Cla004312 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004312
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	class I heat shock protein 3 (AHRD V1 ***- B6TDB5_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20
Location	Chr7 : 4133759 .. 4134238 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTTATTCCAAGCTTTTTCGGTGGCCGCCGGAGCAACGTCTTCGATCCCTTCTCCTTAGACCTTTGGGATCCATTTGAAGGCTTCCCATTTCCAACCACACTCGCCAACCTCCCTTCCTCTGCTCTTGAGACCTCTGCCTTTGCCAATACTCGCATCGATTGGAAAGAGACCCCCCAAGCCCACATCTTCAAGGCCGATCTTCCTGGTATCAAGAAGGAAGAAGTCAAAGTAGAAGTGGAAGAAGGCAGAGTGTTGCAAATCAGTGGAGAGAGGAGCAAAGAGCAGGAGGAGAAGAACGAAAAATGGCACAGAATTGAACGGAGCAGTGGGAAGTTCATGAGGAGATTCAGGCTGCCGGAGGATGCTAAAGTGGAGGAGGTGAAGGCAAGCATGGAGAATGGAGTTCTGACTGTGACAGTGCCCAAAGTGGAAGTGAAGAAGCCGGAAATCAAATCCATTGACATCTCTGGCTAG

mRNA sequence

ATGTCTCTTATTCCAAGCTTTTTCGGTGGCCGCCGGAGCAACGTCTTCGATCCCTTCTCCTTAGACCTTTGGGATCCATTTGAAGGCTTCCCATTTCCAACCACACTCGCCAACCTCCCTTCCTCTGCTCTTGAGACCTCTGCCTTTGCCAATACTCGCATCGATTGGAAAGAGACCCCCCAAGCCCACATCTTCAAGGCCGATCTTCCTGGTATCAAGAAGGAAGAAGTCAAAGTAGAAGTGGAAGAAGGCAGAGTGTTGCAAATCAGTGGAGAGAGGAGCAAAGAGCAGGAGGAGAAGAACGAAAAATGGCACAGAATTGAACGGAGCAGTGGGAAGTTCATGAGGAGATTCAGGCTGCCGGAGGATGCTAAAGTGGAGGAGGTGAAGGCAAGCATGGAGAATGGAGTTCTGACTGTGACAGTGCCCAAAGTGGAAGTGAAGAAGCCGGAAATCAAATCCATTGACATCTCTGGCTAG

Coding sequence (CDS)

ATGTCTCTTATTCCAAGCTTTTTCGGTGGCCGCCGGAGCAACGTCTTCGATCCCTTCTCCTTAGACCTTTGGGATCCATTTGAAGGCTTCCCATTTCCAACCACACTCGCCAACCTCCCTTCCTCTGCTCTTGAGACCTCTGCCTTTGCCAATACTCGCATCGATTGGAAAGAGACCCCCCAAGCCCACATCTTCAAGGCCGATCTTCCTGGTATCAAGAAGGAAGAAGTCAAAGTAGAAGTGGAAGAAGGCAGAGTGTTGCAAATCAGTGGAGAGAGGAGCAAAGAGCAGGAGGAGAAGAACGAAAAATGGCACAGAATTGAACGGAGCAGTGGGAAGTTCATGAGGAGATTCAGGCTGCCGGAGGATGCTAAAGTGGAGGAGGTGAAGGCAAGCATGGAGAATGGAGTTCTGACTGTGACAGTGCCCAAAGTGGAAGTGAAGAAGCCGGAAATCAAATCCATTGACATCTCTGGCTAG

Protein sequence

MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETPQAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRLPEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG

Homology

[Close]

BLAST of Cla004312 vs. Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.6e-69
Identity = 124/159 (77.99%), Postives = 144/159 (90.57%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           MS+IPSFFGGRRSNVFDPFSLD+WDPF+ FP  T+ A+      ET+AF NT IDWKETP
Sbjct: 1   MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSAS--EFGKETAAFVNTHIDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAH+FKADLPG+KKEEVKVE+EEG+VLQISGER+KE+EEKN+KWHR+ERSSGKF+RRFRL
Sbjct: 61  QAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PE+AKV+EVKA+M NGV+TVTVPKVE+KKPE+K+IDISG
Sbjct: 121 PENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157

[Close]

BLAST of Cla004312 vs. Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.2e-68
Identity = 120/161 (74.53%), Postives = 145/161 (90.06%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTL--ANLPSSALETSAFANTRIDWKE 60
           MSLIP+FFGGRR+NVFDPFSLD+WDPF+ FPFP TL  A+ P  + E SAF +TR+DWKE
Sbjct: 1   MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKE 60

Query: 61  TPQAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRF 120
           TP+AH+FKAD+PG+KKEEVKV++E+ +VLQISGER+ E+E+KN+ WHR+ERSSGKFMRRF
Sbjct: 61  TPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRF 120

Query: 121 RLPEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           RLPE+AKVE+VKASMENGVLTVTVPK EVKKP++K+I+ISG
Sbjct: 121 RLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161

[Close]

BLAST of Cla004312 vs. Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 255.0 bits (650), Expect = 5.5e-67
Identity = 120/159 (75.47%), Postives = 141/159 (88.68%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           MSLIPS FGGRR+NVFDPFSLD++DPFEGF  P+ LAN P  A++ +AF N ++DW+ETP
Sbjct: 1   MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           +AH+FKADLPG++KEEVKVEVE+G +LQISGERS E EEKN+KWHR+ERSSGKF RRFRL
Sbjct: 61  EAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PE+AK+EE+KASMENGVL+VTVPKV  KKPE+KSIDISG
Sbjct: 121 PENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157

[Close]

BLAST of Cla004312 vs. Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.5e-67
Identity = 121/159 (76.10%), Postives = 137/159 (86.16%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           MS+IPSFFG RRSNV +PFSLD+WDPF+ +P  T+         ET+AFANT IDWKETP
Sbjct: 1   MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAH+FKADLPG+KKEEVKVEVEEG+VLQISGER+KE+EEKN KWHR+E SSGKF+RRFRL
Sbjct: 61  QAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PE+A V+EVKA MENGVLTVTVPKVE+KKPE+KSI ISG
Sbjct: 121 PENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159

[Close]

BLAST of Cla004312 vs. Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 7.1e-67
Identity = 121/159 (76.10%), Postives = 142/159 (89.31%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           MSLIPSFFGGRRSNVFDPFSLD+WDPF+ FPF  +  +  S   E SAF +TR+DWKETP
Sbjct: 1   MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSA-SFPRENSAFVSTRVDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           +AH+FKADLPG+KKEEVKVE+E+ RVLQISGERS E+E+KN++WHR+ERSSGKFMRRFRL
Sbjct: 61  EAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PE+AK+++VKA+MENGVLTVTVPK EVKKPE+K+IDISG
Sbjct: 121 PENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158

[Close]

BLAST of Cla004312 vs. TrEMBL
Match: H6TB47_CITLA (HSP18.1B OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.6e-84
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP
Sbjct: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAHIFKADLPGIKK+EVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL
Sbjct: 61  QAHIFKADLPGIKKDEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG
Sbjct: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 159

[Close]

BLAST of Cla004312 vs. TrEMBL
Match: H6TB42_CITLA (HSP18.1A OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.4e-77
Identity = 144/159 (90.57%), Postives = 152/159 (95.60%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           M+LIP+ FGGRRSNVFDPFSLD+WDPFEGFPF  +LANLPSSA ETSAFANTRIDWKETP
Sbjct: 1   MALIPTIFGGRRSNVFDPFSLDVWDPFEGFPFSNSLANLPSSARETSAFANTRIDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKE EEKN+KWHRIERSSGKFMRRFRL
Sbjct: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEHEEKNDKWHRIERSSGKFMRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PE+AK EEVKASMENGVLTVTVPK+E KKPE+KSIDISG
Sbjct: 121 PENAKAEEVKASMENGVLTVTVPKIEEKKPEVKSIDISG 159

[Close]

BLAST of Cla004312 vs. TrEMBL
Match: A0A0A0KLU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197620 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.0e-76
Identity = 143/159 (89.94%), Postives = 151/159 (94.97%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           M+L+PS FGGRRSNVFDPFSLD+WDPFEGFPF  +LAN PSSA ETSAFANTRIDWKETP
Sbjct: 1   MALVPSIFGGRRSNVFDPFSLDIWDPFEGFPFSNSLANAPSSARETSAFANTRIDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKN+KWHRIERS GKFMRRFRL
Sbjct: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRIERSCGKFMRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PE+AKVEEVKASMENGVLTV VPK+E KKPEIKSIDI+G
Sbjct: 121 PENAKVEEVKASMENGVLTVMVPKMEEKKPEIKSIDIAG 159

[Close]

BLAST of Cla004312 vs. TrEMBL
Match: A0A0A0KQE2_CUCSA (Chloroplast small heat shock protein class I OS=Cucumis sativus GN=Csa_5G190560 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 2.9e-75
Identity = 142/159 (89.31%), Postives = 151/159 (94.97%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           MS+IPSFF GRRSNVFDPFSLD+WDPFEGFPF  + AN PSSA +TSAFANTRI WKETP
Sbjct: 1   MSIIPSFFCGRRSNVFDPFSLDIWDPFEGFPFSDSFANAPSSAPQTSAFANTRIGWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKN+KWHRIERSSGKFMRRFRL
Sbjct: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRIERSSGKFMRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PE+AKVEEVKA++ENGVLTVTVPKVE KKPEI+SIDISG
Sbjct: 121 PENAKVEEVKANVENGVLTVTVPKVEEKKPEIRSIDISG 159

[Close]

BLAST of Cla004312 vs. TrEMBL
Match: A0A0A0KP10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190530 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-74
Identity = 140/158 (88.61%), Postives = 151/158 (95.57%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           MSLIPSFFGGRR+NVFDPFSLD+WDPF+GFPF  +L NLPSSA ETSAFANTRIDWKETP
Sbjct: 1   MSLIPSFFGGRRTNVFDPFSLDVWDPFQGFPFSNSLPNLPSSAPETSAFANTRIDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAHIF ADLPGI K+EVKVEV+EGRVLQISGERSKEQEEKN+KWHRIERSSG+FMRRFRL
Sbjct: 61  QAHIFTADLPGINKQEVKVEVQEGRVLQISGERSKEQEEKNDKWHRIERSSGQFMRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDIS 159
           PE+AKV+EVKASMENGVLTVTVPKVE KKPEIKSI+IS
Sbjct: 121 PENAKVDEVKASMENGVLTVTVPKVEEKKPEIKSIEIS 158

[Close]

BLAST of Cla004312 vs. NCBI nr
Match: gi|315932728|gb|ADU55794.1| (HSP18.1B [Citrullus lanatus])

HSP 1 Score: 319.3 bits (817), Expect = 3.8e-84
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP
Sbjct: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAHIFKADLPGIKK+EVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL
Sbjct: 61  QAHIFKADLPGIKKDEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG
Sbjct: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 159

[Close]

BLAST of Cla004312 vs. NCBI nr
Match: gi|659131157|ref|XP_008465538.1| (PREDICTED: 17.6 kDa class I heat shock protein 3-like [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 4.0e-78
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           MSLIPS FGGRRSNVFDPFSLD+WDPFEGFPF  +LAN+PSSA+ETSAFANTRIDWKETP
Sbjct: 1   MSLIPSIFGGRRSNVFDPFSLDIWDPFEGFPFSNSLANVPSSAVETSAFANTRIDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKN+KWHR+ERSSGKF RRFRL
Sbjct: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRVERSSGKFTRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PE+AKVEEVKA+MENGVLTVTVPKVE KKPEIKSIDISG
Sbjct: 121 PENAKVEEVKANMENGVLTVTVPKVEEKKPEIKSIDISG 159

[Close]

BLAST of Cla004312 vs. NCBI nr
Match: gi|315932718|gb|ADU55789.1| (HSP18.1A [Citrullus lanatus])

HSP 1 Score: 296.2 bits (757), Expect = 3.4e-77
Identity = 144/159 (90.57%), Postives = 152/159 (95.60%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           M+LIP+ FGGRRSNVFDPFSLD+WDPFEGFPF  +LANLPSSA ETSAFANTRIDWKETP
Sbjct: 1   MALIPTIFGGRRSNVFDPFSLDVWDPFEGFPFSNSLANLPSSARETSAFANTRIDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKE EEKN+KWHRIERSSGKFMRRFRL
Sbjct: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEHEEKNDKWHRIERSSGKFMRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PE+AK EEVKASMENGVLTVTVPK+E KKPE+KSIDISG
Sbjct: 121 PENAKAEEVKASMENGVLTVTVPKIEEKKPEVKSIDISG 159

[Close]

BLAST of Cla004312 vs. NCBI nr
Match: gi|659126469|ref|XP_008463198.1| (PREDICTED: 18.1 kDa class I heat shock protein-like [Cucumis melo])

HSP 1 Score: 295.4 bits (755), Expect = 5.8e-77
Identity = 145/159 (91.19%), Postives = 153/159 (96.23%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           M+LIPS FGGRRSNVFDPFSLD+WDPFEGF F  +LANLPSSA ETSAFANTRIDWKETP
Sbjct: 1   MALIPSIFGGRRSNVFDPFSLDIWDPFEGFSFSNSLANLPSSARETSAFANTRIDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKN+KWHRIERSSGKFMRRFRL
Sbjct: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRIERSSGKFMRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PE+AKVEEVKA+MENGVLTVTVPK+E KKPEIKSIDI+G
Sbjct: 121 PENAKVEEVKANMENGVLTVTVPKMEEKKPEIKSIDIAG 159

[Close]

BLAST of Cla004312 vs. NCBI nr
Match: gi|778701197|ref|XP_004150235.2| (PREDICTED: 18.1 kDa class I heat shock protein-like [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 2.9e-76
Identity = 143/159 (89.94%), Postives = 151/159 (94.97%), Query Frame = 1


Query: 1   MSLIPSFFGGRRSNVFDPFSLDLWDPFEGFPFPTTLANLPSSALETSAFANTRIDWKETP 60
           M+L+PS FGGRRSNVFDPFSLD+WDPFEGFPF  +LAN PSSA ETSAFANTRIDWKETP
Sbjct: 1   MALVPSIFGGRRSNVFDPFSLDIWDPFEGFPFSNSLANAPSSARETSAFANTRIDWKETP 60

Query: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRL 120
           QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKN+KWHRIERS GKFMRRFRL
Sbjct: 61  QAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRIERSCGKFMRRFRL 120

Query: 121 PEDAKVEEVKASMENGVLTVTVPKVEVKKPEIKSIDISG 160
           PE+AKVEEVKASMENGVLTV VPK+E KKPEIKSIDI+G
Sbjct: 121 PENAKVEEVKASMENGVLTVMVPKMEEKKPEIKSIDIAG 159

The following BLAST results are available for this feature:

BLAST of Cla004312 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HSP11_DAUCA	2.6e-69	77.99	17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1	[more]
HSP16_SOYBN	2.2e-68	74.53	18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1	[more]
HS17C_ARATH	5.5e-67	75.47	17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 S...	[more]
HSP12_DAUCA	5.5e-67	76.10	18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1	[more]
HSP12_MEDSA	7.1e-67	76.10	18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1	[more]

BLAST of Cla004312 vs. TrEMBL


Match Name	E-value	Identity	Description
H6TB47_CITLA	2.6e-84	99.37	HSP18.1B OS=Citrullus lanatus PE=2 SV=1	[more]
H6TB42_CITLA	2.4e-77	90.57	HSP18.1A OS=Citrullus lanatus PE=2 SV=1	[more]
A0A0A0KLU0_CUCSA	2.0e-76	89.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197620 PE=3 SV=1	[more]
A0A0A0KQE2_CUCSA	2.9e-75	89.31	Chloroplast small heat shock protein class I OS=Cucumis sativus GN=Csa_5G190560 ...	[more]
A0A0A0KP10_CUCSA	1.1e-74	88.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190530 PE=3 SV=1	[more]

BLAST of Cla004312 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|315932728\|gb\|ADU55794.1\|	3.8e-84	99.37	HSP18.1B [Citrullus lanatus]	[more]
gi\|659131157\|ref\|XP_008465538.1\|	4.0e-78	91.82	PREDICTED: 17.6 kDa class I heat shock protein 3-like [Cucumis melo]	[more]
gi\|315932718\|gb\|ADU55789.1\|	3.4e-77	90.57	HSP18.1A [Citrullus lanatus]	[more]
gi\|659126469\|ref\|XP_008463198.1\|	5.8e-77	91.19	PREDICTED: 18.1 kDa class I heat shock protein-like [Cucumis melo]	[more]
gi\|778701197\|ref\|XP_004150235.2\|	2.9e-76	89.94	PREDICTED: 18.1 kDa class I heat shock protein-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002068	A-crystallin/Hsp20_dom
IPR008978	HSP20-like_chaperone

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006457	protein folding
biological_process	GO:0051259	protein oligomerization
biological_process	GO:0009408	response to heat
biological_process	GO:0000302	response to reactive oxygen species
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0051082	unfolded protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU09981	watermelon EST collection version 2.0	transcribed_cluster
WMU14783	watermelon EST collection version 2.0	transcribed_cluster
WMU32063	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU37118	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU39425	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU77021	watermelon EST collection version 2.0	transcribed_cluster
WMU79704	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004312	Cla004312.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU39425	WMU39425	transcribed_cluster
WMU37118	WMU37118	transcribed_cluster
WMU77021	WMU77021	transcribed_cluster
WMU09981	WMU09981	transcribed_cluster
WMU14783	WMU14783	transcribed_cluster
WMU79704	WMU79704	transcribed_cluster
WMU32063	WMU32063	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 55..158 score: 1.2
IPR002068	Alpha crystallin/Hsp20 domain	PROFILE	PS01031	HSP20	coord: 55..144 score: 26
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 12..158 score: 4.7
IPR008978	HSP20-like chaperone	unknown	SSF49764	HSP20-like chaperones	coord: 28..159 score: 3.4
None	No IPR available	PANTHER	PTHR11527:SF152	SUBFAMILY NOT NAMED	coord: 11..159 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004312	Cla97C07G132280	Watermelon (97103) v2	wmwmbB167
Cla004312	Csa6G009400	Cucumber (Chinese Long) v2	cuwmB486
Cla004312	Csa5G190530	Cucumber (Chinese Long) v2	cuwmB387
Cla004312	MELO3C025131	Melon (DHL92) v3.5.1	mewmB052
Cla004312	MELO3C008263	Melon (DHL92) v3.5.1	mewmB314
Cla004312	ClCG10G021620	Watermelon (Charleston Gray)	wcgwmB065
Cla004312	CSPI05G10280	Wild cucumber (PI 183967)	cpiwmB395
Cla004312	Cucsa.164690	Cucumber (Gy14) v1	cgywmB307
Cla004312	CmaCh04G011520	Cucurbita maxima (Rimu)	cmawmB690
Cla004312	Lsi04G009450	Bottle gourd (USVL1VR-Ls)	lsiwmB302
Cla004312	Cp4.1LG01g11230	Cucurbita pepo (Zucchini)	cpewmB417
Cla004312	CsGy5G007630	Cucumber (Gy14) v2	cgybwmB359
Cla004312	MELO3C008263.2	Melon (DHL92) v3.6.1	medwmB309
Cla004312	CsaV3_5G008680	Cucumber (Chinese Long) v3	cucwmB410
Cla004312	Bhi07G000551	Wax gourd	wgowmB548

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla004312	Cla008197	Watermelon (97103) v1	wmwmB081
Cla004312	Cla006565	Watermelon (97103) v1	wmwmB111

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004312	Cucurbita maxima (Rimu)	cmawmB691
Cla004312	Cucurbita moschata (Rifu)	cmowmB684
Cla004312	Cucurbita moschata (Rifu)	cmowmB685
Cla004312	Watermelon (Charleston Gray)	wcgwmB365
Cla004312	Cucurbita pepo (Zucchini)	cpewmB418
Cla004312	Melon (DHL92) v3.6.1	medwmB054
Cla004312	Silver-seed gourd	carwmB0086