAAATGTATCGACTATGAGCCTGAGATATTTGACGCATGCATCAAGGTAATGAACACATTTACTATTTGTTTTATATTATTTTAAATATATTTTAGCCAAAACATAACACATTTCATCTGATACAGAGTCATCCGAGTGCAAAAGAACTCAGGCATAAGTCATTTTCAATCTATGATGACCTGATGATTGTATTTGGCAAAGACAGAGCAACAAGGAGTCGTGCCACTACCACTGCTGAGATCGGATCTAAACCTGTAGTGGAAGAGGAGAACGACGACATTTTAAATAACCAATCCCCAGACTTTGATAATTTCTACATTCCTGATCCACCATTCGCCGACTTGCCCACATCAGAAGACCTTAAGAGGGGACCCGTTCATCCCTTTTCTTTCAAAAAGATTCTCCTGGAATTGGAATAG

mRNA sequence

ATGATGCAACAAAAATTTCTAGGGTGTTCCATACAAGTAAGCCCAAATCTAGAGTCCAAGGTGAGGACGTTGAAGAGACAATACAATGCGGTCCCTAAAATGTTGGGCCCAGGGTGTGGTGGGTTTGGTTGGAACGCGGAGCAGAAATGTATCGACTATGAGCCTGAGATATTTGACGCATGCATCAAGAGTCATCCGAGTGCAAAAGAACTCAGGCATAAGTCATTTTCAATCTATGATGACCTGATGATTGTATTTGGCAAAGACAGAGCAACAAGGAGTCGTGCCACTACCACTGCTGAGATCGGATCTAAACCTGTAGTGGAAGAGGAGAACGACGACATTTTAAATAACCAATCCCCAGACTTTGATAATTTCTACATTCCTGATCCACCATTCGCCGACTTGCCCACATCAGAAGACCTTAAGAGGGGACCCGTTCATCCCTTTTCTTTCAAAAAGATTCTCCTGGAATTGGAATAG

Coding sequence (CDS)

ATGATGCAACAAAAATTTCTAGGGTGTTCCATACAAGTAAGCCCAAATCTAGAGTCCAAGGTGAGGACGTTGAAGAGACAATACAATGCGGTCCCTAAAATGTTGGGCCCAGGGTGTGGTGGGTTTGGTTGGAACGCGGAGCAGAAATGTATCGACTATGAGCCTGAGATATTTGACGCATGCATCAAGAGTCATCCGAGTGCAAAAGAACTCAGGCATAAGTCATTTTCAATCTATGATGACCTGATGATTGTATTTGGCAAAGACAGAGCAACAAGGAGTCGTGCCACTACCACTGCTGAGATCGGATCTAAACCTGTAGTGGAAGAGGAGAACGACGACATTTTAAATAACCAATCCCCAGACTTTGATAATTTCTACATTCCTGATCCACCATTCGCCGACTTGCCCACATCAGAAGACCTTAAGAGGGGACCCGTTCATCCCTTTTCTTTCAAAAAGATTCTCCTGGAATTGGAATAG

Protein sequence

MMQQKFLGCSIQVSPNLESKVRTLKRQYNAVPKMLGPGCGGFGWNAEQKCIDYEPEIFDACIKSHPSAKELRHKSFSIYDDLMIVFGKDRATRSRATTTAEIGSKPVVEEENDDILNNQSPDFDNFYIPDPPFADLPTSEDLKRGPVHPFSFKKILLELE
Homology
[Close]
BLAST of Cla004544 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 49/104 (47.12%), Postives = 71/104 (68.27%), Query Frame = 1 

Query: 1   MMQQKFLGCSIQVSPNLESKVRTLKRQYNAVPKMLGPGCGGFGWNAEQKCIDYEPEIFDA 60
           MM +K  GC ++ +  ++ +++TLKR + A+ +MLGP C GFGWN E+KCI  E E+FD 
Sbjct: 368 MMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDN 427

Query: 61  CIKSHPSAKELRHKSFSIYDDLMIVFGKDRATRSRATTTAEIGS 105
            ++S P+AK L +  F  YD+L  VFG+DRAT   A T A++GS
Sbjct: 428 WVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGS 471

[Close]
BLAST of Cla004544 vs. TrEMBL
Match: A0A162AHN3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-19
Identity = 49/113 (43.36%), Postives = 73/113 (64.60%), Query Frame = 1 

Query: 1   MMQQKFLGCSIQVSPNLESKVRTLKRQYNAVPKMLGPGCGGFGWNAEQKCIDYEPEIFDA 60
           +M +   GC ++  P++ES+VR L++Q+ A+ +M GP C GFGWN  +K I  E  IF+ 
Sbjct: 62  IMGELLPGCGMKARPHIESRVRLLRKQFFAIEEMRGPNCSGFGWNELEKSITCEKSIFEE 121

Query: 61  CIKSHPSAKELRHKSFSIYDDLMIVFGKDRATRSRATTTAEIGSKPVVEEEND 114
            +KSHP+AK LR+KSF  YD+L  VFGKDRA      + A+   +   +EE++
Sbjct: 122 WLKSHPNAKGLRNKSFPFYDELAQVFGKDRANGEGVESPADAVEEIANDEESN 174

[Close]
BLAST of Cla004544 vs. TrEMBL
Match: A0A161XV48_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 1 

Query: 8   GCSIQVSPNLESKVRTLKRQYNAVPKMLGPGCGGFGWNAEQKCIDYEPEIFDACIKSHPS 67
           GC ++  P++ES+VR  ++QY A+ +M GP C GFGWN   K I  E  IF+  +KSHP+
Sbjct: 67  GCGMKARPHIESRVRLWRKQYFAIEEMRGPNCSGFGWNELDKSITCEKSIFEDWLKSHPN 126

Query: 68  AKELRHKSFSIYDDLMIVFGKDRATRSRATTTAEIGSKPVVEEEN 113
           AK LR+KSF  YD+L  VFGKDRA      + A+   +   EEEN
Sbjct: 127 AKGLRNKSFPYYDELSQVFGKDRANGECVESPADAVEEIANEEEN 171

[Close]
BLAST of Cla004544 vs. TrEMBL
Match: I3SNR9_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-19
Identity = 59/142 (41.55%), Postives = 83/142 (58.45%), Query Frame = 1 

Query: 2   MQQKFLGCSIQVSPNLESKVRTLKRQYNAVPKMLGPGCGGFGWNAEQKCIDYEPEIFDAC 61
           +  KF GC+++ +P++ES+V+ LKRQY+A+  MLGPG  GFGW+  +K I  E EI+   
Sbjct: 56  IHNKFPGCTLKATPHIESRVKLLKRQYSAIKDMLGPGASGFGWDDAKKMIKVEKEIYRQW 115

Query: 62  IKSHPSAKELRHKSFSIYDDLMIVFGKDRA----TRSRATTTAEIGSKPV--VEEENDDI 121
            KSHP+A  L +K F  YD L IVFGKD+A    T      T E+  + V   +E    I
Sbjct: 116 CKSHPTAVGLYNKPFPHYDSLDIVFGKDKAVDTVTEDIIDMTIEMEKENVQSTQEGGSGI 175

Query: 122 LNNQSPDFDNF--YIPDPPFAD 136
             N   D +NF   +P+ P A+
Sbjct: 176 NLNDDDDDENFESQMPETPTAN 197

[Close]
BLAST of Cla004544 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.7e-19
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = 1 

Query: 1   MMQQKFLGCSIQVSPNLESKVRTLKRQYNAVPKMLGPGCGGFGWNAEQKCIDYEPEIFDA 60
           MM  K  G +I  S  ++S+++ +KR ++A+ +M GP C GFGWN E+KCI  E E+FD 
Sbjct: 406 MMAFKIPGSNIHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDD 465

Query: 61  CIKSHPSAKELRHKSFSIYDDLMIVFGKDRATRSRATTTAEIGS 105
              SHP+AK L +KSF  YD+L  VFGKDRAT  RA + A+IGS
Sbjct: 466 W--SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGS 506

[Close]
BLAST of Cla004544 vs. NCBI nr
Match: gi|659111294|ref|XP_008455678.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 2.3e-25
Identity = 61/142 (42.96%), Postives = 92/142 (64.79%), Query Frame = 1 

Query: 1   MMQQKFLGCSIQVSPNLESKVRTLKRQYNAVPKMLGPGCGGFGWNAEQKCIDYEPEIFDA 60
           +M++K    +IQV+ NLES+V+ LK+QY A+ KM+GP C  FGWN E+KCI+ E  +FD 
Sbjct: 84  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 143

Query: 61  CIKSHPSAKELRHKSFSIYDDLMIVFGKDRATRSRATTTAEIGSKPVVEEENDDILNNQS 120
            +K HP+A+ L +K F+ + DL IVFG+D+AT  R     E+ S+   + E DD+  N  
Sbjct: 144 WVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDIN-- 203

Query: 121 PDFDNFYIPDPPFADLPTSEDL 143
              ++F IP+P   + P+ ED+
Sbjct: 204 --LEDFDIPNPHGLEPPSGEDM 221

[Close]
BLAST of Cla004544 vs. NCBI nr
Match: gi|659111565|ref|XP_008455793.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-24
Identity = 60/123 (48.78%), Postives = 81/123 (65.85%), Query Frame = 1 

Query: 2   MQQKFLGCSIQVSPNLESKVRTLKRQYNAVPKMLGPGCGGFGWNAEQKCIDYEPEIFDAC 61
           M +K  G +IQ SP ++ +V++LK+ Y+A+ +M GP C GFGWN E +CI  E ++FD+ 
Sbjct: 1   MAEKLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSW 60

Query: 62  IKSHPSAKELRHKSFSIYDDLMIVFGKDRATRSRATTTAEIGSKPVVEEENDDILNNQSP 121
           +KSHP+ K L HKSF  YDDL  VFGKDRAT +R+ T  ++GS  V    ND I    S 
Sbjct: 61  VKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSN-VPNMFNDTIPLGDSH 120

Query: 122 DFD 125
           D D
Sbjct: 121 DED 122

[Close]
BLAST of Cla004544 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 9.8e-24
Identity = 62/124 (50.00%), Postives = 80/124 (64.52%), Query Frame = 1 

Query: 1   MMQQKFLGCSIQVSPNLESKVRTLKRQYNAVPKMLGPGCGGFGWNAEQKCIDYEPEIFDA 60
           MM +K  G +IQ S  ++  V++LK+ Y+A+ +M GP C GFGWN E +CI  E ++FD+
Sbjct: 51  MMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDS 110

Query: 61  CIKSHPSAKELRHKSFSIYDDLMIVFGKDRATRSRATTTAEIGSKPVVEEENDDILNNQS 120
            IKSHP+AK L HKSF  YDDL  VFGKDRAT +R+ T   +GS  V    ND I    S
Sbjct: 111 WIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSN-VSNMFNDTIPLGDS 170

Query: 121 PDFD 125
            D D
Sbjct: 171 HDED 173

[Close]
BLAST of Cla004544 vs. NCBI nr
Match: gi|659133916|ref|XP_008466949.1| (PREDICTED: uncharacterized protein At2g29880-like, partial [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-22
Identity = 62/143 (43.36%), Postives = 83/143 (58.04%), Query Frame = 1 

Query: 1   MMQQKFLGCSIQVSPNLESKVRTLKRQYNAVPKMLGPGCGGFGWNAEQKCIDYEPEIFDA 60
           MM  K  G +I  S  ++S+++ +KR ++A+ +M GP C GFGWN E+KCI  E E+FD 
Sbjct: 47  MMAFKIPGSNIHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDD 106

Query: 61  CIKSHPSAKELRHKSFSIYDDLMIVFGKDRATRSRATTTAEIGSKPVVEEENDDILNNQS 120
            +KSHP+AK L +KSF  YD+L  VFGKDRAT  RA + A+IGS             N  
Sbjct: 107 WVKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGS-------------NDP 166

Query: 121 PDFDNFYIPDPPFADLPTSEDLK 144
           P +D F     P  D P    L+
Sbjct: 167 PGYDAFAADAMPDTDFPPMYSLR 175

[Close]
BLAST of Cla004544 vs. NCBI nr
Match: gi|659111306|ref|XP_008455685.1| (PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 3.2e-22
Identity = 59/124 (47.58%), Postives = 81/124 (65.32%), Query Frame = 1 

Query: 1   MMQQKFLGCSIQVSPNLESKVRTLKRQYNAVPKMLGPGCGGFGWNAEQKCIDYEPEIFDA 60
           MM  K  GC+I  S  ++S+++ +KR ++A+ +M GP C GFGWN EQKCI  E E+FD 
Sbjct: 225 MMAFKIPGCNIHAS-TIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTEKEVFDD 284

Query: 61  CIKSHPSAKELRHKSFSIYDDLMIVFGKDRATRSRATTTAEIGSKPVVEEENDDILNNQS 120
            +KSHP AK L +KSF  YD+ + VFGKDRAT  RA + A++GS   V    D  + + +
Sbjct: 285 WVKSHPVAKGLLNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPV--GYDAFVADAT 344

Query: 121 PDFD 125
           PD D
Sbjct: 345 PDTD 345

The following BLAST results are available for this feature:
BLAST of Cla004544 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME3.2e-2147.12Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A162AHN3_DAUCA2.3e-1943.36Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1[more]
A0A161XV48_DAUCA3.0e-1947.62Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1[more]
I3SNR9_MEDTR3.9e-1941.55Uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
E5GCB5_CUCME8.7e-1950.96Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla004544 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111294|ref|XP_008455678.1|2.3e-2542.96PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|659111565|ref|XP_008455793.1|1.5e-2448.78PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|659082641|ref|XP_008441954.1|9.8e-2450.00PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|659133916|ref|XP_008466949.1|2.4e-2243.36PREDICTED: uncharacterized protein At2g29880-like, partial [Cucumis melo][more]
gi|659111306|ref|XP_008455685.1|3.2e-2247.58PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004544Cla004544.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 2..135
score: 1.6