Cla003969 (gene) Watermelon (97103) v1

NameCla003969
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr7 : 3029993 .. 3030340 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTGATGTTTTCGCTTGCAATGCCGCTTCCGAACCTAGTGCATTTATACGTTAATGTGAGTAGGGTAGGATTGGACGTAGACTTGAATGCACAATCGTTGAGTCAGTTCAAAGACCCGAATCAATGTATTGATGCTGATCCTGAATCAGTTGCACTAGCCTATGATGATGAAAATATGGTGGCTGGTAATCAATATAGGGAGTTTAAAACAGAAACAGACGATGAATTTGAGGAGTTGGATTTCGATGGTCGTGAACATGAAATACCGTCAAGTACATTCGCTAATCTTGACATGAATGTAATAGATAGCGTTAGAGAACATGACCCAGTTGTAGCCCGGTAG

mRNA sequence

ATGAATCTGATGTTTTCGCTTGCAATGCCGCTTCCGAACCTAGTGCATTTATACGTTAATGTGAGTAGGGTAGGATTGGACGTAGACTTGAATGCACAATCGTTGAGTCAGTTCAAAGACCCGAATCAATGTATTGATGCTGATCCTGAATCAGTTGCACTAGCCTATGATGATGAAAATATGGTGGCTGGTAATCAATATAGGGAGTTTAAAACAGAAACAGACGATGAATTTGAGGAGTTGGATTTCGATGGTCGTGAACATGAAATACCGTCAAGTACATTCGCTAATCTTGACATGAATGTAATAGATAGCGTTAGAGAACATGACCCAGTTGTAGCCCGGTAG

Coding sequence (CDS)

ATGAATCTGATGTTTTCGCTTGCAATGCCGCTTCCGAACCTAGTGCATTTATACGTTAATGTGAGTAGGGTAGGATTGGACGTAGACTTGAATGCACAATCGTTGAGTCAGTTCAAAGACCCGAATCAATGTATTGATGCTGATCCTGAATCAGTTGCACTAGCCTATGATGATGAAAATATGGTGGCTGGTAATCAATATAGGGAGTTTAAAACAGAAACAGACGATGAATTTGAGGAGTTGGATTTCGATGGTCGTGAACATGAAATACCGTCAAGTACATTCGCTAATCTTGACATGAATGTAATAGATAGCGTTAGAGAACATGACCCAGTTGTAGCCCGGTAG

Protein sequence

MNLMFSLAMPLPNLVHLYVNVSRVGLDVDLNAQSLSQFKDPNQCIDADPESVALAYDDENMVAGNQYREFKTETDDEFEELDFDGREHEIPSSTFANLDMNVIDSVREHDPVVAR
BLAST of Cla003969 vs. TrEMBL
Match: E5GCF3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1

Query: 1   MNLMFSLAMPLPNLVHLYVNVSRVGLDVDLNAQSLSQFKDPNQCIDADPESVA-LAYDDE 60
           MN MFS+A+P PN+VHLYV VS +   ++LN +     K   + +D DP+S A     +E
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMIDSAINLNVEP----KYVEEYVDVDPKSDAPPVCHEE 102

Query: 61  NMVAGNQYREFKTETDDE 78
            MVA N+Y EF+TETDD+
Sbjct: 103 EMVATNEYTEFRTETDDD 116

BLAST of Cla003969 vs. NCBI nr
Match: gi|659113207|ref|XP_008456454.1| (PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 8.4e-17
Identity = 45/91 (49.45%), Postives = 65/91 (71.43%), Query Frame = 1

Query: 24  VGLDVDLNAQSLSQFKDPNQCIDADPESVALAY-DDENMVAGNQYREFKTETDDEFEELD 83
           V L ++LN +     +   + +D DPES A     +E MVA N+Y EF+T+TDDEFEE+D
Sbjct: 2   VNLTINLNVEP----RYVEEYVDVDPESDAPPVCHEEEMVATNEYTEFRTKTDDEFEEMD 61

Query: 84  FDGREHEIPSSTFANLDMNVIDSVREHDPVV 114
           FDG E+E+PS+TF NLDM+ +D ++EHDP++
Sbjct: 62  FDGCEYEVPSNTFTNLDMDAVDDIQEHDPII 88

BLAST of Cla003969 vs. NCBI nr
Match: gi|307136331|gb|ADN34152.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-09
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1

Query: 1   MNLMFSLAMPLPNLVHLYVNVSRVGLDVDLNAQSLSQFKDPNQCIDADPESVA-LAYDDE 60
           MN MFS+A+P PN+VHLYV VS +   ++LN +     K   + +D DP+S A     +E
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMIDSAINLNVEP----KYVEEYVDVDPKSDAPPVCHEE 102

Query: 61  NMVAGNQYREFKTETDDE 78
            MVA N+Y EF+TETDD+
Sbjct: 103 EMVATNEYTEFRTETDDD 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GCF3_CUCME1.5e-0947.44Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659113207|ref|XP_008456454.1|8.4e-1749.45PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo][more]
gi|307136331|gb|ADN34152.1|2.2e-0947.44hypothetical protein [Cucumis melo subsp. melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003969Cla003969.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None