Cla004380 (gene) Watermelon (97103) v1

Overview
NameCla004380
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description29 kDa ribonucleoprotein, chloroplastic (AHRD V1 *-*- ROC2_ARATH)
LocationChr9 : 27050451 .. 27052307 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCCTTAAAACAAAAGCAAGAACACTCAACCACACTAATGAATGATGAAGAAATTATGGCAACCATTTTAGGGAAAAATCCTTCGTATGTTAATGGGATGGGATACGAACCAAAACCTCCACGAAGTCAAAAAGAAATGTACTCACAAGATTATGTCCAATCACTAGAGGCAGGCCTTGCACAGACTCAAGAACTTGTGGAGAGTGAACGTTGGGAGAATGAGAGAAATAGAGTCATTGTGGAAGAAGCTCTACAAAGTCAACGTATTCAATTTGAGATGCAGCGTGAAGAAAACGAGAAAATGCTCAGTCAAATGAATGAAATTCTAGAAAGGTTCACCGAGGGAAGTTCATCTCTTAGTAAGGTAACTTTATTAGTTTCAACTTAAAGTTATGAATATCAAAAATAGAATACTTCTAGAAATGTGCAAATTTGTTGATGTTTATATTGTGACTTGTACATTTATTTGCGCAGGATTAAATTGTACTTGTAGAGTGGCAAGCCTTTCTCGATCGAGGAATACATGTATGTATTTTGTAATGGATCTTGTAATTGGATCGAACAAAAGGTATATATATATATATATATATATTGTAATGAATCTTAATTAAAGATTAAATATATGCCTAAATACTTTATAATATTTGGTCTAATTTCATACTTTAAATACGACTATTTTTTTTAATTATTATTTCAATTTGCGACGAAATTTAAATCATCGCAATAACTCGTTACAATGCAACGTTGGGCAAAAACTGCAACTTCGCAAATCAAGAAAAACGTCCATTTAGCGACGTTAAAATAAAAGTCGCAAACTGCGACGTTATGGTAAACGTCGCAACTTGCAACGTAACGATAAAGGTCGCAAGCTGCGACGCAACGTAAACGTCGCAACCTGCGACGTAATGATAAAAAGTCGCAAGCTGCGACGCGACGATAAACGTCGCAGACTGCGACGTTATGATAAACGTCGCAGGTAGCGACGGTTTTCTTTGTTCGTTGCAAATTGCGACGTTTTCGTACGCAACGTCGCAAAAAGTTTTCATCGACGTGGATTTACAAAATTTGCGTCGCTAAAGCCCAAATTTCTTATAGTGTGCAGTAGCTACGAACTGATGTCACACCTTCTCCCAAATTACCCTCTTGAGGATATCTACTATTAAGCTCGTGAATTTAAACACCTGATAAACACCTCTTAAACTCGTGAATTTAAACACTTGAGAAATAGTTCATAAACAATGGATAACAACTCACCTACACTTATATACATGCCATAAATAATTTACATAGTCCTGTTCAACCACAATCTTAGATCATCCACACAATACACAAATTTACAACTCACAACCTCTGATGTATAATGCACAAGTCTTAGTTACAAATTTATACAAGGCCTACAAACTAGAGGTTTGTGTAAGCTAAGCACGGCGAACTTGTTCACTACCTGAAAAATAGAAAATTTAAAGAAAATCGGTGAGCTAGGTTTTTTTCATCTTCTCTCTCACTTCTCCTTCTCTCCATCTCTCCTCCTTCTCCTTCGTTCTCACATCCAACCCTAAAGTTGCACATTCAGTCTTCAACCACCACCTGCGTCAAGTCCTCACCTTCTCCTCGCTTTGTCCAAAATGTTGCTGTCTCATCCGATTACAACCAGGAAGAAGACACTCTTGAGGCTGATGGAGAAGATTCTAGCTACGCTCTTCACCTCAAACTGTTCGTCGGAAATCTTCATTTCAGCGTTGACAGTGCTCAACTCACCGGCTTGTTTGAAAGTGTAGGACAAATTGAAGGGGCCAAAAGCTTCAAGCTCCTTCGAGCAGCGTCATTCGAGCCCATAACGCCGTTGAAGTAG

mRNA sequence

ATGGTTGCCTTAAAACAAAAGCAAGAACACTCAACCACACTAATGAATGATGAAGAAATTATGGCAACCATTTTAGGGAAAAATCCTTCGTATGTTAATGGGATGGGATACGAACCAAAACCTCCACGAAGTCAAAAAGAAATGTACTCACAAGATTATGTCCAATCACTAGAGGCAGGCCTTGCACAGACTCAAGAACTTGTGGAGAGTGAACGTTGGGAGAATGAGAGAAATAGAGTCATTGTGGAAGAAGCTCTACAAAGTCAACGTATTCAATTTGAGATGCAGCGTGAAGAAAACGAGAAAATGCTCAGTCAAATGAATGAAATTCTAGAAAGGTTCACCGAGGGAAGTTCATCTCTTAGTAAGTCTTCAACCACCACCTGCGTCAAGTCCTCACCTTCTCCTCGCTTTGTCCAAAATGTTGCTGTCTCATCCGATTACAACCAGGAAGAAGACACTCTTGAGGCTGATGGAGAAGATTCTAGCTACGCTCTTCACCTCAAACTGTTCGTCGGAAATCTTCATTTCAGCGTTGACAGTGCTCAACTCACCGGCTTGTTTGAAAGTGTAGGACAAATTGAAGGGGCCAAAAGCTTCAAGCTCCTTCGAGCAGCGTCATTCGAGCCCATAACGCCGTTGAAGTAG

Coding sequence (CDS)

ATGGTTGCCTTAAAACAAAAGCAAGAACACTCAACCACACTAATGAATGATGAAGAAATTATGGCAACCATTTTAGGGAAAAATCCTTCGTATGTTAATGGGATGGGATACGAACCAAAACCTCCACGAAGTCAAAAAGAAATGTACTCACAAGATTATGTCCAATCACTAGAGGCAGGCCTTGCACAGACTCAAGAACTTGTGGAGAGTGAACGTTGGGAGAATGAGAGAAATAGAGTCATTGTGGAAGAAGCTCTACAAAGTCAACGTATTCAATTTGAGATGCAGCGTGAAGAAAACGAGAAAATGCTCAGTCAAATGAATGAAATTCTAGAAAGGTTCACCGAGGGAAGTTCATCTCTTAGTAAGTCTTCAACCACCACCTGCGTCAAGTCCTCACCTTCTCCTCGCTTTGTCCAAAATGTTGCTGTCTCATCCGATTACAACCAGGAAGAAGACACTCTTGAGGCTGATGGAGAAGATTCTAGCTACGCTCTTCACCTCAAACTGTTCGTCGGAAATCTTCATTTCAGCGTTGACAGTGCTCAACTCACCGGCTTGTTTGAAAGTGTAGGACAAATTGAAGGGGCCAAAAGCTTCAAGCTCCTTCGAGCAGCGTCATTCGAGCCCATAACGCCGTTGAAGTAG

Protein sequence

MVALKQKQEHSTTLMNDEEIMATILGKNPSYVNGMGYEPKPPRSQKEMYSQDYVQSLEAGLAQTQELVESERWENERNRVIVEEALQSQRIQFEMQREENEKMLSQMNEILERFTEGSSSLSKSSTTTCVKSSPSPRFVQNVAVSSDYNQEEDTLEADGEDSSYALHLKLFVGNLHFSVDSAQLTGLFESVGQIEGAKSFKLLRAASFEPITPLK
Homology
[Close]
BLAST of Cla004380 vs. Swiss-Prot
Match: CP29A_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP29A PE=2 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-13
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 1 

Query: 120 SLSKSSTTTCVKSSPSP-RFVQNVAVSSDYNQEEDTLEADGEDS------SYALHLKLFV 179
           S+  SS   C   +  P RFV+NVAVSSD+  EED + ADG+DS      S++  LKLFV
Sbjct: 44  SIFASSALKCSSPAEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFV 103

Query: 180 GNLHFSVDSAQLTGLFESVGQIE 196
           GNL F+VDSAQL  LFES G +E
Sbjct: 104 GNLSFNVDSAQLAQLFESAGNVE 126

[Close]
BLAST of Cla004380 vs. Swiss-Prot
Match: CP29B_ARATH (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-10
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1 

Query: 132 SSPSPRFVQNVAVSSDYNQEEDTLE--ADGEDSSYALHLKLFVGNLHFSVDSAQLTGLFE 191
           +SP+ RF +NVA++S++  EED     A  ++ S++  LKLFVGNL F+VDSAQL  LFE
Sbjct: 53  NSPASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFE 112

Query: 192 SVGQIE 196
           S G +E
Sbjct: 113 SAGNVE 118

[Close]
BLAST of Cla004380 vs. Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-08
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 1 

Query: 108 NEILERFTEGSSSLSKSSTTTCVKSSPSPR-----FVQNVAVSSDYNQEEDTLEADGEDS 167
           N  L  F+  SSSL+ S +++ +  S S +     F   VA+S D++Q ED +E   E  
Sbjct: 25  NSTLSFFSLPSSSLNLSLSSSSIGHSASIKPFESSFSTRVALS-DFDQLEDDVEV-AEQP 84

Query: 168 SYALHLKLFVGNLHFSVDSAQLTGLFESVGQIE 196
            ++  LKLFVGNL FSVDSA L GLFE  G +E
Sbjct: 85  RFSEDLKLFVGNLPFSVDSAALAGLFERAGNVE 115

[Close]
BLAST of Cla004380 vs. Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 42/92 (45.65%), Postives = 48/92 (52.17%), Query Frame = 1 

Query: 108 NEILERFTEGSSSL----SKSSTTTCVKSSPSPRFVQNVAVSSDYNQEEDTLEADGEDSS 167
           N  L  F+  SSSL    S SST  C        F   VA+S  ++Q ED +E   E   
Sbjct: 25  NSTLSFFSLPSSSLNLSLSSSSTGLCSIKPFESSFSTRVALSG-FDQLEDDVEV-AEQPR 84

Query: 168 YALHLKLFVGNLHFSVDSAQLTGLFESVGQIE 196
           ++  LKLFVGNL FSVDSA L GLFE  G +E
Sbjct: 85  FSEDLKLFVGNLPFSVDSAALAGLFERAGNVE 114

[Close]
BLAST of Cla004380 vs. Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-07
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 1 

Query: 118 SSSLSKSSTTTCVKSSPSPRFVQNVAVSSDYNQEEDTLEADG---EDSSYALHLKLFVGN 177
           S +LS SS+++C  S    RFV+ V +S D++Q ED  + D    E+ +++  LK+FVGN
Sbjct: 39  SLNLSLSSSSSCFSS----RFVRKVTLS-DFDQIEDVEDGDDGVEEERNFSPDLKIFVGN 98

Query: 178 LHFSVDSAQLTGLFESVGQIE 196
           L FS DSA L  LFE  G +E
Sbjct: 99  LPFSADSAALAELFERAGNVE 114

[Close]
BLAST of Cla004380 vs. TrEMBL
Match: A0A0A0LAY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G740070 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.4e-17
Identity = 60/105 (57.14%), Postives = 68/105 (64.76%), Query Frame = 1 

Query: 102 KMLSQMNEILERFT-EGSSSLSKSSTTTCVKS--------SP--SPRFVQNVAVSSDYNQ 161
           K LS  N   + F+   SSS+   S    + S        SP  S RFV+NVAVSSDY Q
Sbjct: 16  KTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFSSRFVRNVAVSSDYGQ 75

Query: 162 EEDTLEADGEDSSYALHLKLFVGNLHFSVDSAQLTGLFESVGQIE 196
           EE TLE DG+DSSYA  LKLFVGNL F+VDSAQL GLFES GQ+E
Sbjct: 76  EEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

[Close]
BLAST of Cla004380 vs. TrEMBL
Match: M5WC45_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009295mg PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-12
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 120 SLSKSSTTTCVKSSPSPRFVQNVAVSSDYNQEEDTLEADGEDSSYALHLKLFVGNLHFSV 179
           S+S S   +    S S RFV+NVAVSS++ Q+E+ L  DGE +S+A  LKLFVGNL FSV
Sbjct: 68  SISASFLNSGRFQSASSRFVRNVAVSSEFEQDEEVLSDDGE-ASFAPDLKLFVGNLPFSV 127

Query: 180 DSAQLTGLFESVGQIE 196
           DSAQL GLFES G +E
Sbjct: 128 DSAQLAGLFESAGNVE 142

[Close]
BLAST of Cla004380 vs. TrEMBL
Match: D7LUI4_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_348440 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 1 

Query: 120 SLSKSSTTTCVKSSPSP-RFVQNVAVSSDYNQEEDTLEADGEDS------SYALHLKLFV 179
           SL  SS   C   +  P RFV+NVAVSSD+  EED + ADG+DS      S++  LKLFV
Sbjct: 44  SLFASSAVKCSSPAEYPLRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFV 103

Query: 180 GNLHFSVDSAQLTGLFESVGQIE 196
           GNL F+VDSAQL  LFES G +E
Sbjct: 104 GNLSFNVDSAQLAQLFESAGNVE 126

[Close]
BLAST of Cla004380 vs. TrEMBL
Match: B9S0K6_RICCO (Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1355620 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 1 

Query: 133 SPSPRFVQNVAVSSDYNQEEDTLEADGEDSSYALHLKLFVGNLHFSVDSAQLTGLFESVG 192
           S S RFV +VA+SS++ QEED + +DG++SS++  LKLFVGNL F+VDSAQL GLFES G
Sbjct: 58  SSSSRFVPSVAISSEFGQEED-VSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGLFESAG 117

Query: 193 QIE 196
            +E
Sbjct: 118 NVE 119

[Close]
BLAST of Cla004380 vs. TrEMBL
Match: R0H518_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10017634mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-11
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 1 

Query: 120 SLSKSSTTTCVKSSPSPRFVQNVAVSSDYNQEEDTLEADGEDS------SYALHLKLFVG 179
           SL  SS+  C     S RFV+NVAVSSD+  EED + ADG+DS      S++  LKLFVG
Sbjct: 44  SLFASSSLKC-----SSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERTSFSPDLKLFVG 103

Query: 180 NLHFSVDSAQLTGLFESVGQIE 196
           NL F+VDSAQL  LFES G +E
Sbjct: 104 NLSFNVDSAQLAQLFESAGNVE 120

[Close]
BLAST of Cla004380 vs. NCBI nr
Match: gi|659084060|ref|XP_008442686.1| (PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 2.8e-18
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 132 SSP-SPRFVQNVAVSSDYNQEEDTLEADGEDSSYALHLKLFVGNLHFSVDSAQLTGLFES 191
           SSP S RFV+NVAVSSDY+QEEDTLEADG+DS YA  LKLFVGNL FSVDSAQL GLFES
Sbjct: 55  SSPFSSRFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFES 114

Query: 192 VGQIE 196
            GQ+E
Sbjct: 115 AGQVE 119

[Close]
BLAST of Cla004380 vs. NCBI nr
Match: gi|449440111|ref|XP_004137828.1| (PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 9.2e-17
Identity = 60/105 (57.14%), Postives = 68/105 (64.76%), Query Frame = 1 

Query: 102 KMLSQMNEILERFT-EGSSSLSKSSTTTCVKS--------SP--SPRFVQNVAVSSDYNQ 161
           K LS  N   + F+   SSS+   S    + S        SP  S RFV+NVAVSSDY Q
Sbjct: 16  KTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFSSRFVRNVAVSSDYGQ 75

Query: 162 EEDTLEADGEDSSYALHLKLFVGNLHFSVDSAQLTGLFESVGQIE 196
           EE TLE DG+DSSYA  LKLFVGNL F+VDSAQL GLFES GQ+E
Sbjct: 76  EEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

[Close]
BLAST of Cla004380 vs. NCBI nr
Match: gi|645277805|ref|XP_008243948.1| (PREDICTED: ribonucleoprotein At2g37220, chloroplastic [Prunus mume])

HSP 1 Score: 80.5 bits (197), Expect = 4.0e-12
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 120 SLSKSSTTTCVKSSPSPRFVQNVAVSSDYNQEEDTLEADGEDSSYALHLKLFVGNLHFSV 179
           S+S S   +    S S RFV+NVAVSS++ Q+E+ L  DGE +S+A  LKLFVGNL FSV
Sbjct: 46  SISASFLNSRRFQSASSRFVRNVAVSSEFEQDEEVLSDDGE-ASFAPDLKLFVGNLPFSV 105

Query: 180 DSAQLTGLFESVGQIE 196
           DSAQL GLFES G +E
Sbjct: 106 DSAQLAGLFESAGNVE 120

[Close]
BLAST of Cla004380 vs. NCBI nr
Match: gi|595826887|ref|XP_007205644.1| (hypothetical protein PRUPE_ppa009295mg [Prunus persica])

HSP 1 Score: 80.5 bits (197), Expect = 4.0e-12
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1 

Query: 120 SLSKSSTTTCVKSSPSPRFVQNVAVSSDYNQEEDTLEADGEDSSYALHLKLFVGNLHFSV 179
           S+S S   +    S S RFV+NVAVSS++ Q+E+ L  DGE +S+A  LKLFVGNL FSV
Sbjct: 68  SISASFLNSGRFQSASSRFVRNVAVSSEFEQDEEVLSDDGE-ASFAPDLKLFVGNLPFSV 127

Query: 180 DSAQLTGLFESVGQIE 196
           DSAQL GLFES G +E
Sbjct: 128 DSAQLAGLFESAGNVE 142

[Close]
BLAST of Cla004380 vs. NCBI nr
Match: gi|727501950|ref|XP_010426996.1| (PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Camelina sativa])

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 1 

Query: 120 SLSKSSTTTCVKSSPSPRFVQNVAVSSDYNQEEDTLEADGEDS------SYALHLKLFVG 179
           SL  SS+  C  SSP+ RFV+NVAVSSD+  EED + ADG+DS      S++  LKLFVG
Sbjct: 45  SLFASSSLKC--SSPA-RFVRNVAVSSDFEVEEDDMFADGDDSAPVERSSFSPDLKLFVG 104

Query: 180 NLHFSVDSAQLTGLFESVGQIE 196
           NL F+VDSAQL  LFES G +E
Sbjct: 105 NLSFNVDSAQLAQLFESAGNVE 123

The following BLAST results are available for this feature:
BLAST of Cla004380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CP29A_ARATH2.1e-1354.2229 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP29A PE=2 SV... [more]
CP29B_ARATH3.7e-1051.52RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 S... [more]
ROC2_NICPL5.9e-0844.0931 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1[more]
ROC2_NICSY1.3e-0745.6529 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1[more]
ROC1_NICSY1.7e-0744.4429 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1[more]
BLAST of Cla004380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAY6_CUCSA6.4e-1757.14Uncharacterized protein OS=Cucumis sativus GN=Csa_3G740070 PE=4 SV=1[more]
M5WC45_PRUPE2.8e-1259.21Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009295mg PE=4 SV=1[more]
D7LUI4_ARALL1.1e-1155.42Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
B9S0K6_RICCO1.4e-1161.90Ribonucleoprotein, chloroplast, putative OS=Ricinus communis GN=RCOM_1355620 PE=... [more]
R0H518_9BRAS2.3e-1156.10Uncharacterized protein OS=Capsella rubella GN=CARUB_v10017634mg PE=4 SV=1[more]
BLAST of Cla004380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659084060|ref|XP_008442686.1|2.8e-1881.54PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo][more]
gi|449440111|ref|XP_004137828.1|9.2e-1757.14PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus][more]
gi|645277805|ref|XP_008243948.1|4.0e-1259.21PREDICTED: ribonucleoprotein At2g37220, chloroplastic [Prunus mume][more]
gi|595826887|ref|XP_007205644.1|4.0e-1259.21hypothetical protein PRUPE_ppa009295mg [Prunus persica][more]
gi|727501950|ref|XP_010426996.1|1.2e-1158.54PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Camelina sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004380Cla004380.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 146..198
score: 2.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 162..198
score: 1.6
NoneNo IPR availableunknownCoilCoilcoord: 93..113
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla004380Cucumber (Gy14) v1cgywmB621
Cla004380Cucurbita maxima (Rimu)cmawmB475
Cla004380Cucurbita moschata (Rifu)cmowmB070
Cla004380Cucurbita moschata (Rifu)cmowmB467
Cla004380Wild cucumber (PI 183967)cpiwmB592
Cla004380Watermelon (Charleston Gray)wcgwmB011
Cla004380Cucurbita pepo (Zucchini)cpewmB239
Cla004380Cucurbita pepo (Zucchini)cpewmB631
Cla004380Bottle gourd (USVL1VR-Ls)lsiwmB228
Cla004380Cucumber (Gy14) v2cgybwmB536
Cla004380Silver-seed gourdcarwmB0734
Cla004380Cucumber (Chinese Long) v3cucwmB599
Cla004380Watermelon (97103) v2wmwmbB046
Cla004380Wax gourdwgowmB246
Cla004380Wax gourdwgowmB262