Cla004307 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004307
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	BZIP transcription factor (AHRD V1 **-- B5AEK5_ORYSJ)
Location	Chr5 : 9849002 .. 9849232 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTCTATCCAGTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGTTAAGAACTGTGCACCAGCAGCAACATCATCAGCAGCAGCAACCACAACAGCTACGGCCTTCTTCTAGTCATCGGCGTACTTCGAGCAAAGACCTTGACAATCAATTTGCTAACCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCGGTAACAGGTCCAGTGCGCAGTTAG

mRNA sequence

ATGAAACTCTATCCAGTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGTTAAGAACTGTGCACCAGCAGCAACATCATCAGCAGCAGCAACCACAACAGCTACGGCCTTCTTCTAGTCATCGGCGTACTTCGAGCAAAGACCTTGACAATCAATTTGCTAACCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCGGTAACAGGTCCAGTGCGCAGTTAG

Coding sequence (CDS)

ATGAAACTCTATCCAGTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGTTAAGAACTGTGCACCAGCAGCAACATCATCAGCAGCAGCAACCACAACAGCTACGGCCTTCTTCTAGTCATCGGCGTACTTCGAGCAAAGACCTTGACAATCAATTTGCTAACCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCGGTAACAGGTCCAGTGCGCAGTTAG

Protein sequence

MKLYPVEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGSSRDPVTGPVRS

Homology

[Close]

BLAST of Cla004307 vs. TrEMBL
Match: A0A0A0L9F3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G225830 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-27
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 6   VEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 65
           +EQEVLEREIGRLRTVHQQ H QQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS
Sbjct: 394 LEQEVLEREIGRLRTVHQQ-HQQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 453

Query: 66  SRDPVTGPVRS 77
           SRD VTGPVRS
Sbjct: 454 SRDSVTGPVRS 463

[Close]

BLAST of Cla004307 vs. TrEMBL
Match: A5B6S2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00620 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.3e-20
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1


Query: 6   VEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 65
           +EQEVLEREIGRLR+++ QQ  QQQQPQQ +P+SSHRR+SS+DLD QFANLSLK KD+ S
Sbjct: 304 LEQEVLEREIGRLRSLYHQQQQQQQQPQQQQPASSHRRSSSRDLDAQFANLSLKHKDNSS 363

Query: 66  SRDPVTGPVR 76
             D VTGP+R
Sbjct: 364 GTDAVTGPLR 373

[Close]

BLAST of Cla004307 vs. TrEMBL
Match: A0A067KV23_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04965 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-19
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 1


Query: 6   VEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 65
           +E EVLEREIGRLR ++QQQ  Q QQ QQ +PSSSHRRT+S+DL++QFANLSLKQKD+ S
Sbjct: 308 LEHEVLEREIGRLRALYQQQQQQPQQQQQ-QPSSSHRRTNSRDLESQFANLSLKQKDANS 367

Query: 66  SRDPVTGPVRS 77
            RDPVTGP+R+
Sbjct: 368 GRDPVTGPLRT 377

[Close]

BLAST of Cla004307 vs. TrEMBL
Match: A0A0D2VAA5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G039300 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 50/70 (71.43%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 6   VEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 65
           +EQEVLEREIGRLR ++QQQ +QQQ PQQ + SSSHRR+SS+DLD+QFANLS+K+KD+ S
Sbjct: 310 LEQEVLEREIGRLRVLYQQQQNQQQ-PQQKQQSSSHRRSSSRDLDSQFANLSVKEKDTSS 369

Query: 66  SRDPVTGPVR 76
           S D VTGP+R
Sbjct: 370 SHDTVTGPLR 378

[Close]

BLAST of Cla004307 vs. TrEMBL
Match: A0A0D2W2M5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G039300 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 50/70 (71.43%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 6   VEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 65
           +EQEVLEREIGRLR ++QQQ +QQQ PQQ + SSSHRR+SS+DLD+QFANLS+K+KD+ S
Sbjct: 281 LEQEVLEREIGRLRVLYQQQQNQQQ-PQQKQQSSSHRRSSSRDLDSQFANLSVKEKDTSS 340

Query: 66  SRDPVTGPVR 76
           S D VTGP+R
Sbjct: 341 SHDTVTGPLR 349

[Close]

BLAST of Cla004307 vs. NCBI nr
Match: gi|659112056|ref|XP_008456043.1| (PREDICTED: uncharacterized protein At4g06598 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-28
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 1


Query: 6   VEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 65
           +EQEVLEREIGRLRTVHQQ H QQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS
Sbjct: 307 LEQEVLEREIGRLRTVHQQ-HQQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 366

Query: 66  SRDPVTGPVRS 77
           SRDPVTGPVRS
Sbjct: 367 SRDPVTGPVRS 376

[Close]

BLAST of Cla004307 vs. NCBI nr
Match: gi|449457035|ref|XP_004146254.1| (PREDICTED: uncharacterized protein At4g06598 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 6   VEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 65
           +EQEVLEREIGRLRTVHQQ H QQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS
Sbjct: 308 LEQEVLEREIGRLRTVHQQ-HQQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 367

Query: 66  SRDPVTGPVRS 77
           SRD VTGPVRS
Sbjct: 368 SRDSVTGPVRS 377

[Close]

BLAST of Cla004307 vs. NCBI nr
Match: gi|700202471|gb|KGN57604.1| (hypothetical protein Csa_3G225830 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 1


Query: 6   VEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 65
           +EQEVLEREIGRLRTVHQQ H QQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS
Sbjct: 394 LEQEVLEREIGRLRTVHQQ-HQQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 453

Query: 66  SRDPVTGPVRS 77
           SRD VTGPVRS
Sbjct: 454 SRDSVTGPVRS 463

[Close]

BLAST of Cla004307 vs. NCBI nr
Match: gi|225448176|ref|XP_002266061.1| (PREDICTED: uncharacterized protein At4g06598 [Vitis vinifera])

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1


Query: 6   VEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 65
           +EQEVLEREIGRLR+++ QQ  QQQQPQQ +P+SSHRR+SS+DLD QFANLSLK KD+ S
Sbjct: 304 LEQEVLEREIGRLRSLYHQQQQQQQQPQQQQPASSHRRSSSRDLDAQFANLSLKHKDNSS 363

Query: 66  SRDPVTGPVR 76
             D VTGP+R
Sbjct: 364 GTDAVTGPLR 373

[Close]

BLAST of Cla004307 vs. NCBI nr
Match: gi|802591888|ref|XP_012071280.1| (PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas])

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 1


Query: 6   VEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGS 65
           +E EVLEREIGRLR ++QQQ  Q QQ QQ +PSSSHRRT+S+DL++QFANLSLKQKD+ S
Sbjct: 308 LEHEVLEREIGRLRALYQQQQQQPQQQQQ-QPSSSHRRTNSRDLESQFANLSLKQKDANS 367

Query: 66  SRDPVTGPVRS 77
            RDPVTGP+R+
Sbjct: 368 GRDPVTGPLRT 377

The following BLAST results are available for this feature:

BLAST of Cla004307 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9F3_CUCSA	1.1e-27	94.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G225830 PE=4 SV=1	[more]
A5B6S2_VITVI	8.3e-20	71.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00620 PE=4 SV=...	[more]
A0A067KV23_JATCU	1.4e-19	71.83	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04965 PE=4 SV=1	[more]
A0A0D2VAA5_GOSRA	1.2e-18	71.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G039300 PE=4 SV=1	[more]
A0A0D2W2M5_GOSRA	1.2e-18	71.43	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G039300 PE=4 SV=1	[more]

BLAST of Cla004307 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112056\|ref\|XP_008456043.1\|	1.8e-28	95.77	PREDICTED: uncharacterized protein At4g06598 [Cucumis melo]	[more]
gi\|449457035\|ref\|XP_004146254.1\|	1.5e-27	94.37	PREDICTED: uncharacterized protein At4g06598 [Cucumis sativus]	[more]
gi\|700202471\|gb\|KGN57604.1\|	1.5e-27	94.37	hypothetical protein Csa_3G225830 [Cucumis sativus]	[more]
gi\|225448176\|ref\|XP_002266061.1\|	1.2e-19	71.43	PREDICTED: uncharacterized protein At4g06598 [Vitis vinifera]	[more]
gi\|802591888\|ref\|XP_012071280.1\|	2.0e-19	71.83	PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0015693	magnesium ion transport
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0015095	magnesium ion transmembrane transporter activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004307	Cla004307.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004307	Cla97C05G091800	Watermelon (97103) v2	wmwmbB206
Cla004307	Csa3G225830	Cucumber (Chinese Long) v2	cuwmB243
Cla004307	ClCG05G009440	Watermelon (Charleston Gray)	wcgwmB286
Cla004307	CSPI03G19150	Wild cucumber (PI 183967)	cpiwmB242
Cla004307	Cucsa.032880	Cucumber (Gy14) v1	cgywmB002
Cla004307	CmaCh04G005420	Cucurbita maxima (Rimu)	cmawmB703
Cla004307	CmaCh16G003890	Cucurbita maxima (Rimu)	cmawmB317
Cla004307	CmoCh04G005760	Cucurbita moschata (Rifu)	cmowmB699
Cla004307	CmoCh16G004230	Cucurbita moschata (Rifu)	cmowmB311
Cla004307	Lsi05G001570	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla004307	Cp4.1LG14g03990	Cucurbita pepo (Zucchini)	cpewmB228
Cla004307	Cp4.1LG01g01760	Cucurbita pepo (Zucchini)	cpewmB433
Cla004307	CsGy3G019060	Cucumber (Gy14) v2	cgybwmB229
Cla004307	MELO3C019429.2	Melon (DHL92) v3.6.1	medwmB448
Cla004307	Carg13199	Silver-seed gourd	carwmB0048
Cla004307	Carg11320	Silver-seed gourd	carwmB0655
Cla004307	CsaV3_3G019270	Cucumber (Chinese Long) v3	cucwmB252
Cla004307	Bhi01G001186	Wax gourd	wgowmB202

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004307	Melon (DHL92) v3.5.1	mewmB461