Cla004010 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004010
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 3680509 .. 3680814 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCACCTTCAGTCCTTCACGGAGCCCAGGGAGTTCTCGGCTCCAACAGTTGGGACCCGTGTCTGGAGTCTCTCGTTTGAGATCTTCATCGCTCAAGAAGCCTCCTGAAACGCTAAGAAGAGCCGTCGCTGATTGCCTTTCTTCCTCCGCAGCTAATTCGCATCATGGAGGTCCCTCTGCTTCCGTCCTTGTTGCCGAAGCTTCCAGGACCCTCCGGGTGAGTAATTCCAAGGGTTTCTCTGTTCATTTCCCTTGGATCTTGCAATTCTGCTCGGCTTACCATATAATCTGCCTTTTCTGA

mRNA sequence

ATGTCTTCCACCTTCAGTCCTTCACGGAGCCCAGGGAGTTCTCGGCTCCAACAGTTGGGACCCGTGTCTGGAGTCTCTCGTTTGAGATCTTCATCGCTCAAGAAGCCTCCTGAAACGCTAAGAAGAGCCGTCGCTGATTGCCTTTCTTCCTCCGCAGCTAATTCGCATCATGGAGGTCCCTCTGCTTCCGTCCTTGTTGCCGAAGCTTCCAGGACCCTCCGGGTGAGTAATTCCAAGGGTTTCTCTGTTCATTTCCCTTGGATCTTGCAATTCTGCTCGGCTTACCATATAATCTGCCTTTTCTGA

Coding sequence (CDS)

ATGTCTTCCACCTTCAGTCCTTCACGGAGCCCAGGGAGTTCTCGGCTCCAACAGTTGGGACCCGTGTCTGGAGTCTCTCGTTTGAGATCTTCATCGCTCAAGAAGCCTCCTGAAACGCTAAGAAGAGCCGTCGCTGATTGCCTTTCTTCCTCCGCAGCTAATTCGCATCATGGAGGTCCCTCTGCTTCCGTCCTTGTTGCCGAAGCTTCCAGGACCCTCCGGGTGAGTAATTCCAAGGGTTTCTCTGTTCATTTCCCTTGGATCTTGCAATTCTGCTCGGCTTACCATATAATCTGCCTTTTCTGA

Protein sequence

MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPETLRRAVADCLSSSAANSHHGGPSASVLVAEASRTLRVSNSKGFSVHFPWILQFCSAYHIICLF

Homology

[Close]

BLAST of Cla004010 vs. TrEMBL
Match: A0A0A0KS77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182070 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-30
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1  MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPETLRRAVADCLSSSAANSHHGGP 60
          MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPE LRRAV DCLSSSAANSHHGGP
Sbjct: 1  MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPEPLRRAVTDCLSSSAANSHHGGP 60

Query: 61 SASVLVAEASRTLR 75
          SASVLVAEASRTLR
Sbjct: 61 SASVLVAEASRTLR 74

[Close]

BLAST of Cla004010 vs. TrEMBL
Match: M5X7S1_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa000390m1g PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-18
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 1  MSSTF-SPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPETLRRAVADCLSSSAANSHHGG 60
          MSS + SP+RSPGSSRLQ  G   GV+RLRSSSLKKPPE LRRAVADCLSSSAA+SHH  
Sbjct: 1  MSSGYNSPARSPGSSRLQLGGGGGGVARLRSSSLKKPPEPLRRAVADCLSSSAASSHHAS 60

Query: 61 PSASVLVAEASRTLR 75
           S++VL++EASR LR
Sbjct: 61 TSSTVLLSEASRILR 75

[Close]

BLAST of Cla004010 vs. TrEMBL
Match: A0A067LJY5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01495 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-18
Identity = 60/80 (75.00%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 1  MSSTFSPSR-SPGSSRLQ--QLGPVSGVSRLRSSSLKKPPETLRRAVADCLSSSA---AN 60
          MSSTFSPSR SPGSSRLQ  QLG V  VSRLRSSS KKPPE LR A+ADCLSS+A   A 
Sbjct: 1  MSSTFSPSRNSPGSSRLQLFQLGAVGSVSRLRSSSFKKPPEPLRHAIADCLSSAAAAGAT 60

Query: 61 SHHGGPSASVLVAEASRTLR 75
          SHHG P  SV V EASRTLR
Sbjct: 61 SHHGNP--SVAVTEASRTLR 78

[Close]

BLAST of Cla004010 vs. TrEMBL
Match: A0A067FNL3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0009532mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 56/79 (70.89%), Postives = 60/79 (75.95%), Query Frame = 1


Query: 1  MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPETLRRAVADCLSSSAANS----- 60
          MSS +SP RSPGS RL   G VSGVSRLRSSS+KKPPE LRRAVADCLSSSAA+S     
Sbjct: 1  MSSIYSPGRSPGSLRLGVGGGVSGVSRLRSSSMKKPPEPLRRAVADCLSSSAASSSPSLL 60

Query: 61 HHGGPSASVLVAEASRTLR 75
          H G PS   +V EASRTLR
Sbjct: 61 HPGSPSG--VVFEASRTLR 77

[Close]

BLAST of Cla004010 vs. TrEMBL
Match: V4TCI7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030542mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 56/79 (70.89%), Postives = 60/79 (75.95%), Query Frame = 1


Query: 1  MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPETLRRAVADCLSSSAANS----- 60
          MSS +SP RSPGS RL   G VSGVSRLRSSS+KKPPE LRRAVADCLSSSAA+S     
Sbjct: 1  MSSIYSPGRSPGSLRLGVGGGVSGVSRLRSSSMKKPPEPLRRAVADCLSSSAASSSPSLL 60

Query: 61 HHGGPSASVLVAEASRTLR 75
          H G PS   +V EASRTLR
Sbjct: 61 HPGSPSG--VVFEASRTLR 77

[Close]

BLAST of Cla004010 vs. NCBI nr
Match: gi|778701019|ref|XP_011654951.1| (PREDICTED: uncharacterized protein LOC101205603 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1  MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPETLRRAVADCLSSSAANSHHGGP 60
          MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPE LRRAV DCLSSSAANSHHGGP
Sbjct: 1  MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPEPLRRAVTDCLSSSAANSHHGGP 60

Query: 61 SASVLVAEASRTLR 75
          SASVLVAEASRTLR
Sbjct: 61 SASVLVAEASRTLR 74

[Close]

BLAST of Cla004010 vs. NCBI nr
Match: gi|659123448|ref|XP_008461669.1| (PREDICTED: uncharacterized protein LOC103500216 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 1


Query: 1  MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPETLRRAVADCLSSSAANSHHGGP 60
          MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPE LRRAV DCLSSSAANSHHGGP
Sbjct: 1  MSSTFSPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPEPLRRAVTDCLSSSAANSHHGGP 60

Query: 61 SASVLVAEASRTLR 75
          SASVLVAEASRTLR
Sbjct: 61 SASVLVAEASRTLR 74

[Close]

BLAST of Cla004010 vs. NCBI nr
Match: gi|645255642|ref|XP_008233591.1| (PREDICTED: uncharacterized protein LOC103332621 [Prunus mume])

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 1  MSSTF-SPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPETLRRAVADCLSSSAANSHHGG 60
          MSS + SP+RSPGSSRLQ  G   GV+RLRSSSLKKPPE LRRAVADCLSSSAA+SHH  
Sbjct: 1  MSSGYNSPARSPGSSRLQLGGGGGGVARLRSSSLKKPPEPLRRAVADCLSSSAASSHHAS 60

Query: 61 PSASVLVAEASRTLR 75
           S++VL++EASR LR
Sbjct: 61 TSSTVLLSEASRILR 75

[Close]

BLAST of Cla004010 vs. NCBI nr
Match: gi|596047811|ref|XP_007220317.1| (hypothetical protein PRUPE_ppa000390m1g, partial [Prunus persica])

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 1  MSSTF-SPSRSPGSSRLQQLGPVSGVSRLRSSSLKKPPETLRRAVADCLSSSAANSHHGG 60
          MSS + SP+RSPGSSRLQ  G   GV+RLRSSSLKKPPE LRRAVADCLSSSAA+SHH  
Sbjct: 1  MSSGYNSPARSPGSSRLQLGGGGGGVARLRSSSLKKPPEPLRRAVADCLSSSAASSHHAS 60

Query: 61 PSASVLVAEASRTLR 75
           S++VL++EASR LR
Sbjct: 61 TSSTVLLSEASRILR 75

[Close]

BLAST of Cla004010 vs. NCBI nr
Match: gi|470143738|ref|XP_004307528.1| (PREDICTED: uncharacterized protein LOC101291377 [Fragaria vesca subsp. vesca])

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-18
Identity = 54/77 (70.13%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 1  MSSTFSPSRSPGSSRLQQ---LGPVSGVSRLRSSSLKKPPETLRRAVADCLSSSAANSHH 60
          MSS +S  RSPGSSRLQ    +G V G SRLRSSS+KKPPE LRRAVADCL+SSAA+SHH
Sbjct: 1  MSSLYSSGRSPGSSRLQVGGGVGGVGGASRLRSSSIKKPPEPLRRAVADCLASSAASSHH 60

Query: 61 GGPSASVLVAEASRTLR 75
             S+SVL++EASR LR
Sbjct: 61 ASTSSSVLLSEASRILR 77

The following BLAST results are available for this feature:

BLAST of Cla004010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS77_CUCSA	1.8e-30	97.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G182070 PE=4 SV=1	[more]
M5X7S1_PRUPE	1.2e-18	73.33	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa000390m1g PE=4 ...	[more]
A0A067LJY5_JATCU	6.0e-18	75.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01495 PE=4 SV=1	[more]
A0A067FNL3_CITSI	1.1e-16	70.89	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0009532mg PE=4 ...	[more]
V4TCI7_9ROSI	1.1e-16	70.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030542mg PE=4 SV=1	[more]

BLAST of Cla004010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701019\|ref\|XP_011654951.1\|	2.6e-30	97.30	PREDICTED: uncharacterized protein LOC101205603 [Cucumis sativus]	[more]
gi\|659123448\|ref\|XP_008461669.1\|	2.6e-30	97.30	PREDICTED: uncharacterized protein LOC103500216 [Cucumis melo]	[more]
gi\|645255642\|ref\|XP_008233591.1\|	1.7e-18	73.33	PREDICTED: uncharacterized protein LOC103332621 [Prunus mume]	[more]
gi\|596047811\|ref\|XP_007220317.1\|	1.7e-18	73.33	hypothetical protein PRUPE_ppa000390m1g, partial [Prunus persica]	[more]
gi\|470143738\|ref\|XP_004307528.1\|	2.3e-18	70.13	PREDICTED: uncharacterized protein LOC101291377 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004010	Cla004010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34958	FAMILY NOT NAMED	coord: 2..74 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004010	Bhi07G000770	Wax gourd	wgowmB543

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004010	Cucurbita pepo (Zucchini)	cpewmB403
Cla004010	Cucurbita pepo (Zucchini)	cpewmB404
Cla004010	Cucurbita pepo (Zucchini)	cpewmB702
Cla004010	Bottle gourd (USVL1VR-Ls)	lsiwmB058
Cla004010	Bottle gourd (USVL1VR-Ls)	lsiwmB307
Cla004010	Cucumber (Gy14) v2	cgybwmB210
Cla004010	Cucumber (Gy14) v2	cgybwmB365
Cla004010	Cucumber (Gy14) v2	cgybwmB457
Cla004010	Melon (DHL92) v3.6.1	medwmB057
Cla004010	Silver-seed gourd	carwmB0087
Cla004010	Silver-seed gourd	carwmB0253
Cla004010	Silver-seed gourd	carwmB0441
Cla004010	Silver-seed gourd	carwmB0663
Cla004010	Cucumber (Chinese Long) v3	cucwmB040
Cla004010	Cucumber (Chinese Long) v3	cucwmB419
Cla004010	Cucumber (Chinese Long) v3	cucwmB230
Cla004010	Cucumber (Chinese Long) v3	cucwmB416
Cla004010	Watermelon (97103) v2	wmwmbB160
Cla004010	Watermelon (97103) v2	wmwmbB149
Cla004010	Watermelon (97103) v2	wmwmbB155
Cla004010	Watermelon (97103) v2	wmwmbB177
Cla004010	Wax gourd	wgowmB043
Cla004010	Wax gourd	wgowmB371
Cla004010	Wax gourd	wgowmB492
Cla004010	Watermelon (97103) v1	wmwmB015
Cla004010	Watermelon (97103) v1	wmwmB044
Cla004010	Watermelon (97103) v1	wmwmB080
Cla004010	Watermelon (97103) v1	wmwmB106
Cla004010	Watermelon (97103) v1	wmwmB108
Cla004010	Cucumber (Gy14) v1	cgywmB063
Cla004010	Cucumber (Gy14) v1	cgywmB306
Cla004010	Cucumber (Gy14) v1	cgywmB337
Cla004010	Cucurbita maxima (Rimu)	cmawmB518
Cla004010	Cucurbita maxima (Rimu)	cmawmB624
Cla004010	Cucurbita maxima (Rimu)	cmawmB678
Cla004010	Cucurbita maxima (Rimu)	cmawmB679
Cla004010	Cucurbita moschata (Rifu)	cmowmB508
Cla004010	Cucurbita moschata (Rifu)	cmowmB615
Cla004010	Cucurbita moschata (Rifu)	cmowmB673
Cla004010	Cucurbita moschata (Rifu)	cmowmB672
Cla004010	Melon (DHL92) v3.5.1	mewmB055
Cla004010	Melon (DHL92) v3.5.1	mewmB366
Cla004010	Melon (DHL92) v3.5.1	mewmB566
Cla004010	Watermelon (Charleston Gray)	wcgwmB025
Cla004010	Watermelon (Charleston Gray)	wcgwmB067
Cla004010	Watermelon (Charleston Gray)	wcgwmB187
Cla004010	Cucumber (Chinese Long) v2	cuwmB224
Cla004010	Watermelon (Charleston Gray)	wcgwmB375
Cla004010	Cucumber (Chinese Long) v2	cuwmB033
Cla004010	Cucumber (Chinese Long) v2	cuwmB391
Cla004010	Cucumber (Chinese Long) v2	cuwmB394
Cla004010	Cucumber (Chinese Long) v2	cuwmB487