Cla003963 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003963
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	class I heat shock protein 3 (AHRD V1 ***- B4F976_MAIZE); contains Interpro domain(s) IPR008978 HSP20-like chaperone
Location	Chr7 : 2977251 .. 2977627 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGAGTGCTTTGTGCTTCAACCATCTCAATCACTCTTAACAACAAAACAAAAGCTTACGGTCTTAATCAATTTACACTCTTTTTCCACCTCACTTCATTTTCAAACCATGTCGCTTATTCCAACCATTTTCGATGTAAGAAGGCAGAGTGTTGCAGATCAGTGGAGAGAGAAGCAAGGAACATGAAGAGAAGAACTACAAATGGCATAGAATTGAACGGAGCAGTGGAAAGTTCATGACGCGATTCAGGCTGCCGGAGAATGCTAAAGCGGAGGAGATGAAGGCCAGCATGGAGAATGGAGTGCTGACTGTGACGGTGCCTAAAATGGAAGAGAAGAAGCCTGAAGTAAAGTCTATTGACATCTCTGGGTAG

mRNA sequence

ATGCTGAGAGTGCTTTGTGCTTCAACCATCTCAATCACTCTTAACAACAAAACAAAAGCTTACGGCAGAGTGTTGCAGATCAGTGGAGAGAGAAGCAAGGAACATGAAGAGAAGAACTACAAATGGCATAGAATTGAACGGAGCAGTGGAAAGTTCATGACGCGATTCAGGCTGCCGGAGAATGCTAAAGCGGAGGAGATGAAGGCCAGCATGGAGAATGGAGTGCTGACTGTGACGGTGCCTAAAATGGAAGAGAAGAAGCCTGAAGTAAAGTCTATTGACATCTCTGGGTAG

Coding sequence (CDS)

ATGCTGAGAGTGCTTTGTGCTTCAACCATCTCAATCACTCTTAACAACAAAACAAAAGCTTACGGCAGAGTGTTGCAGATCAGTGGAGAGAGAAGCAAGGAACATGAAGAGAAGAACTACAAATGGCATAGAATTGAACGGAGCAGTGGAAAGTTCATGACGCGATTCAGGCTGCCGGAGAATGCTAAAGCGGAGGAGATGAAGGCCAGCATGGAGAATGGAGTGCTGACTGTGACGGTGCCTAAAATGGAAGAGAAGAAGCCTGAAGTAAAGTCTATTGACATCTCTGGGTAG

Protein sequence

MLRVLCASTISITLNNKTKAYGRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVPKMEEKKPEVKSIDISG

Homology

[Close]

BLAST of Cla003963 vs. Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-29
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           G +LQISGERS E+EEKN KWHR+ERSSGKF  RFRLPENAK EE+KASMENGVL+VTVP
Sbjct: 82  GNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVP 141

Query: 82  KMEEKKPEVKSIDISG 98
           K+ EKKPEVKSIDISG
Sbjct: 142 KVPEKKPEVKSIDISG 157

[Close]

BLAST of Cla003963 vs. Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.0e-29
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 1


Query: 24  VLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVPKM 83
           VLQISGERSKE+EEKN KWHR+ER+SGKFM RFRLPENAK EE+KA+MENGVLTV VPK 
Sbjct: 86  VLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKA 145

Query: 84  EEKKPEVKSIDISG 98
            EKKP+VKSIDISG
Sbjct: 146 PEKKPQVKSIDISG 159

[Close]

BLAST of Cla003963 vs. Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-28
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           G +LQISGERS E+EEK+  WHR+ERSSGKFM RFRLPENAK EE+KASMENGVL+VTVP
Sbjct: 81  GNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVP 140

Query: 82  KMEEKKPEVKSIDISG 98
           K++E KPEVKS+DISG
Sbjct: 141 KVQESKPEVKSVDISG 156

[Close]

BLAST of Cla003963 vs. Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-28
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           G+VLQISGER+KE EEKN KWHR+ERSSGKF+ RFRLPENAK +E+KA+M NGV+TVTVP
Sbjct: 82  GKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVP 141

Query: 82  KMEEKKPEVKSIDISG 98
           K+E KKPEVK+IDISG
Sbjct: 142 KVEIKKPEVKAIDISG 157

[Close]

BLAST of Cla003963 vs. Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-27
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           G+VLQISGER+KE EEKN KWHR+E SSGKF+ RFRLPENA  +E+KA MENGVLTVTVP
Sbjct: 84  GKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVP 143

Query: 82  KMEEKKPEVKSIDISG 98
           K+E KKPEVKSI ISG
Sbjct: 144 KVEMKKPEVKSIHISG 159

[Close]

BLAST of Cla003963 vs. TrEMBL
Match: H6TB42_CITLA (HSP18.1A OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.1e-32
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           GRVLQISGERSKEHEEKN KWHRIERSSGKFM RFRLPENAKAEE+KASMENGVLTVTVP
Sbjct: 84  GRVLQISGERSKEHEEKNDKWHRIERSSGKFMRRFRLPENAKAEEVKASMENGVLTVTVP 143

Query: 82  KMEEKKPEVKSIDISG 98
           K+EEKKPEVKSIDISG
Sbjct: 144 KIEEKKPEVKSIDISG 159

[Close]

BLAST of Cla003963 vs. TrEMBL
Match: A0A0A0KLU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197620 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           GRVLQISGERSKE EEKN KWHRIERS GKFM RFRLPENAK EE+KASMENGVLTV VP
Sbjct: 84  GRVLQISGERSKEQEEKNDKWHRIERSCGKFMRRFRLPENAKVEEVKASMENGVLTVMVP 143

Query: 82  KMEEKKPEVKSIDISG 98
           KMEEKKPE+KSIDI+G
Sbjct: 144 KMEEKKPEIKSIDIAG 159

[Close]

BLAST of Cla003963 vs. TrEMBL
Match: A0A0A0KQE2_CUCSA (Chloroplast small heat shock protein class I OS=Cucumis sativus GN=Csa_5G190560 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           GRVLQISGERSKE EEKN KWHRIERSSGKFM RFRLPENAK EE+KA++ENGVLTVTVP
Sbjct: 84  GRVLQISGERSKEQEEKNDKWHRIERSSGKFMRRFRLPENAKVEEVKANVENGVLTVTVP 143

Query: 82  KMEEKKPEVKSIDISG 98
           K+EEKKPE++SIDISG
Sbjct: 144 KVEEKKPEIRSIDISG 159

[Close]

BLAST of Cla003963 vs. TrEMBL
Match: H6TB47_CITLA (HSP18.1B OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-29
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           GRVLQISGERSKE EEKN KWHRIERSSGKFM RFRLPE+AK EE+KASMENGVLTVTVP
Sbjct: 84  GRVLQISGERSKEQEEKNEKWHRIERSSGKFMRRFRLPEDAKVEEVKASMENGVLTVTVP 143

Query: 82  KMEEKKPEVKSIDISG 98
           K+E KKPE+KSIDISG
Sbjct: 144 KVEVKKPEIKSIDISG 159

[Close]

BLAST of Cla003963 vs. TrEMBL
Match: A5YJE5_9ASTR (Class I low-molecular-weight heat-shock protein OS=Ageratina adenophora PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.6e-29
Identity = 65/76 (85.53%), Postives = 72/76 (94.74%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           GRVLQISGERS+E+EEKN KWHR+ERSSGKF+ RFRLPENAK EE+KA+MENGVLTVTVP
Sbjct: 82  GRVLQISGERSRENEEKNEKWHRVERSSGKFVRRFRLPENAKLEEVKAAMENGVLTVTVP 141

Query: 82  KMEEKKPEVKSIDISG 98
           K EEKKP+VKSIDISG
Sbjct: 142 KAEEKKPDVKSIDISG 157

[Close]

BLAST of Cla003963 vs. NCBI nr
Match: gi|315932718|gb|ADU55789.1| (HSP18.1A [Citrullus lanatus])

HSP 1 Score: 145.2 bits (365), Expect = 5.9e-32
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           GRVLQISGERSKEHEEKN KWHRIERSSGKFM RFRLPENAKAEE+KASMENGVLTVTVP
Sbjct: 84  GRVLQISGERSKEHEEKNDKWHRIERSSGKFMRRFRLPENAKAEEVKASMENGVLTVTVP 143

Query: 82  KMEEKKPEVKSIDISG 98
           K+EEKKPEVKSIDISG
Sbjct: 144 KIEEKKPEVKSIDISG 159

[Close]

BLAST of Cla003963 vs. NCBI nr
Match: gi|659126469|ref|XP_008463198.1| (PREDICTED: 18.1 kDa class I heat shock protein-like [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 3.3e-30
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           GRVLQISGERSKE EEKN KWHRIERSSGKFM RFRLPENAK EE+KA+MENGVLTVTVP
Sbjct: 84  GRVLQISGERSKEQEEKNDKWHRIERSSGKFMRRFRLPENAKVEEVKANMENGVLTVTVP 143

Query: 82  KMEEKKPEVKSIDISG 98
           KMEEKKPE+KSIDI+G
Sbjct: 144 KMEEKKPEIKSIDIAG 159

[Close]

BLAST of Cla003963 vs. NCBI nr
Match: gi|659129350|ref|XP_008464642.1| (PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-29
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           GRVLQISGERSKE EEKN KWHRIERSSGKFM RFRLPENAK +E+KASMENGVL VTVP
Sbjct: 84  GRVLQISGERSKEQEEKNDKWHRIERSSGKFMRRFRLPENAKVDEVKASMENGVLMVTVP 143

Query: 82  KMEEKKPEVKSIDISG 98
           KMEEKKPE+KSI+ISG
Sbjct: 144 KMEEKKPEIKSIEISG 159

[Close]

BLAST of Cla003963 vs. NCBI nr
Match: gi|778701197|ref|XP_004150235.2| (PREDICTED: 18.1 kDa class I heat shock protein-like [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           GRVLQISGERSKE EEKN KWHRIERS GKFM RFRLPENAK EE+KASMENGVLTV VP
Sbjct: 84  GRVLQISGERSKEQEEKNDKWHRIERSCGKFMRRFRLPENAKVEEVKASMENGVLTVMVP 143

Query: 82  KMEEKKPEVKSIDISG 98
           KMEEKKPE+KSIDI+G
Sbjct: 144 KMEEKKPEIKSIDIAG 159

[Close]

BLAST of Cla003963 vs. NCBI nr
Match: gi|659131157|ref|XP_008465538.1| (PREDICTED: 17.6 kDa class I heat shock protein 3-like [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 22  GRVLQISGERSKEHEEKNYKWHRIERSSGKFMTRFRLPENAKAEEMKASMENGVLTVTVP 81
           GRVLQISGERSKE EEKN KWHR+ERSSGKF  RFRLPENAK EE+KA+MENGVLTVTVP
Sbjct: 84  GRVLQISGERSKEQEEKNDKWHRVERSSGKFTRRFRLPENAKVEEVKANMENGVLTVTVP 143

Query: 82  KMEEKKPEVKSIDISG 98
           K+EEKKPE+KSIDISG
Sbjct: 144 KVEEKKPEIKSIDISG 159

The following BLAST results are available for this feature:

BLAST of Cla003963 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HS17C_ARATH	1.6e-29	82.89	17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 S...	[more]
HS181_ARATH	8.0e-29	83.78	18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=1 SV=1	[more]
HSP17_ARATH	1.0e-28	78.95	17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=...	[more]
HSP11_DAUCA	1.8e-28	78.95	17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1	[more]
HSP12_DAUCA	1.2e-27	78.95	18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1	[more]

BLAST of Cla003963 vs. TrEMBL


Match Name	E-value	Identity	Description
H6TB42_CITLA	4.1e-32	94.74	HSP18.1A OS=Citrullus lanatus PE=2 SV=1	[more]
A0A0A0KLU0_CUCSA	1.9e-29	88.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197620 PE=3 SV=1	[more]
A0A0A0KQE2_CUCSA	1.9e-29	86.84	Chloroplast small heat shock protein class I OS=Cucumis sativus GN=Csa_5G190560 ...	[more]
H6TB47_CITLA	2.5e-29	88.16	HSP18.1B OS=Citrullus lanatus PE=2 SV=1	[more]
A5YJE5_9ASTR	5.6e-29	85.53	Class I low-molecular-weight heat-shock protein OS=Ageratina adenophora PE=2 SV=...	[more]

BLAST of Cla003963 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|315932718\|gb\|ADU55789.1\|	5.9e-32	94.74	HSP18.1A [Citrullus lanatus]	[more]
gi\|659126469\|ref\|XP_008463198.1\|	3.3e-30	89.47	PREDICTED: 18.1 kDa class I heat shock protein-like [Cucumis melo]	[more]
gi\|659129350\|ref\|XP_008464642.1\|	2.1e-29	88.16	PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis melo]	[more]
gi\|778701197\|ref\|XP_004150235.2\|	2.8e-29	88.16	PREDICTED: 18.1 kDa class I heat shock protein-like [Cucumis sativus]	[more]
gi\|659131157\|ref\|XP_008465538.1\|	2.8e-29	86.84	PREDICTED: 17.6 kDa class I heat shock protein 3-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002068	A-crystallin/Hsp20_dom
IPR008978	HSP20-like_chaperone

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003963	Cla003963.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 20..96 score: 6.7
IPR002068	Alpha crystallin/Hsp20 domain	PROFILE	PS01031	HSP20	coord: 1..82 score: 16
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 22..96 score: 3.1
IPR008978	HSP20-like chaperone	unknown	SSF49764	HSP20-like chaperones	coord: 22..97 score: 9.07
None	No IPR available	PANTHER	PTHR11527:SF152	SUBFAMILY NOT NAMED	coord: 22..97 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003963	Cla97C07G132190	Watermelon (97103) v2	wmwmbB177
Cla003963	CSPI05G10200	Wild cucumber (PI 183967)	cpiwmB399
Cla003963	Cucsa.164690	Cucumber (Gy14) v1	cgywmB306
Cla003963	CmaCh04G011440	Cucurbita maxima (Rimu)	cmawmB678
Cla003963	CmoCh04G012110	Cucurbita moschata (Rifu)	cmowmB672
Cla003963	Lsi04G009350	Bottle gourd (USVL1VR-Ls)	lsiwmB307
Cla003963	Cp4.1LG01g11230	Cucurbita pepo (Zucchini)	cpewmB404
Cla003963	CsGy5G007540	Cucumber (Gy14) v2	cgybwmB365
Cla003963	MELO3C026571.2	Melon (DHL92) v3.6.1	medwmB057
Cla003963	MELO3C003195.2	Melon (DHL92) v3.6.1	medwmB555

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003963	Cucumber (Chinese Long) v2	cuwmB485