Cla004400 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004400
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Dynamin-related protein 5B-3 (AHRD V1 ***- B9WZC7_9BRYO)
Location	Chr9 : 26349103 .. 26349429 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGTAGTGGACAAGTTGCCAGCACTTCTTCGTGAGGACTTGGAGTCTGCTTTTGAAAGTGAACTGGATAATGTTTTCGACATAACAAATTTGGTACATTCCTTGAGCCAGCGAAAGCGCGATGCTGAGGTTGAACTAAGAAGGGTATGGTCTTCCTCTTTCTCTGTCTTTTTCTCTCTACTTATAGTTAGATCTATTATCTGACACAATTGTGTCCTCTCCCAGATTAAGAGACTTAAGGAGAAGTTTAGGGTGGTACATCAGCAGCTCATATTGCAACAATCCAAGCCTGAAGTGAAAACTGGAGAAGGTGATACGAAATGA

mRNA sequence

ATGCCAGTAGTGGACAAGTTGCCAGCACTTCTTCGTGAGGACTTGGAGTCTGCTTTTGAAAGTGAACTGGATAATGTTTTCGACATAACAAATTTGGTACATTCCTTGAGCCAGCGAAAGCGCGATGCTGAGGTTGAACTAAGAAGGATTAAGAGACTTAAGGAGAAGTTTAGGGTGGTACATCAGCAGCTCATATTGCAACAATCCAAGCCTGAAGTGAAAACTGGAGAAGGTGATACGAAATGA

Coding sequence (CDS)

ATGCCAGTAGTGGACAAGTTGCCAGCACTTCTTCGTGAGGACTTGGAGTCTGCTTTTGAAAGTGAACTGGATAATGTTTTCGACATAACAAATTTGGTACATTCCTTGAGCCAGCGAAAGCGCGATGCTGAGGTTGAACTAAGAAGGATTAAGAGACTTAAGGAGAAGTTTAGGGTGGTACATCAGCAGCTCATATTGCAACAATCCAAGCCTGAAGTGAAAACTGGAGAAGGTGATACGAAATGA

Protein sequence

MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVVHQQLILQQSKPEVKTGEGDTK

Homology

[Close]

BLAST of Cla004400 vs. Swiss-Prot
Match: ARC5_ARATH (Dynamin-like protein ARC5 OS=Arabidopsis thaliana GN=ARC5 PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 7.4e-20
Identity = 45/64 (70.31%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 1   MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 60
           MP+VDKLPALLRE+LE+AFE +LD++FDITNL  SL Q+KR  E+ELRRIKR+KEKFRV+
Sbjct: 698 MPIVDKLPALLREELENAFEDDLDSIFDITNLRQSLDQKKRSTEIELRRIKRIKEKFRVM 757

Query: 61  HQQL 65
           +++L
Sbjct: 758 NEKL 761

[Close]

BLAST of Cla004400 vs. TrEMBL
Match: A0A0A0K2F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G051430 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-34
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1


Query: 1   MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 60
           MPVVDKLPALLREDLESAFE+ELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV
Sbjct: 691 MPVVDKLPALLREDLESAFENELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 750

Query: 61  HQQLILQQSKPEVKTGEGDTK 82
           HQQLILQQSKPE+KT EGDTK
Sbjct: 751 HQQLILQQSKPEMKTREGDTK 771

[Close]

BLAST of Cla004400 vs. TrEMBL
Match: A0A061E9A3_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Theobroma cacao GN=TCM_007541 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 1


Query: 1   MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 60
           MPVVDKLPALLREDLESAF  ++DNVFDITNL HSL QRKRD E+EL+RIKRLKEKFRV+
Sbjct: 686 MPVVDKLPALLREDLESAFADDMDNVFDITNLRHSLGQRKRDTEIELKRIKRLKEKFRVI 745

Query: 61  HQQLILQQSKP 72
           HQQL   Q  P
Sbjct: 746 HQQLSSCQQIP 756

[Close]

BLAST of Cla004400 vs. TrEMBL
Match: A0A059ATF5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02694 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-22
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1   MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 60
           MPV+DKLPALLREDLESAFE +LDNVFDITNL HSL QRKRD E+EL+RIKRLKEKFR +
Sbjct: 689 MPVIDKLPALLREDLESAFEDDLDNVFDITNLRHSLGQRKRDVEIELKRIKRLKEKFRRI 748

Query: 61  HQQLILQQ 69
           H+QL  +Q
Sbjct: 749 HEQLSTRQ 756

[Close]

BLAST of Cla004400 vs. TrEMBL
Match: F6H1S1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00490 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.4e-22
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 1   MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 60
           MPVVDKLPALLREDLESAFE +LDNVFDITNL HSL  RKRD E+EL+RI+RLKEKFR +
Sbjct: 694 MPVVDKLPALLREDLESAFEDDLDNVFDITNLRHSLGVRKRDTEIELKRIQRLKEKFRQI 753

Query: 61  HQQLILQQ 69
           H+QL L Q
Sbjct: 754 HEQLCLHQ 761

[Close]

BLAST of Cla004400 vs. TrEMBL
Match: A0A068TN83_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014835001 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-21
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1   MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 60
           MPVVDKLPALLREDLESAF+ +LDNVFDITNL HSL Q+KR+ E+ELRRIKRLKEKFR +
Sbjct: 634 MPVVDKLPALLREDLESAFQDDLDNVFDITNLRHSLGQQKREVEIELRRIKRLKEKFRQI 693

Query: 61  HQQLI 66
           H+QLI
Sbjct: 694 HEQLI 698

[Close]

BLAST of Cla004400 vs. NCBI nr
Match: gi|659110513|ref|XP_008455264.1| (PREDICTED: dynamin-like protein ARC5 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 4.8e-35
Identity = 78/81 (96.30%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1   MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 60
           MPVVDKLPALLREDL+SAFE+ELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV
Sbjct: 691 MPVVDKLPALLREDLDSAFENELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 750

Query: 61  HQQLILQQSKPEVKTGEGDTK 82
           HQQLILQQSKPE+KTGEGDTK
Sbjct: 751 HQQLILQQSKPEMKTGEGDTK 771

[Close]

BLAST of Cla004400 vs. NCBI nr
Match: gi|449438153|ref|XP_004136854.1| (PREDICTED: dynamin-like protein ARC5 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 1


Query: 1   MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 60
           MPVVDKLPALLREDLESAFE+ELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV
Sbjct: 691 MPVVDKLPALLREDLESAFENELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 750

Query: 61  HQQLILQQSKPEVKTGEGDTK 82
           HQQLILQQSKPE+KT EGDTK
Sbjct: 751 HQQLILQQSKPEMKTREGDTK 771

[Close]

BLAST of Cla004400 vs. NCBI nr
Match: gi|590688733|ref|XP_007043032.1| (P-loop containing nucleoside triphosphate hydrolases superfamily protein [Theobroma cacao])

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-22
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 1


Query: 1   MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 60
           MPVVDKLPALLREDLESAF  ++DNVFDITNL HSL QRKRD E+EL+RIKRLKEKFRV+
Sbjct: 686 MPVVDKLPALLREDLESAFADDMDNVFDITNLRHSLGQRKRDTEIELKRIKRLKEKFRVI 745

Query: 61  HQQLILQQSKP 72
           HQQL   Q  P
Sbjct: 746 HQQLSSCQQIP 756

[Close]

BLAST of Cla004400 vs. NCBI nr
Match: gi|702468760|ref|XP_010030071.1| (PREDICTED: dynamin-like protein ARC5 [Eucalyptus grandis])

HSP 1 Score: 112.1 bits (279), Expect = 4.7e-22
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1   MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 60
           MPV+DKLPALLREDLESAFE +LDNVFDITNL HSL QRKRD E+EL+RIKRLKEKFR +
Sbjct: 689 MPVIDKLPALLREDLESAFEDDLDNVFDITNLRHSLGQRKRDVEIELKRIKRLKEKFRRI 748

Query: 61  HQQLILQQ 69
           H+QL  +Q
Sbjct: 749 HEQLSTRQ 756

[Close]

BLAST of Cla004400 vs. NCBI nr
Match: gi|951036534|ref|XP_014516642.1| (PREDICTED: dynamin-like protein ARC5 [Vigna radiata var. radiata])

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-21
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 1


Query: 1   MPVVDKLPALLREDLESAFESELDNVFDITNLVHSLSQRKRDAEVELRRIKRLKEKFRVV 60
           MP+VDKLPALLREDLESAFE +LDNVFDITNL HS  Q+KRD E+EL+RI+RLKEKFR++
Sbjct: 706 MPIVDKLPALLREDLESAFEDDLDNVFDITNLQHSFGQQKRDTEIELKRIQRLKEKFRMI 765

Query: 61  HQQLILQQ 69
           H+QLI  Q
Sbjct: 766 HEQLIQNQ 773

The following BLAST results are available for this feature:

BLAST of Cla004400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARC5_ARATH	7.4e-20	70.31	Dynamin-like protein ARC5 OS=Arabidopsis thaliana GN=ARC5 PE=1 SV=2	[more]

BLAST of Cla004400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2F7_CUCSA	1.3e-34	96.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G051430 PE=3 SV=1	[more]
A0A061E9A3_THECC	1.9e-22	78.87	P-loop containing nucleoside triphosphate hydrolases superfamily protein OS=Theo...	[more]
A0A059ATF5_EUCGR	3.2e-22	79.41	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02694 PE=3 SV=1	[more]
F6H1S1_VITVI	9.4e-22	79.41	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00490 PE=3 SV=...	[more]
A0A068TN83_COFCA	1.2e-21	81.54	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014835001 PE=3 SV=1	[more]

BLAST of Cla004400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110513\|ref\|XP_008455264.1\|	4.8e-35	96.30	PREDICTED: dynamin-like protein ARC5 [Cucumis melo]	[more]
gi\|449438153\|ref\|XP_004136854.1\|	1.8e-34	96.30	PREDICTED: dynamin-like protein ARC5 [Cucumis sativus]	[more]
gi\|590688733\|ref\|XP_007043032.1\|	2.7e-22	78.87	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Theobr...	[more]
gi\|702468760\|ref\|XP_010030071.1\|	4.7e-22	79.41	PREDICTED: dynamin-like protein ARC5 [Eucalyptus grandis]	[more]
gi\|951036534\|ref\|XP_014516642.1\|	1.0e-21	76.47	PREDICTED: dynamin-like protein ARC5 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022812	Dynamin_SF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0008152	metabolic process
biological_process	GO:0016559	peroxisome fission
cellular_component	GO:0009707	chloroplast outer membrane
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0042802	identical protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004400	Cla004400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022812	Dynamin superfamily	PANTHER	PTHR11566	DYNAMIN	coord: 1..68 score: 2.4
None	No IPR available	unknown	Coil	Coil	coord: 33..56 scor
None	No IPR available	PANTHER	PTHR11566:SF78	DYNAMIN-LIKE PROTEIN ARC5	coord: 1..68 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004400	Silver-seed gourd	carwmB0734
Cla004400	Cucumber (Chinese Long) v3	cucwmB599
Cla004400	Watermelon (97103) v2	wmwmbB046
Cla004400	Wax gourd	wgowmB246
Cla004400	Wax gourd	wgowmB262
Cla004400	Cucumber (Gy14) v1	cgywmB621
Cla004400	Cucurbita maxima (Rimu)	cmawmB080
Cla004400	Cucurbita maxima (Rimu)	cmawmB475
Cla004400	Cucurbita moschata (Rifu)	cmowmB070
Cla004400	Cucurbita moschata (Rifu)	cmowmB467
Cla004400	Wild cucumber (PI 183967)	cpiwmB592
Cla004400	Watermelon (Charleston Gray)	wcgwmB012
Cla004400	Watermelon (Charleston Gray)	wcgwmB011
Cla004400	Cucumber (Chinese Long) v2	cuwmB573
Cla004400	Cucurbita pepo (Zucchini)	cpewmB239
Cla004400	Cucurbita pepo (Zucchini)	cpewmB631
Cla004400	Bottle gourd (USVL1VR-Ls)	lsiwmB228
Cla004400	Cucumber (Gy14) v2	cgybwmB536