Cla004504 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004504
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RNA pyrophosphohydrolase (AHRD V1 ***- F5LYJ6_RHOSH); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain
Location	Chr7 : 12373117 .. 12375115 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCTCTTCCTTCTGGTTACCGCCCCAACGTTGGCGTTTGTCTCATCAACTCTGATAATCAGGTTTTCATTCTTCTTCTTCTTCTTTTTTTTTTTTTTTTTTATATACAAATTCTTCCTCAAACATCAATATAGATTCTATCCCTATCTGTTTCTATGGTTTTTTGAGAGATGGGCTTTCCTTTTCTTTTGTTTTGCTTTATGATCTTCAAGAATTAGTGATGAATTGATTGCCCATTTCTCTGCTAGATCTACACTCATGGGTGAATTTTGTTTTCCTTTTCTGGGTTTTGTTTGTTTGTTTGTTTTAATGTAATGTTGCAATTGTGAGAGTGGAGCTATGCTTATGTTGAGTGTTTGTTAAGATTTGAGGATTTGAAGGTGTTGTAGTTTATTTTGTTTTGGAGTTCTTTTGTTGTTTTTGTTATTGAGAAAAAGATTGTAATCTAATCAGATTTATTATGCAGGTTTTTGTTGCTTCTAGACTGAATGTTCCAGGAGCATGGCAGATGCCTCAGGTGATTTTGAAATTTCCTCTGTTCTTTTTCTCTGCTTCATTTTGGATTTTGTTTCATTGCTCAAAATCTCTAAATGGCTCATTTTATTATGTTCATGGGAACATGTTGTTGCAAATTCTGTTCAATTATATGAATTTTGGAGGCTGTTTAGTTGTGAACTTGTGAACTATAATGGATTATCTGCCCTTTTGTTTTCGACGGATCAAATGTTAACCGTTTGAATCCGAATCGCTATAATTTGGCTGATGATCAAAGAGGGAAGCTATAAACCTATATAACTTTCATGTCATAGCTGATTTGGGATATGTTAAAATAAACTGAAAAGTTTTGAATCAATATCTTGAATACTATCGAGATACAAGACTGTTATTGTGGTTCTAAAGAACGGTGGTTGCATCGATATTGAGTGTTATGGATCTTGCTATATGCTCTCGTATCTCATTAATGCTTCTAGAAAGGTTTGAAATTGCAAAGATGGATTTTTCTTGGATGACACTAAAGTTTTAAAATTATCTATCATTCATTAGATAATCCTTTTTATAAAAACAAAATAGCTTTCTTTGCTAGAATTCTTTTAGAAAACGAACATCCATGAGGACTTCAAATCTTCGGTTAGATTGAATTGGCTGTTTTGTTCAATTGTTAATTTGTCTTAGGGAGGGATTGAAGATGGTGAAGACCCAAAGTTGGCAGCTGTTAGGGAACTGAGAAAGGAAACTGGAATAGTGTCTGCTGAGATCGTTGCCGAGGTACTACTTTGTTAGATGATTTGTTTCAATCCCTTTCATGAAGAAATATTAAACTGACCATGTCTACAACATTTTCAAAGTCACCTTAACAATGGTACTGAAATAAATTCAAGGATTTGCATTGTTTTCGGTTAACAGGTACCCAAATGGTTGACTTACGACTTTCCTCCTTCTGTGAAGACCAAAGTCAATCGTCTCTGGGGCGGGCAATGGCACGGGCAGGCACAAAAATGGTCTGTCTTTCTGTCTTTTTTCATTATAGTTGAAACTGAAATTAGACAGGATTGATGCAAAGAAATGAAGCCTAATGTGTATGTGTTGTGTCCTTGTGGCCGCATTTTGGAACTTATGACAGGTTTCTTATGAGATTGACAAAAGACGATAGTGAGATTAACTTGGACAATGATGAAGCAGACGTTGAATTTGCAGAGTGGAAATGGGCAAACCCCGAAGAAGTTGTTGAACAGGTCTTTTCAGACACTCGTTTGATAATGATTTCAAAAAAGTTTAAAGATCAAAATTGAGATTTTACAATACACAAACCTAAAGTGTAGAGAGTGACAATTTAAACTTACATACAAATATAGTAACATGTAATTGAAGTTTTTTTCCCCCCTTTTTCAGGCTGTGGACTACAAGAGACCAACTTATGAGGAGGTAATGAAGACTTTTGCACCTTACCTTGATGGAAACAAAATTTCTACCAAATGCAAATCATCCAAATGGTGA

mRNA sequence

ATGGACTCTCTTCCTTCTGGTTACCGCCCCAACGTTGGCGTTTGTCTCATCAACTCTGATAATCAGGTTTTTGTTGCTTCTAGACTGAATGTTCCAGGAGCATGGCAGATGCCTCAGGGAGGGATTGAAGATGGTGAAGACCCAAAGTTGGCAGCTGTTAGGGAACTGAGAAAGGAAACTGGAATAGTGTCTGCTGAGATCGTTGCCGAGGTACCCAAATGGTTGACTTACGACTTTCCTCCTTCTGTGAAGACCAAAGTCAATCGTCTCTGGGGCGGGCAATGGCACGGGCAGGCACAAAAATGGTTTCTTATGAGATTGACAAAAGACGATAGTGAGATTAACTTGGACAATGATGAAGCAGACGTTGAATTTGCAGAGTGGAAATGGGCAAACCCCGAAGAAGTTGTTGAACAGGCTGTGGACTACAAGAGACCAACTTATGAGGAGGTAATGAAGACTTTTGCACCTTACCTTGATGGAAACAAAATTTCTACCAAATGCAAATCATCCAAATGGTGA

Coding sequence (CDS)

ATGGACTCTCTTCCTTCTGGTTACCGCCCCAACGTTGGCGTTTGTCTCATCAACTCTGATAATCAGGTTTTTGTTGCTTCTAGACTGAATGTTCCAGGAGCATGGCAGATGCCTCAGGGAGGGATTGAAGATGGTGAAGACCCAAAGTTGGCAGCTGTTAGGGAACTGAGAAAGGAAACTGGAATAGTGTCTGCTGAGATCGTTGCCGAGGTACCCAAATGGTTGACTTACGACTTTCCTCCTTCTGTGAAGACCAAAGTCAATCGTCTCTGGGGCGGGCAATGGCACGGGCAGGCACAAAAATGGTTTCTTATGAGATTGACAAAAGACGATAGTGAGATTAACTTGGACAATGATGAAGCAGACGTTGAATTTGCAGAGTGGAAATGGGCAAACCCCGAAGAAGTTGTTGAACAGGCTGTGGACTACAAGAGACCAACTTATGAGGAGGTAATGAAGACTTTTGCACCTTACCTTGATGGAAACAAAATTTCTACCAAATGCAAATCATCCAAATGGTGA

Protein sequence

MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKETGIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW

Homology

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BLAST of Cla004504 vs. Swiss-Prot
Match: NUD25_ARATH (Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.0e-79
Identity = 137/175 (78.29%), Postives = 154/175 (88.00%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           M++LP GYRPNVGVCLINSDN VFVASRLNVPGAWQMPQGGIEDGEDPK AA+REL++ET
Sbjct: 1   MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRL--TKDDSEINLDN 120
           G+VSAEIV+EVP WLTYDFPP+VK KVNRLWGG+WHGQAQKW+L+RL   +D+ EINL N
Sbjct: 61  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 120

Query: 121 DEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 174
           +EAD EFAEWKWA PEEVVEQAVDYKRPTYEEV+KTF  +L+    + KCKS+KW
Sbjct: 121 NEADSEFAEWKWAKPEEVVEQAVDYKRPTYEEVIKTFGSFLNDTGRAAKCKSAKW 175

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BLAST of Cla004504 vs. Swiss-Prot
Match: NUD26_ARATH (Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-54
Identity = 94/160 (58.75%), Postives = 121/160 (75.62%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           M+S P GYR NVGVCL+NS  ++F ASRL++P AWQMPQGGI++GEDP++A +REL++ET
Sbjct: 56  MESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEET 115

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120
           G+ SAEI+AE P W+TYDFPP V+ K+   WG  W GQAQKWFL++ T  D EINL  D 
Sbjct: 116 GVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDG 175

Query: 121 AD-VEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL 160
            +  EF EW W +P++VVE AV++K+P Y+EVM  FA +L
Sbjct: 176 TEKPEFGEWSWTSPDQVVENAVEFKKPVYKEVMSAFASHL 215

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BLAST of Cla004504 vs. Swiss-Prot
Match: NUD27_ARATH (Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-47
Identity = 87/159 (54.72%), Postives = 111/159 (69.81%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           ++S P GYR NVG+CL++   ++F AS++++P  WQMPQGG ++GED + AA RELR+ET
Sbjct: 55  VESPPVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREET 114

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDND- 120
           G+ SAE +AE+P WLTYDFP  VK K+NR W   + GQAQKWFL + T  + EINL  D 
Sbjct: 115 GVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINLLGDG 174

Query: 121 EADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPY 159
            A  EF  W W  PE+V+E AV +KRP YE V+K F PY
Sbjct: 175 TAKPEFKVWSWMLPEQVIEHAVYFKRPVYEHVIKQFNPY 213

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BLAST of Cla004504 vs. Swiss-Prot
Match: RPPH_RHOSK (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rppH PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.4e-37
Identity = 78/162 (48.15%), Postives = 103/162 (63.58%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVP-GAWQMPQGGIEDGEDPKLAAVRELRKE 60
           +D L   YRP VG+ LIN +  +F   R++ P  AWQMPQGGI++GE P+ AA+REL +E
Sbjct: 5   IDPLTLPYRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEE 64

Query: 61  TGIVS--AEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLD 120
           TGI +   E VA+ P W+TYD PP +   + R+WGG++ GQ QKWFL R    D E+ + 
Sbjct: 65  TGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEVGIG 124

Query: 121 NDEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL 160
            D A  EF+ W+W   EE+V   V +KR  YEEV+ TF P+L
Sbjct: 125 TDHA--EFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161

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BLAST of Cla004504 vs. Swiss-Prot
Match: RPPH_RHOS4 (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rppH PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.4e-37
Identity = 78/162 (48.15%), Postives = 103/162 (63.58%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVP-GAWQMPQGGIEDGEDPKLAAVRELRKE 60
           +D L   YRP VG+ LIN +  +F   R++ P  AWQMPQGGI++GE P+ AA+REL +E
Sbjct: 5   IDPLTLPYRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEE 64

Query: 61  TGIVS--AEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLD 120
           TGI +   E VA+ P W+TYD PP +   + R+WGG++ GQ QKWFL R    D E+ + 
Sbjct: 65  TGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEVGIG 124

Query: 121 NDEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL 160
            D A  EF+ W+W   EE+V   V +KR  YEEV+ TF P+L
Sbjct: 125 TDHA--EFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161

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BLAST of Cla004504 vs. TrEMBL
Match: A0A0A0KL56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G002050 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.2e-96
Identity = 169/173 (97.69%), Postives = 172/173 (99.42%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           MDSLPSGYRPNVGVCLINSD QVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET
Sbjct: 1   MDSLPSGYRPNVGVCLINSDYQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120
           GIVSAE+VAEVPKWLTYDFPP+VKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE
Sbjct: 61  GIVSAEMVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120

Query: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 174
           ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL+GNKISTKCKSSKW
Sbjct: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLNGNKISTKCKSSKW 173

[Close]

BLAST of Cla004504 vs. TrEMBL
Match: V4W5X6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016942mg PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 5.2e-86
Identity = 149/173 (86.13%), Postives = 163/173 (94.22%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           MD LPSGYRPNVGVCLINSD+Q+FVASRLNVPGAWQMPQGGIEDGEDPKLAA+RELR+ET
Sbjct: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120
           GIVSAEI+AEVP WLTYDFPP+VKTKVNRLWGG+WHGQAQKWFLM+LT D+SEINL N E
Sbjct: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120

Query: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 174
           AD EFAEWKWA+PEEVVEQAVDYKRPTYEEVM+TF PYL+ N I+ KCKS+KW
Sbjct: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173

[Close]

BLAST of Cla004504 vs. TrEMBL
Match: A0A067FB89_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030711mg PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 5.2e-86
Identity = 149/173 (86.13%), Postives = 163/173 (94.22%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           MD LPSGYRPNVGVCLINSD+Q+FVASRLNVPGAWQMPQGGIEDGEDPKLAA+RELR+ET
Sbjct: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120
           GIVSAEI+AEVP WLTYDFPP+VKTKVNRLWGG+WHGQAQKWFLM+LT D+SEINL N E
Sbjct: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120

Query: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 174
           AD EFAEWKWA+PEEVVEQAVDYKRPTYEEVM+TF PYL+ N I+ KCKS+KW
Sbjct: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173

[Close]

BLAST of Cla004504 vs. TrEMBL
Match: A0A061E9C3_THECC (Nudix hydrolase OS=Theobroma cacao GN=TCM_010878 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.9e-84
Identity = 146/173 (84.39%), Postives = 157/173 (90.75%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           M+ LPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGE+PK AA+RELR+ET
Sbjct: 1   MEGLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELREET 60

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120
           G+VSAE +AEVP WLTYDFPP+VK KVNRLWGG+WHGQAQKWFLMRLTKD+SEINL N E
Sbjct: 61  GVVSAEFIAEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMRLTKDESEINLANGE 120

Query: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 174
           AD EFAEWKWA PEEVVEQAVDYKRPTYEEVMKTF PY   N  + KCKS+KW
Sbjct: 121 ADPEFAEWKWATPEEVVEQAVDYKRPTYEEVMKTFRPYFSDNSKAAKCKSTKW 173

[Close]

BLAST of Cla004504 vs. TrEMBL
Match: B9HJB6_POPTR (Diadenosine 5' family protein OS=Populus trichocarpa GN=POPTR_0008s12900g PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 8.3e-84
Identity = 146/173 (84.39%), Postives = 159/173 (91.91%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           MD LPSGYRPNVGVCLINSDN VFVASRLNVPGAWQMPQGGIEDGE+PK AA+REL +ET
Sbjct: 1   MDGLPSGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELLEET 60

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120
           GIVSAEI+AEVP WLTYDFPP+VK KVNRLWGG+WHGQAQKWFLMRLTKD+SEINL + E
Sbjct: 61  GIVSAEIIAEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMRLTKDESEINLGSGE 120

Query: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 174
           AD EFAEWKW +PEEV+EQAVDYKRPTYEEVM+TF PYL+ N I+ KCKSSKW
Sbjct: 121 ADPEFAEWKWTSPEEVIEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSSKW 173

[Close]

BLAST of Cla004504 vs. NCBI nr
Match: gi|449467617|ref|XP_004151519.1| (PREDICTED: nudix hydrolase 25 isoform X1 [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 6.1e-96
Identity = 169/173 (97.69%), Postives = 172/173 (99.42%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           MDSLPSGYRPNVGVCLINSD QVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET
Sbjct: 1   MDSLPSGYRPNVGVCLINSDYQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120
           GIVSAE+VAEVPKWLTYDFPP+VKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE
Sbjct: 61  GIVSAEMVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120

Query: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 174
           ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL+GNKISTKCKSSKW
Sbjct: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLNGNKISTKCKSSKW 173

[Close]

BLAST of Cla004504 vs. NCBI nr
Match: gi|659109478|ref|XP_008454739.1| (PREDICTED: nudix hydrolase 25 isoform X1 [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 1.8e-95
Identity = 167/173 (96.53%), Postives = 172/173 (99.42%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           MDSLPSGYRPNVGVCLINSD QVFVAS+LNVPGAWQMPQGGIEDGEDPKLAA+RELRKET
Sbjct: 1   MDSLPSGYRPNVGVCLINSDYQVFVASKLNVPGAWQMPQGGIEDGEDPKLAAIRELRKET 60

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120
           GIVSAE+VAEVPKWLTYDFPP+VKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE
Sbjct: 61  GIVSAEMVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120

Query: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 174
           ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYL+GNKISTKCKSSKW
Sbjct: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLNGNKISTKCKSSKW 173

[Close]

BLAST of Cla004504 vs. NCBI nr
Match: gi|567911891|ref|XP_006448259.1| (hypothetical protein CICLE_v10016942mg [Citrus clementina])

HSP 1 Score: 325.1 bits (832), Expect = 7.5e-86
Identity = 149/173 (86.13%), Postives = 163/173 (94.22%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           MD LPSGYRPNVGVCLINSD+Q+FVASRLNVPGAWQMPQGGIEDGEDPKLAA+RELR+ET
Sbjct: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120
           GIVSAEI+AEVP WLTYDFPP+VKTKVNRLWGG+WHGQAQKWFLM+LT D+SEINL N E
Sbjct: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120

Query: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 174
           AD EFAEWKWA+PEEVVEQAVDYKRPTYEEVM+TF PYL+ N I+ KCKS+KW
Sbjct: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173

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BLAST of Cla004504 vs. NCBI nr
Match: gi|470122686|ref|XP_004297370.1| (PREDICTED: nudix hydrolase 25 [Fragaria vesca subsp. vesca])

HSP 1 Score: 324.3 bits (830), Expect = 1.3e-85
Identity = 146/173 (84.39%), Postives = 159/173 (91.91%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           M+ LP GYRPNVGVCLINSDN VFV SRLNVPGAWQMPQGGIEDGE+PK AA+RELR+ET
Sbjct: 1   MEDLPPGYRPNVGVCLINSDNLVFVGSRLNVPGAWQMPQGGIEDGEEPKSAAIRELREET 60

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120
           G+VSAEI+AEVP WLTYDFPP+VKTKVNRLWGG+WHGQAQKWFLMR TKD+SEINLD  E
Sbjct: 61  GVVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMRFTKDESEINLDTGE 120

Query: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 174
           AD EFAEWKWA+PEEV+EQA DYKRPTYEEVMKTF PYLDGN +S KCKS+KW
Sbjct: 121 ADAEFAEWKWASPEEVIEQAADYKRPTYEEVMKTFKPYLDGNTLSAKCKSTKW 173

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BLAST of Cla004504 vs. NCBI nr
Match: gi|1009154996|ref|XP_015895477.1| (PREDICTED: nudix hydrolase 25 [Ziziphus jujuba])

HSP 1 Score: 323.9 bits (829), Expect = 1.7e-85
Identity = 148/173 (85.55%), Postives = 161/173 (93.06%), Query Frame = 1


Query: 1   MDSLPSGYRPNVGVCLINSDNQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60
           M+ LPSGYRPNVGVCLINSD+Q+FVASRLNVPGAWQMPQGGIEDGEDPK AAVRELR+ET
Sbjct: 1   MEGLPSGYRPNVGVCLINSDDQIFVASRLNVPGAWQMPQGGIEDGEDPKSAAVRELREET 60

Query: 61  GIVSAEIVAEVPKWLTYDFPPSVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120
           GIVSA I+AEVP WLTYDFPP+VK KVNRLWGG+WHGQAQKWFLMRLTKDDSE+NL N E
Sbjct: 61  GIVSAAIIAEVPNWLTYDFPPTVKAKVNRLWGGEWHGQAQKWFLMRLTKDDSEVNLANGE 120

Query: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 174
           A+ EFAEWKWA+PEEV+EQAVDYKRPTYEEVM+TF PY + N ISTKCKSSKW
Sbjct: 121 AEPEFAEWKWASPEEVIEQAVDYKRPTYEEVMRTFQPYFNQNSISTKCKSSKW 173

The following BLAST results are available for this feature:

BLAST of Cla004504 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NUD25_ARATH	3.0e-79	78.29	Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1	[more]
NUD26_ARATH	1.2e-54	58.75	Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1	[more]
NUD27_ARATH	1.1e-47	54.72	Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27 PE=1 SV=1	[more]
RPPH_RHOSK	6.4e-37	48.15	RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) ...	[more]
RPPH_RHOS4	6.4e-37	48.15	RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /...	[more]

BLAST of Cla004504 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL56_CUCSA	4.2e-96	97.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G002050 PE=3 SV=1	[more]
V4W5X6_9ROSI	5.2e-86	86.13	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016942mg PE=3 SV=1	[more]
A0A067FB89_CITSI	5.2e-86	86.13	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030711mg PE=3 SV=1	[more]
A0A061E9C3_THECC	2.9e-84	84.39	Nudix hydrolase OS=Theobroma cacao GN=TCM_010878 PE=3 SV=1	[more]
B9HJB6_POPTR	8.3e-84	84.39	Diadenosine 5' family protein OS=Populus trichocarpa GN=POPTR_0008s12900g PE=3 S...	[more]

BLAST of Cla004504 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449467617\|ref\|XP_004151519.1\|	6.1e-96	97.69	PREDICTED: nudix hydrolase 25 isoform X1 [Cucumis sativus]	[more]
gi\|659109478\|ref\|XP_008454739.1\|	1.8e-95	96.53	PREDICTED: nudix hydrolase 25 isoform X1 [Cucumis melo]	[more]
gi\|567911891\|ref\|XP_006448259.1\|	7.5e-86	86.13	hypothetical protein CICLE_v10016942mg [Citrus clementina]	[more]
gi\|470122686\|ref\|XP_004297370.1\|	1.3e-85	84.39	PREDICTED: nudix hydrolase 25 [Fragaria vesca subsp. vesca]	[more]
gi\|1009154996\|ref\|XP_015895477.1\|	1.7e-85	85.55	PREDICTED: nudix hydrolase 25 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000086	NUDIX_hydrolase_dom
IPR015797	NUDIX_hydrolase-like_dom_sf
IPR020476	Nudix_hydrolase
IPR022927	RppH

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015967	diadenosine tetraphosphate catabolic process
biological_process	GO:1901575	organic substance catabolic process
biological_process	GO:0019693	ribose phosphate metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0006508	proteolysis
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0044712	single-organism catabolic process
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0006753	nucleoside phosphate metabolic process
biological_process	GO:0044248	cellular catabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006857	oligopeptide transport
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008893	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity
molecular_function	GO:0004081	bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004707	MAP kinase activity
molecular_function	GO:0004185	serine-type carboxypeptidase activity
molecular_function	GO:0034432	bis(5'-adenosyl)-pentaphosphatase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU14315	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU70014	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004504	Cla004504.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU70014	WMU70014	transcribed_cluster
WMU14315	WMU14315	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000086	NUDIX hydrolase domain	PFAM	PF00293	NUDIX	coord: 8..149 score: 4.6
IPR000086	NUDIX hydrolase domain	PROFILE	PS51462	NUDIX	coord: 7..153 score: 20
IPR015797	NUDIX hydrolase domain-like	GENE3D	G3DSA:3.90.79.10		coord: 8..155 score: 2.2
IPR015797	NUDIX hydrolase domain-like	unknown	SSF55811	Nudix	coord: 7..158 score: 7.85
IPR020476	NUDIX hydrolase	PRINTS	PR00502	NUDIXFAMILY	coord: 35..49 score: 1.4E-5coord: 49..64 score: 1.
IPR022927	RNA pyrophosphohydrolase RppH	HAMAP	MF_00298	Nudix_RppH	coord: 2..160 score: 31
None	No IPR available	PANTHER	PTHR11839	UDP/ADP-SUGAR PYROPHOSPHATASE	coord: 1..173 score: 2.9E
None	No IPR available	PANTHER	PTHR11839:SF8	NUDIX HYDROLASE 25	coord: 1..173 score: 2.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004504	Cla97C07G134440	Watermelon (97103) v2	wmwmbB170
Cla004504	MELO3C018305	Melon (DHL92) v3.5.1	mewmB060
Cla004504	ClCG07G006670	Watermelon (Charleston Gray)	wcgwmB379
Cla004504	CmaCh04G009920	Cucurbita maxima (Rimu)	cmawmB695
Cla004504	CmoCh04G010710	Cucurbita moschata (Rifu)	cmowmB689
Cla004504	Lsi04G011630	Bottle gourd (USVL1VR-Ls)	lsiwmB311
Cla004504	Cp4.1LG01g07820	Cucurbita pepo (Zucchini)	cpewmB423
Cla004504	CsGy5G010430	Cucumber (Gy14) v2	cgybwmB370
Cla004504	MELO3C018305.2	Melon (DHL92) v3.6.1	medwmB060
Cla004504	Carg00106	Silver-seed gourd	carwmB0668
Cla004504	CsaV3_5G013910	Cucumber (Chinese Long) v3	cucwmB421
Cla004504	Bhi07G000241	Wax gourd	wgowmB547

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004504	Cucurbita maxima (Rimu)	cmawmB697
Cla004504	Cucurbita moschata (Rifu)	cmowmB691
Cla004504	Cucurbita pepo (Zucchini)	cpewmB425
Cla004504	Bottle gourd (USVL1VR-Ls)	lsiwmB303
Cla004504	Silver-seed gourd	carwmB0168