Cla004199 (gene) Watermelon (97103) v1

Overview
NameCla004199
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 21076144 .. 21076662 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTTTTCCAGAGCCAATTGAGCTGCTCGCCTTCATCATCCAAGGATTCGACGCGATGGGTTGGAGGCAATTTTGTAAAAGTGCCCAAGTCATTCAACCCACCGTCGTGGAGGCATTCTACGAAGGAACCATCCACAGAAAAGCACACAAAGTCAAAGTTGAAGATGTGGTGAATTCCTTCGAGCCTCGGGAGATTAATGGGTTGTTTGATCTTCCCAACGTTGCGACGATAGATGGTAGCAGAATCATGTTGATGCCAACCGAAGCCGAAATGCATGATTCCCTCAAGACTTTCCCAAAGGGTATTCATACATTGGCACCAACTTGCTTGATCGCCGAGGCTAACCTGTGGCTTTACTTCATCAAGCGTTCGCTTCTCCCCACCACGCATGACGCATCAATATCAAAAGACAGTGCCATGGTCATTTATTGCATCATGCGGGGGATTTGGCTAGATGTGGGATGCATCATTCCCCCACGGATTCAGAGGATGTTCTTCAAGCCAAGGGGTTAG

mRNA sequence

ATGGGATTTTTTCCAGAGCCAATTGAGCTGCTCGCCTTCATCATCCAAGGATTCGACGCGATGGGTTGGAGGCAATTTTGTAAAAGTGCCCAAGTCATTCAACCCACCGTCGTGGAGGCATTCTACGAAGGAACCATCCACAGAAAAGCACACAAAGTCAAAGTTGAAGATGTGGTGAATTCCTTCGAGCCTCGGGAGATTAATGGGTTGTTTGATCTTCCCAACGTTGCGACGATAGATGGTAGCAGAATCATGTTGATGCCAACCGAAGCCGAAATGCATGATTCCCTCAAGACTTTCCCAAAGGGTATTCATACATTGGCACCAACTTGCTTGATCGCCGAGGCTAACCTGTGGCTTTACTTCATCAAGCGTTCGCTTCTCCCCACCACGCATGACGCATCAATATCAAAAGACAGTGCCATGGTCATTTATTGCATCATGCGGGGGATTTGGCTAGATGTGGGATGCATCATTCCCCCACGGATTCAGAGGATGTTCTTCAAGCCAAGGGGTTAG

Coding sequence (CDS)

ATGGGATTTTTTCCAGAGCCAATTGAGCTGCTCGCCTTCATCATCCAAGGATTCGACGCGATGGGTTGGAGGCAATTTTGTAAAAGTGCCCAAGTCATTCAACCCACCGTCGTGGAGGCATTCTACGAAGGAACCATCCACAGAAAAGCACACAAAGTCAAAGTTGAAGATGTGGTGAATTCCTTCGAGCCTCGGGAGATTAATGGGTTGTTTGATCTTCCCAACGTTGCGACGATAGATGGTAGCAGAATCATGTTGATGCCAACCGAAGCCGAAATGCATGATTCCCTCAAGACTTTCCCAAAGGGTATTCATACATTGGCACCAACTTGCTTGATCGCCGAGGCTAACCTGTGGCTTTACTTCATCAAGCGTTCGCTTCTCCCCACCACGCATGACGCATCAATATCAAAAGACAGTGCCATGGTCATTTATTGCATCATGCGGGGGATTTGGCTAGATGTGGGATGCATCATTCCCCCACGGATTCAGAGGATGTTCTTCAAGCCAAGGGGTTAG

Protein sequence

MGFFPEPIELLAFIIQGFDAMGWRQFCKSAQVIQPTVVEAFYEGTIHRKAHKVKVEDVVNSFEPREINGLFDLPNVATIDGSRIMLMPTEAEMHDSLKTFPKGIHTLAPTCLIAEANLWLYFIKRSLLPTTHDASISKDSAMVIYCIMRGIWLDVGCIIPPRIQRMFFKPRG
Homology
[Close]
BLAST of Cla004199 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 39/153 (25.49%), Postives = 72/153 (47.06%), Query Frame = 1 

Query: 12  AFIIQGFDAMGWRQFCKSAQVIQPTVVEAFYEGTIHRKAHKVKVEDVVNSFEPREINGLF 71
           AFI +     GWRQFC+        +V  FY   +      V V++V   F  R IN +F
Sbjct: 5   AFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSIF 64

Query: 72  DLPNV--------ATIDGSRIMLMPTEAEMHDSL-KTFPKGIHTLAPTCLIAEANLWLYF 131
            L  V        + +   ++ ++  E  +  +  +  P+G +T     L   A +W +F
Sbjct: 65  GLEEVVDEYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHF 124

Query: 132 IKRSLLPTTHDASISKDSAMVIYCIMRGIWLDV 156
           +    +P+TH  +++KD  +++Y I+ GI +++
Sbjct: 125 LTARFMPSTHGKTVAKDRVLLLYSILTGISVNI 157

[Close]
BLAST of Cla004199 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 39/153 (25.49%), Postives = 72/153 (47.06%), Query Frame = 1 

Query: 12  AFIIQGFDAMGWRQFCKSAQVIQPTVVEAFYEGTIHRKAHKVKVEDVVNSFEPREINGLF 71
           AFI +     GWRQFC+        +V  FY   +      V V++V   F  R IN +F
Sbjct: 5   AFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSIF 64

Query: 72  DLPNV--------ATIDGSRIMLMPTEAEMHDSL-KTFPKGIHTLAPTCLIAEANLWLYF 131
            L  V        + +   ++ ++  E  +  +  +  P+G +T     L   A +W +F
Sbjct: 65  GLEEVVDEYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHF 124

Query: 132 IKRSLLPTTHDASISKDSAMVIYCIMRGIWLDV 156
           +    +P+TH  +++KD  +++Y I+ GI +++
Sbjct: 125 LTARFMPSTHGKTVAKDRVLLLYSILTGISVNI 157

[Close]
BLAST of Cla004199 vs. NCBI nr
Match: gi|848894769|ref|XP_012847421.1| (PREDICTED: uncharacterized protein LOC105967368 [Erythranthe guttata])

HSP 1 Score: 60.5 bits (145), Expect = 3.4e-06
Identity = 41/152 (26.97%), Postives = 62/152 (40.79%), Query Frame = 1 

Query: 18  FDAMGWRQFCKSAQVIQPTVVEAFYEGTIHRKAHKVKVEDVVNSFEPREINGLFDLPNVA 77
           FD   W    +        +V  FY          V + D    ++   IN LF +P V 
Sbjct: 113 FDRRKWEYLARRPDDYNENLVRLFYANAGFHPGSVVVLRDKEVRYDAATINDLFHIPEVP 172

Query: 78  TIDGSRIMLMPTEAEMHDSL----KTFPKGIHTLAPTCLIAEANLWLYFIKRSLLPTTHD 137
           T    ++ L  T  E+  +L      + KG H      L  EA +W+YF+   L+PT   
Sbjct: 173 TEPFQQLKLATTYEELIQTLCPRGSKWEKGEHWFRRGELSREAKVWMYFVSNRLMPTKST 232

Query: 138 ASISKDSAMVIYCIMRGIWLDVGCIIPPRIQR 166
           A        ++Y IM+   ++VG II   I+R
Sbjct: 233 AKTYAPRLTLMYAIMKRTPVNVGAIIHSEIRR 264

The following BLAST results are available for this feature:
BLAST of Cla004199 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QTD9_9ROSA1.6e-0725.49Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1[more]
BLAST of Cla004199 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703087370|ref|XP_010093253.1|2.4e-0725.49hypothetical protein L484_022412 [Morus notabilis][more]
gi|848894769|ref|XP_012847421.1|3.4e-0626.97PREDICTED: uncharacterized protein LOC105967368 [Erythranthe guttata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla004199Cla004199.1mRNA