Cla004474 (gene) Watermelon (97103) v1

Overview
NameCla004474
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetrotransposon protein (AHRD V1 ***- E5GCB5_CUCME)
LocationChr10 : 4354836 .. 4355351 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGGCCAGTTGGGATTCGGCTGGAACGAAGAGTTTAAATGTGTCCAGGTCAAGAGGGAGATTTTCGATCTTTGGGTTCGAGTAAGATTTTAAAAAACAAAATCTACCTTTACGTGTTAATTATGTAAATATTAATAATGTGTACGTGTGTAAATGTAGAGTCATCACAGTGCAAAGAGGATGTGGAACAAGTCATTCCCCCATTACGATGACCTCTCCACCGTCTTTGAGAAAGATAGAGTTGTAGGACAATCAAGTGAGGACCCACACGTGATGGCGAGCAATGCATTTAAAGAGTTTGAAGATGAGATTCGACTTGGAACACAGGACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCATTAAATCCGGATGGAATGGATGAAGAGACAGTGGAGCAATCTACAAGTAGAGCGACACCTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAACCTGAAATGATCGATATCATGAGATCGACTGTTGAGATGTAG

mRNA sequence

ATGTTAGGCCAGTTGGGATTCGGCTGGAACGAAGAGTTTAAATGTGTCCAGGTCAAGAGGGAGATTTTCGATCTTTGGGTTCGAAGTCATCACAGTGCAAAGAGGATGTGGAACAAGTCATTCCCCCATTACGATGACCTCTCCACCGTCTTTGAGAAAGATAGAGTTGTAGGACAATCAAGTGAGGACCCACACGTGATGGCGAGCAATGCATTTAAAGAGTTTGAAGATGAGATTCGACTTGGAACACAGGACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCATTAAATCCGGATGGAATGGATGAAGAGACAGTGGAGCAATCTACAAGTAGAGCGACACCTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAACCTGAAATGATCGATATCATGAGATCGACTGTTGAGATGTAG

Coding sequence (CDS)

ATGTTAGGCCAGTTGGGATTCGGCTGGAACGAAGAGTTTAAATGTGTCCAGGTCAAGAGGGAGATTTTCGATCTTTGGGTTCGAAGTCATCACAGTGCAAAGAGGATGTGGAACAAGTCATTCCCCCATTACGATGACCTCTCCACCGTCTTTGAGAAAGATAGAGTTGTAGGACAATCAAGTGAGGACCCACACGTGATGGCGAGCAATGCATTTAAAGAGTTTGAAGATGAGATTCGACTTGGAACACAGGACTGTCAGACACCTGAGGTTCGCCAAACAGATTCACCATTAAATCCGGATGGAATGGATGAAGAGACAGTGGAGCAATCTACAAGTAGAGCGACACCTGCCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAACCTGAAATGATCGATATCATGAGATCGACTGTTGAGATGTAG

Protein sequence

MLGQLGFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHVMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNPDGMDEETVEQSTSRATPAESSRGSKRKRPSFQPEMIDIMRSTVEM
Homology
[Close]
BLAST of Cla004474 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-15
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = 1 

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWN+E KC+  ++E+FD W  SH +AK + NKSF HYD+LS VF KDR  G  +E   
Sbjct: 445 GFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFA 504

Query: 66  VMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNPDGMDEETVEQSTSRATPAES-SRGS 125
            + SN    ++        D   P +      ++PD    + +E  T+R +   + S GS
Sbjct: 505 DIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPD----DLMETRTARVSERRNVSSGS 564

Query: 126 KRKRPSFQPEMIDIMRSTVE 145
           KRKRP    +  DI+R+ +E
Sbjct: 565 KRKRPGHATDSGDIVRTAIE 578

[Close]
BLAST of Cla004474 vs. TrEMBL
Match: A0A0A0M0S6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13
Identity = 50/141 (35.46%), Postives = 75/141 (53.19%), Query Frame = 1 

Query: 7   FGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPHV 66
           FGWNEE KC++V++ +FD WV+ HH+A+ + NKSF ++ DL  V  +DR +G   + P  
Sbjct: 67  FGWNEERKCIKVEKSMFDDWVKEHHNARGLLNKSFSYFYDLQIVIGRDRTIGDRCKTPVE 126

Query: 67  MASNAFKEFE-DEIRLGTQDCQTPEVRQTDSPLNPDGMDEETVEQSTSRAT----PAESS 126
           M     K+ E D+I +  +D   P+         P G++  +V+  +S  T     A S 
Sbjct: 127 MDPQTTKDIEKDDIGINLEDFDIPK---------PHGLELPSVKNMSSTPTSMILDARSY 186

Query: 127 RGSKRKRPSFQPEMIDIMRST 143
           R S RKR S+       MR T
Sbjct: 187 RQS-RKRRSYSCTFCASMRET 197

[Close]
BLAST of Cla004474 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.1e-12
Identity = 47/126 (37.30%), Postives = 69/126 (54.76%), Query Frame = 1 

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWN+E KC+  ++E+FD WVRS  +AK + N  FP+YD+L+ VF +DR  G+ +E   
Sbjct: 408 GFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFA 467

Query: 66  VMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNPDGMDEETVEQSTSRATPAES-SRGS 125
            + SN      D   +G  +   P V         D + ++      SRA+  ++ S GS
Sbjct: 468 DVGSNEPGGGYDRFDMGDGNEDFPPVYSR----GVDILQDDVRASRPSRASEGKTGSSGS 527

Query: 126 KRKRPS 131
           KRKR S
Sbjct: 528 KRKRGS 529

[Close]
BLAST of Cla004474 vs. TrEMBL
Match: M5VKI8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016911mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 1 

Query: 7   FGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDP-- 66
           F WN+E K V  ++++FD WV+ H+SAKR+ NK FPHYD L  VF KDR  G+ +E P  
Sbjct: 21  FAWNDEEKMVVCEKQVFDDWVKVHNSAKRLRNKQFPHYDTLVEVFGKDRANGKGAEGPAE 80

Query: 67  --HVMASNAFKEFE----DEIRLGTQDCQTP 90
               +  N    FE    D+I   +   QTP
Sbjct: 81  VIEDLTDNNTFNFEGDGLDDINFSSPTTQTP 111

[Close]
BLAST of Cla004474 vs. TrEMBL
Match: A0A0J8FY72_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g005680 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-10
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 1 

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWN+E K V   + ++D W++SH +A  + NK FP Y++L  ++ KDR +G  S   +
Sbjct: 98  GFGWNDEEKFVTCPQAVWDEWIKSHKNAAGLRNKPFPFYEELGKIWGKDRAIGNESGTVY 157

Query: 66  VMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNPDGMDEETVEQSTSRATPAESSRGSK 125
               +  +E ED  R+G ++ Q P++   +S  +P   D      ST ++T   SSR +K
Sbjct: 158 ----DVLQEMEDVTRVG-EEHQVPDLNAEESN-SPTQCDPMGPSSSTPQSTTPSSSR-TK 213

Query: 126 RKR 129
           R R
Sbjct: 218 RVR 213

[Close]
BLAST of Cla004474 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 4.6e-20
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 1 

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWNEEF+C+  +R++FD W++SH +AK + +KSFP+YDDLS VF KDR  G  SE   
Sbjct: 91  GFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFP 150

Query: 66  VMASNAFKEFEDEIRLG-TQDCQTPEVRQTDSPLNPDGMDEETVEQSTSRATPAESSRGS 125
            + SN    F D I LG + D   P +      ++PD M      Q++ R      S  S
Sbjct: 151 NVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASER---RNCSSVS 210

Query: 126 KRKRPSFQPEMIDIMRSTVE 145
           KRKR S + E ++++RS +E
Sbjct: 211 KRKRGSERYETVEVIRSVME 227

[Close]
BLAST of Cla004474 vs. NCBI nr
Match: gi|659111565|ref|XP_008455793.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 4.7e-17
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 1 

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWNEEF+C+ V+R++FD WV+SH + K + +KSFP+YDDL+ VF KDR  G  SE   
Sbjct: 40  GFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFV 99

Query: 66  VMASNAFKEFEDEIRLG-TQDCQTPEVRQTDSPLNPDGMDEETVEQSTSRATPAESSRGS 125
            + SN    F D I LG + D   P +      ++PD M      Q++ R      S GS
Sbjct: 100 DVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASER---RNCSSGS 159

Query: 126 KRK 128
           KRK
Sbjct: 160 KRK 159

[Close]
BLAST of Cla004474 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-15
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = 1 

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWN+E KC+  ++E+FD W  SH +AK + NKSF HYD+LS VF KDR  G  +E   
Sbjct: 445 GFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFA 504

Query: 66  VMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNPDGMDEETVEQSTSRATPAES-SRGS 125
            + SN    ++        D   P +      ++PD    + +E  T+R +   + S GS
Sbjct: 505 DIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPD----DLMETRTARVSERRNVSSGS 564

Query: 126 KRKRPSFQPEMIDIMRSTVE 145
           KRKRP    +  DI+R+ +E
Sbjct: 565 KRKRPGHATDSGDIVRTAIE 578

[Close]
BLAST of Cla004474 vs. NCBI nr
Match: gi|659118456|ref|XP_008459129.1| (PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 5.8e-15
Identity = 52/142 (36.62%), Postives = 75/142 (52.82%), Query Frame = 1 

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWN+E KC+  ++E+FD WV+SH +AK +  K F HYD+LS VF KDR  G  +E   
Sbjct: 291 GFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFA 350

Query: 66  VMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNPDGMDEETVEQSTSRATPAES---SR 125
            + SN    +E  I   T D     +   +  ++PD +        T  A  +E    S 
Sbjct: 351 DVGSNNLAGYEPFIANATPDTNFQPMYSQELNMSPDEL------MGTRNARVSEGRYVSS 410

Query: 126 GSKRKRPSFQPEMIDIMRSTVE 145
           GSKRKR     +  D++R+ +E
Sbjct: 411 GSKRKRGGQAADSGDVLRTAIE 426

[Close]
BLAST of Cla004474 vs. NCBI nr
Match: gi|659112453|ref|XP_008456229.1| (PREDICTED: uncharacterized protein LOC103496234 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 3.7e-14
Identity = 51/140 (36.43%), Postives = 75/140 (53.57%), Query Frame = 1 

Query: 6   GFGWNEEFKCVQVKREIFDLWVRSHHSAKRMWNKSFPHYDDLSTVFEKDRVVGQSSEDPH 65
           GFGWN+E KC+  ++E+FD WV+SH +AK ++NKSF HYD+LS VF KDR  G  +E   
Sbjct: 90  GFGWNDEQKCIVAEKEVFDDWVKSHLAAKGLFNKSFLHYDELSYVFSKDRATGGRTESFA 149

Query: 66  VMASNAFKEFEDEIRLGTQDCQTPEVRQTDSPLNP-DGMDEETVEQSTSRATPAESSRGS 125
            + SN    +E    +   D     +      ++P + M  +T   S  R      S GS
Sbjct: 150 DVGSNDPTGYETFATVAASDTDFQPMYNQRLNMSPGELMGTKTARVSEGRYV----SSGS 209

Query: 126 KRKRPSFQPEMIDIMRSTVE 145
           K+KR     +  D++ + VE
Sbjct: 210 KQKRGGQDTDSGDVLCTAVE 225

The following BLAST results are available for this feature:
BLAST of Cla004474 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB5_CUCME2.4e-1537.86Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0M0S6_CUCSA3.8e-1335.46Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1[more]
E5GBB2_CUCME7.1e-1237.30Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
M5VKI8_PRUPE1.8e-1042.86Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016911mg PE=4 S... [more]
A0A0J8FY72_BETVU2.3e-1034.96Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g005680 PE=4 S... [more]
BLAST of Cla004474 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082641|ref|XP_008441954.1|4.6e-2042.14PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|659111565|ref|XP_008455793.1|4.7e-1743.90PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|3.4e-1537.86retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659118456|ref|XP_008459129.1|5.8e-1536.62PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo][more]
gi|659112453|ref|XP_008456229.1|3.7e-1436.43PREDICTED: uncharacterized protein LOC103496234 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004474Cla004474.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 1..67
score: 2.3E-13coord: 91..128
score: 2.3
NoneNo IPR availablePANTHERPTHR31704:SF16SUBFAMILY NOT NAMEDcoord: 91..128
score: 2.3E-13coord: 1..67
score: 2.3

Synteny