Cla004482 (gene) Watermelon (97103) v1

Overview
NameCla004482
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPGPS/D10 (AHRD V1 *--- Q9ZTM9_PETHY)
LocationChr10 : 4286776 .. 4287060 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGAAGGGCAGAGGGAAAACTGGGGAAAACAGAGAGTTCAAAGATGGGAGCATTGCCGGAATACGACATGGAAGAGTTGAAGAAAACCCCACATTTGTTGTTGTCACCAACAGCCTTATCTCGCATCACAAAATCCAACTGTTTGTGCTCTCCGACCACCCATATTGGATCTTTCAGGTGTCGGCGTCACCGGACCTCCACCATGACTCGTGGCGGCTCCGTCGGCTCCAATCTCTCTGATTTGGCTCGCAAGTCTGAGGCTGCCGGTGACTCGGTTTGA

mRNA sequence

ATGGAGGGAAGGGCAGAGGGAAAACTGGGGAAAACAGAGAGTTCAAAGATGGGAGCATTGCCGGAATACGACATGGAAGAGTTGAAGAAAACCCCACATTTGTTGTTGTCACCAACAGCCTTATCTCGCATCACAAAATCCAACTGTTTGTGCTCTCCGACCACCCATATTGGATCTTTCAGGTGTCGGCGTCACCGGACCTCCACCATGACTCGTGGCGGCTCCGTCGGCTCCAATCTCTCTGATTTGGCTCGCAAGTCTGAGGCTGCCGGTGACTCGGTTTGA

Coding sequence (CDS)

ATGGAGGGAAGGGCAGAGGGAAAACTGGGGAAAACAGAGAGTTCAAAGATGGGAGCATTGCCGGAATACGACATGGAAGAGTTGAAGAAAACCCCACATTTGTTGTTGTCACCAACAGCCTTATCTCGCATCACAAAATCCAACTGTTTGTGCTCTCCGACCACCCATATTGGATCTTTCAGGTGTCGGCGTCACCGGACCTCCACCATGACTCGTGGCGGCTCCGTCGGCTCCAATCTCTCTGATTTGGCTCGCAAGTCTGAGGCTGCCGGTGACTCGGTTTGA

Protein sequence

MEGRAEGKLGKTESSKMGALPEYDMEELKKTPHLLLSPTALSRITKSNCLCSPTTHIGSFRCRRHRTSTMTRGGSVGSNLSDLARKSEAAGDSV
Homology
[Close]
BLAST of Cla004482 vs. TrEMBL
Match: A0A0A0L7C7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045050 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-22
Identity = 57/87 (65.52%), Postives = 71/87 (81.61%), Query Frame = 1 

Query: 11  KTESSKMGALPEYDMEELKKTPHLLLSPTALSRIT-----KSNCLCSPTTHIGSFRCRRH 70
           KT +SK  A+ E + ++LKK  +LL+SPTALSR+T     KSNCLCSPTTHIGSFRCRRH
Sbjct: 16  KTPTSK-SAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLCSPTTHIGSFRCRRH 75

Query: 71  RTSTMTRGGSVGSNLSDLARKSEAAGD 93
           R+++++RGGSVGSNLSDL +KSEA  D
Sbjct: 76  RSTSISRGGSVGSNLSDLVQKSEAMED 101

[Close]
BLAST of Cla004482 vs. TrEMBL
Match: W9SBP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020205 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.1e-19
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 1   MEGRAEGKLGKTESSKMGALPEYDMEELKKTPHLLLSPTALSRITKS-----NCLCSPTT 60
           +E R+  K+ +   +    +P+ ++ ELKK  HLL SP A   +TKS     NCLCSPTT
Sbjct: 5   VEQRSPQKIKENNMNFKLKIPDINLNELKKQTHLLASPRAQRAVTKSSSTRWNCLCSPTT 64

Query: 61  HIGSFRCRRHRTSTMTRGGSVGSNLSDLARKSEAAGDSV 95
           H GSFRCR HR+S M RGGSVGSNLS+LARK  A  DS+
Sbjct: 65  HAGSFRCRHHRSSCMLRGGSVGSNLSELARKPGAISDSL 103

[Close]
BLAST of Cla004482 vs. TrEMBL
Match: V7B5G4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G085500g PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 1 

Query: 1  MEGRAEGKLGKTESSKMGALPEYDMEELKKTPHLLLSPTALSRITKS------NCLCSPT 60
          ME + + K  K   SK   LPE D+E LKK  H+L+SPT    + +       NCLCSPT
Sbjct: 1  MEPKVDQKPPKIMVSK---LPELDVEILKKNSHMLVSPTTSETLNRKRSPGRMNCLCSPT 60

Query: 61 THIGSFRCRRHRTSTMTRGGSVGSNLSDLARKSEAAGDSV 95
          TH+GSFRCR HR+S M RG S+GSNL++L  K+    DS+
Sbjct: 61 THVGSFRCRHHRSSDMRRGKSIGSNLAELGSKAGPISDSL 97

[Close]
BLAST of Cla004482 vs. TrEMBL
Match: A0A151S4K4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028449 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1 

Query: 1  MEGRAEGKLGKTESSKMGALPEYDMEELKKTPHLLLSPTALSRITKS-----NCLCSPTT 60
          ME + E K  K    K+   PE D+E LKK  H+L+SPT+ S   K+     NCLCSPTT
Sbjct: 1  MEPKVEQKPPKI---KLSNSPEIDVETLKKNSHMLVSPTSQSITRKNSNGRLNCLCSPTT 60

Query: 61 HIGSFRCRRHRTSTMTRGGSVGSNLSDLARKSEAAGDSV 95
          H+GSFRCR HR++ M RG S+GSNL+ L  ++ +  DS+
Sbjct: 61 HVGSFRCRHHRSAVMRRGRSIGSNLAALGSEAGSISDSL 96

[Close]
BLAST of Cla004482 vs. TrEMBL
Match: A0A0A0K3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278200 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 1 

Query: 19  ALPEYDMEELKKTPHLLLSPTALSRIT-------KSNCLCSPTTHIGSFRCRRHRTSTMT 78
           A  + ++E+LK+ P +L+SP+  S I        K+NCLCSPTTHIGSFRCR HR S M 
Sbjct: 33  AFTDLNLEDLKQNPRILVSPSPPSSIAARTPSSAKANCLCSPTTHIGSFRCRHHRHSGMI 92

Query: 79  RGGSVGSNLSDLARK 87
           RGGSVGSNLSDL RK
Sbjct: 93  RGGSVGSNLSDLTRK 107

[Close]
BLAST of Cla004482 vs. NCBI nr
Match: gi|700200858|gb|KGN55991.1| (hypothetical protein Csa_3G045050 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-21
Identity = 57/87 (65.52%), Postives = 71/87 (81.61%), Query Frame = 1 

Query: 11  KTESSKMGALPEYDMEELKKTPHLLLSPTALSRIT-----KSNCLCSPTTHIGSFRCRRH 70
           KT +SK  A+ E + ++LKK  +LL+SPTALSR+T     KSNCLCSPTTHIGSFRCRRH
Sbjct: 16  KTPTSK-SAMVETEFDDLKKNANLLMSPTALSRMTKSRSIKSNCLCSPTTHIGSFRCRRH 75

Query: 71  RTSTMTRGGSVGSNLSDLARKSEAAGD 93
           R+++++RGGSVGSNLSDL +KSEA  D
Sbjct: 76  RSTSISRGGSVGSNLSDLVQKSEAMED 101

[Close]
BLAST of Cla004482 vs. NCBI nr
Match: gi|703127862|ref|XP_010103953.1| (hypothetical protein L484_020205 [Morus notabilis])

HSP 1 Score: 101.7 bits (252), Expect = 7.3e-19
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 1   MEGRAEGKLGKTESSKMGALPEYDMEELKKTPHLLLSPTALSRITKS-----NCLCSPTT 60
           +E R+  K+ +   +    +P+ ++ ELKK  HLL SP A   +TKS     NCLCSPTT
Sbjct: 5   VEQRSPQKIKENNMNFKLKIPDINLNELKKQTHLLASPRAQRAVTKSSSTRWNCLCSPTT 64

Query: 61  HIGSFRCRRHRTSTMTRGGSVGSNLSDLARKSEAAGDSV 95
           H GSFRCR HR+S M RGGSVGSNLS+LARK  A  DS+
Sbjct: 65  HAGSFRCRHHRSSCMLRGGSVGSNLSELARKPGAISDSL 103

[Close]
BLAST of Cla004482 vs. NCBI nr
Match: gi|702387289|ref|XP_010064975.1| (PREDICTED: uncharacterized protein LOC104452162 [Eucalyptus grandis])

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-16
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1 

Query: 20 LPEYDMEELKKTPHLLLSPTALSRIT--KSNCLCSPTTHIGSFRCRRHRTSTMTRGGSVG 79
          +P+ D+EE+ K     LSP A   ++  KSNCLCSPTTH+GSFRCR HR+S+++RG SVG
Sbjct: 22 VPKIDLEEIGKNSPFTLSPRASKAMSRSKSNCLCSPTTHVGSFRCRIHRSSSISRGSSVG 81

Query: 80 SNLSDLARKSEAAGDSV 95
          SNLS+L  KS   GDSV
Sbjct: 82 SNLSELGSKSSGVGDSV 98

[Close]
BLAST of Cla004482 vs. NCBI nr
Match: gi|593353361|ref|XP_007140119.1| (hypothetical protein PHAVU_008G085500g [Phaseolus vulgaris])

HSP 1 Score: 92.4 bits (228), Expect = 4.4e-16
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 1 

Query: 1  MEGRAEGKLGKTESSKMGALPEYDMEELKKTPHLLLSPTALSRITKS------NCLCSPT 60
          ME + + K  K   SK   LPE D+E LKK  H+L+SPT    + +       NCLCSPT
Sbjct: 1  MEPKVDQKPPKIMVSK---LPELDVEILKKNSHMLVSPTTSETLNRKRSPGRMNCLCSPT 60

Query: 61 THIGSFRCRRHRTSTMTRGGSVGSNLSDLARKSEAAGDSV 95
          TH+GSFRCR HR+S M RG S+GSNL++L  K+    DS+
Sbjct: 61 THVGSFRCRHHRSSDMRRGKSIGSNLAELGSKAGPISDSL 97

[Close]
BLAST of Cla004482 vs. NCBI nr
Match: gi|1012338514|gb|KYP49765.1| (hypothetical protein KK1_028449 [Cajanus cajan])

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1 

Query: 1  MEGRAEGKLGKTESSKMGALPEYDMEELKKTPHLLLSPTALSRITKS-----NCLCSPTT 60
          ME + E K  K    K+   PE D+E LKK  H+L+SPT+ S   K+     NCLCSPTT
Sbjct: 1  MEPKVEQKPPKI---KLSNSPEIDVETLKKNSHMLVSPTSQSITRKNSNGRLNCLCSPTT 60

Query: 61 HIGSFRCRRHRTSTMTRGGSVGSNLSDLARKSEAAGDSV 95
          H+GSFRCR HR++ M RG S+GSNL+ L  ++ +  DS+
Sbjct: 61 HVGSFRCRHHRSAVMRRGRSIGSNLAALGSEAGSISDSL 96

The following BLAST results are available for this feature:
BLAST of Cla004482 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7C7_CUCSA8.4e-2265.52Uncharacterized protein OS=Cucumis sativus GN=Csa_3G045050 PE=4 SV=1[more]
W9SBP1_9ROSA5.1e-1953.54Uncharacterized protein OS=Morus notabilis GN=L484_020205 PE=4 SV=1[more]
V7B5G4_PHAVU3.1e-1649.00Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G085500g PE=4 SV=1[more]
A0A151S4K4_CAJCA1.2e-1548.48Uncharacterized protein OS=Cajanus cajan GN=KK1_028449 PE=4 SV=1[more]
A0A0A0K3W3_CUCSA1.2e-1560.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278200 PE=4 SV=1[more]
BLAST of Cla004482 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200858|gb|KGN55991.1|1.2e-2165.52hypothetical protein Csa_3G045050 [Cucumis sativus][more]
gi|703127862|ref|XP_010103953.1|7.3e-1953.54hypothetical protein L484_020205 [Morus notabilis][more]
gi|702387289|ref|XP_010064975.1|2.6e-1658.44PREDICTED: uncharacterized protein LOC104452162 [Eucalyptus grandis][more]
gi|593353361|ref|XP_007140119.1|4.4e-1649.00hypothetical protein PHAVU_008G085500g [Phaseolus vulgaris][more]
gi|1012338514|gb|KYP49765.1|1.7e-1548.48hypothetical protein KK1_028449 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004482Cla004482.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 42..94
score: 2.5