Cla003895 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003895
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	mRNA clone RTFL01-42-F20 (AHRD V1 **-- E4MY19_THEHA)
Location	Chr1 : 6008271 .. 6008582 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGGTACAAACCGATATTCGCTGTGCTTATCATATCGCCTCCTCCACCTTCCGCTCCCTCTCCCCTAATCTCATGCTCCGTCCAACCGCCGCCGTTTCAGGTAAACTTCTCTTCCCCTCCTTCAAGTTGAGAGCATTCTCCACCGGTGCTGCTGTCAGAGTTCCTGAGAAGCCGTCGATTTGTACGGCCGACGAGCTTCATTATGTCTCTGTACCGAATTCTGACTGGAGGCTTGCACTCTGGCGCTACCATCCCTCCCCTCAGGCAATTTCTAATTCCTTCCGTACTCTTCGAGATTCGAGATGA

mRNA sequence

ATGGCGACGGTACAAACCGATATTCGCTGTGCTTATCATATCGCCTCCTCCACCTTCCGCTCCCTCTCCCCTAATCTCATGCTCCGTCCAACCGCCGCCGTTTCAGGTAAACTTCTCTTCCCCTCCTTCAAGTTGAGAGCATTCTCCACCGGTGCTGCTGTCAGAGTTCCTGAGAAGCCGTCGATTTGTACGGCCGACGAGCTTCATTATGTCTCTGTACCGAATTCTGACTGGAGGCTTGCACTCTGGCGCTACCATCCCTCCCCTCAGGCAATTTCTAATTCCTTCCGTACTCTTCGAGATTCGAGATGA

Coding sequence (CDS)

ATGGCGACGGTACAAACCGATATTCGCTGTGCTTATCATATCGCCTCCTCCACCTTCCGCTCCCTCTCCCCTAATCTCATGCTCCGTCCAACCGCCGCCGTTTCAGGTAAACTTCTCTTCCCCTCCTTCAAGTTGAGAGCATTCTCCACCGGTGCTGCTGTCAGAGTTCCTGAGAAGCCGTCGATTTGTACGGCCGACGAGCTTCATTATGTCTCTGTACCGAATTCTGACTGGAGGCTTGCACTCTGGCGCTACCATCCCTCCCCTCAGGCAATTTCTAATTCCTTCCGTACTCTTCGAGATTCGAGATGA

Protein sequence

MATVQTDIRCAYHIASSTFRSLSPNLMLRPTAAVSGKLLFPSFKLRAFSTGAAVRVPEKPSICTADELHYVSVPNSDWRLALWRYHPSPQAISNSFRTLRDSR

Homology

[Close]

BLAST of Cla003895 vs. TrEMBL
Match: A0A0A0KPN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576750 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.8e-39
Identity = 81/91 (89.01%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1  MATVQTDIRCAYHIASSTFRSLSPNLMLRPTAAVSGKLLFPSFKLRAFSTGAAVRVPEKP 60
          MATVQ+DIR A+HIASSTF S++PNLMLR TA++SGKLLFPSFKLRAFSTGAAVRVP+KP
Sbjct: 1  MATVQSDIRGAFHIASSTFLSITPNLMLRRTASLSGKLLFPSFKLRAFSTGAAVRVPDKP 60

Query: 61 SICTADELHYVSVPNSDWRLALWRYHPSPQA 92
          SICTADELHYVSVPNSDWRLALWRYHPSPQA
Sbjct: 61 SICTADELHYVSVPNSDWRLALWRYHPSPQA 91

[Close]

BLAST of Cla003895 vs. TrEMBL
Match: W9RG52_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017326 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.2e-25
Identity = 61/93 (65.59%), Postives = 75/93 (80.65%), Query Frame = 1


Query: 1  MATVQTDIRCAYHIASST--FRSLSPNLMLRPTAAVSGKLLFPSFKLRAFSTGAAVRVPE 60
          M T+Q+D+RC + +ASS+   RSLS N M    AAV  ++L PSF+LRAFST A V++PE
Sbjct: 1  MPTIQSDVRCVFLLASSSSAIRSLSTNSMFSRAAAVR-RVLSPSFRLRAFSTDA-VKIPE 60

Query: 61 KPSICTADELHYVSVPNSDWRLALWRYHPSPQA 92
          KPS+CTADELHYVSVPNSDW+LALWRYHP P+A
Sbjct: 61 KPSVCTADELHYVSVPNSDWKLALWRYHPPPKA 91

[Close]

BLAST of Cla003895 vs. TrEMBL
Match: B9SJW6_RICCO (Catalytic, putative OS=Ricinus communis GN=RCOM_0576870 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21
Identity = 56/98 (57.14%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 2   ATVQTDIRCAYHIASSTFRSLS--------PNLMLRPTAAVSGKLLFPSFKLRAFSTGAA 61
           A +Q+DIR A HIA+S F   S        P L+L  +++         F+LRAFST + 
Sbjct: 11  AAIQSDIRSALHIANSIFARASSSFPCLRSPRLLLSSSSSRRTTSSLSCFRLRAFSTDST 70

Query: 62  VRVPEKPSICTADELHYVSVPNSDWRLALWRYHPSPQA 92
           V++PEKP ICTADELHYVSVPNSDWRLALWRYHPS QA
Sbjct: 71  VKLPEKPPICTADELHYVSVPNSDWRLALWRYHPSSQA 108

[Close]

BLAST of Cla003895 vs. TrEMBL
Match: B9HWD0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12970g PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-18
Identity = 56/107 (52.34%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 3   TVQTDIRCAYHIASSTFRSLSPNLMLRPTAAVSGKLLFP---------------SFKLRA 62
           T+Q+DIR A H+A+  F  ++PNL+L    A S +  F                SF+ R 
Sbjct: 4   TIQSDIRSALHVANLIF--INPNLILSRATASSARWSFSPRPLLSSYRRISTPTSFRART 63

Query: 63  FS---TGAAVRVPEKPSICTADELHYVSVPNSDWRLALWRYHPSPQA 92
           FS   T   V+VPEKP ICTADELHYVSV NSDWR ALWRYHPSPQA
Sbjct: 64  FSSESTEPVVKVPEKPPICTADELHYVSVSNSDWRPALWRYHPSPQA 108

[Close]

BLAST of Cla003895 vs. TrEMBL
Match: A0A0B0P4N0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_27768 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.0e-18
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 1


Query: 4  VQTDIRCAYHIASSTFRSLSPNLMLRPTAAVSGKLLFPSFKL----RAFSTGAAVRVPEK 63
          +Q+DIR A H+A S+  SLSP    R T  +  + L P+  L    R FST A+  +P+K
Sbjct: 10 MQSDIRTALHVAFSSIGSLSP--FRRSTLTLPPRCLRPAASLGLLSRPFSTSAS--LPDK 69

Query: 64 PSICTADELHYVSVPNSDWRLALWRYHPSPQA 92
          PSICTADELHYVS+PNS WRLALWRYHP PQA
Sbjct: 70 PSICTADELHYVSLPNSHWRLALWRYHPPPQA 97

[Close]

BLAST of Cla003895 vs. NCBI nr
Match: gi|659072950|ref|XP_008467182.1| (PREDICTED: uncharacterized protein LOC103504592 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-39
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1  MATVQTDIRCAYHIASSTFRSLSPNLMLRPTAAVSGKLLFPSFKLRAFSTGAAVRVPEKP 60
          MATVQ+DIR A+HIASSTF SL+PNLMLR TA++SGKLLFPSFKLRAFSTGAAVRVPEKP
Sbjct: 1  MATVQSDIRGAFHIASSTFLSLTPNLMLRRTASLSGKLLFPSFKLRAFSTGAAVRVPEKP 60

Query: 61 SICTADELHYVSVPNSDWRLALWRYHPSPQA 92
          SICTADELHYVSVPNSDWRLALWRYHPSPQA
Sbjct: 61 SICTADELHYVSVPNSDWRLALWRYHPSPQA 91

[Close]

BLAST of Cla003895 vs. NCBI nr
Match: gi|449458767|ref|XP_004147118.1| (PREDICTED: uncharacterized protein LOC101217845 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 4.1e-39
Identity = 81/91 (89.01%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1  MATVQTDIRCAYHIASSTFRSLSPNLMLRPTAAVSGKLLFPSFKLRAFSTGAAVRVPEKP 60
          MATVQ+DIR A+HIASSTF S++PNLMLR TA++SGKLLFPSFKLRAFSTGAAVRVP+KP
Sbjct: 1  MATVQSDIRGAFHIASSTFLSITPNLMLRRTASLSGKLLFPSFKLRAFSTGAAVRVPDKP 60

Query: 61 SICTADELHYVSVPNSDWRLALWRYHPSPQA 92
          SICTADELHYVSVPNSDWRLALWRYHPSPQA
Sbjct: 61 SICTADELHYVSVPNSDWRLALWRYHPSPQA 91

[Close]

BLAST of Cla003895 vs. NCBI nr
Match: gi|703118830|ref|XP_010101696.1| (hypothetical protein L484_017326 [Morus notabilis])

HSP 1 Score: 121.7 bits (304), Expect = 7.5e-25
Identity = 61/93 (65.59%), Postives = 75/93 (80.65%), Query Frame = 1


Query: 1  MATVQTDIRCAYHIASST--FRSLSPNLMLRPTAAVSGKLLFPSFKLRAFSTGAAVRVPE 60
          M T+Q+D+RC + +ASS+   RSLS N M    AAV  ++L PSF+LRAFST A V++PE
Sbjct: 1  MPTIQSDVRCVFLLASSSSAIRSLSTNSMFSRAAAVR-RVLSPSFRLRAFSTDA-VKIPE 60

Query: 61 KPSICTADELHYVSVPNSDWRLALWRYHPSPQA 92
          KPS+CTADELHYVSVPNSDW+LALWRYHP P+A
Sbjct: 61 KPSVCTADELHYVSVPNSDWKLALWRYHPPPKA 91

[Close]

BLAST of Cla003895 vs. NCBI nr
Match: gi|694311340|ref|XP_009357255.1| (PREDICTED: uncharacterized protein LOC103947980 isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 63/112 (56.25%), Postives = 74/112 (66.07%), Query Frame = 1


Query: 1   MATVQTDIRCA----YHIASST-------FRSLSPNLM------LRPTAAVSGKLLFPSF 60
           MA +Q DIRCA    +H +SST        RSL P L+       R   ++S      SF
Sbjct: 1   MAAIQYDIRCALLLNHHASSSTSPPSLSTIRSLCPTLLGSRASAARRVLSLSTSCWTTSF 60

Query: 61  KLRAFSTGA----AVRVPEKPSICTADELHYVSVPNSDWRLALWRYHPSPQA 92
           +LRAFSTGA    AV++PEKPSICTADELHYVSVPNSDW+LALWRYHP P+A
Sbjct: 61  RLRAFSTGAGEAAAVKLPEKPSICTADELHYVSVPNSDWKLALWRYHPCPKA 112

[Close]

BLAST of Cla003895 vs. NCBI nr
Match: gi|694311338|ref|XP_009357248.1| (PREDICTED: uncharacterized protein LOC103947980 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 63/112 (56.25%), Postives = 74/112 (66.07%), Query Frame = 1


Query: 1   MATVQTDIRCA----YHIASST-------FRSLSPNLM------LRPTAAVSGKLLFPSF 60
           MA +Q DIRCA    +H +SST        RSL P L+       R   ++S      SF
Sbjct: 1   MAAIQYDIRCALLLNHHASSSTSPPSLSTIRSLCPTLLGSRASAARRVLSLSTSCWTTSF 60

Query: 61  KLRAFSTGA----AVRVPEKPSICTADELHYVSVPNSDWRLALWRYHPSPQA 92
           +LRAFSTGA    AV++PEKPSICTADELHYVSVPNSDW+LALWRYHP P+A
Sbjct: 61  RLRAFSTGAGEAAAVKLPEKPSICTADELHYVSVPNSDWKLALWRYHPCPKA 112

The following BLAST results are available for this feature:

BLAST of Cla003895 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPN7_CUCSA	2.8e-39	89.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576750 PE=4 SV=1	[more]
W9RG52_9ROSA	5.2e-25	65.59	Uncharacterized protein OS=Morus notabilis GN=L484_017326 PE=4 SV=1	[more]
B9SJW6_RICCO	1.6e-21	57.14	Catalytic, putative OS=Ricinus communis GN=RCOM_0576870 PE=4 SV=1	[more]
B9HWD0_POPTR	2.1e-18	52.34	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12970g PE=4 SV=1	[more]
A0A0B0P4N0_GOSAR	8.0e-18	57.61	Uncharacterized protein OS=Gossypium arboreum GN=F383_27768 PE=4 SV=1	[more]

BLAST of Cla003895 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072950\|ref\|XP_008467182.1\|	1.1e-39	91.21	PREDICTED: uncharacterized protein LOC103504592 [Cucumis melo]	[more]
gi\|449458767\|ref\|XP_004147118.1\|	4.1e-39	89.01	PREDICTED: uncharacterized protein LOC101217845 [Cucumis sativus]	[more]
gi\|703118830\|ref\|XP_010101696.1\|	7.5e-25	65.59	hypothetical protein L484_017326 [Morus notabilis]	[more]
gi\|694311340\|ref\|XP_009357255.1\|	1.7e-21	56.25	PREDICTED: uncharacterized protein LOC103947980 isoform X2 [Pyrus x bretschneide...	[more]
gi\|694311338\|ref\|XP_009357248.1\|	1.7e-21	56.25	PREDICTED: uncharacterized protein LOC103947980 isoform X1 [Pyrus x bretschneide...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003895	Cla003895.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11005	LYSOSOMAL ACID LIPASE-RELATED	coord: 4..91 score: 9.0
None	No IPR available	PANTHER	PTHR11005:SF2	SUBFAMILY NOT NAMED	coord: 4..91 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003895	Lsi09G006270	Bottle gourd (USVL1VR-Ls)	lsiwmB028

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003895	Cucurbita maxima (Rimu)	cmawmB273
Cla003895	Cucurbita maxima (Rimu)	cmawmB391
Cla003895	Cucurbita maxima (Rimu)	cmawmB710
Cla003895	Cucurbita maxima (Rimu)	cmawmB716
Cla003895	Cucurbita moschata (Rifu)	cmowmB263
Cla003895	Cucurbita moschata (Rifu)	cmowmB383
Cla003895	Cucurbita moschata (Rifu)	cmowmB712
Cla003895	Cucurbita moschata (Rifu)	cmowmB706
Cla003895	Melon (DHL92) v3.5.1	mewmB030
Cla003895	Melon (DHL92) v3.5.1	mewmB066
Cla003895	Watermelon (Charleston Gray)	wcgwmB143
Cla003895	Watermelon (Charleston Gray)	wcgwmB302
Cla003895	Cucumber (Chinese Long) v2	cuwmB414
Cla003895	Cucumber (Chinese Long) v2	cuwmB416
Cla003895	Cucurbita pepo (Zucchini)	cpewmB037
Cla003895	Cucurbita pepo (Zucchini)	cpewmB188
Cla003895	Bottle gourd (USVL1VR-Ls)	lsiwmB326
Cla003895	Cucumber (Gy14) v2	cgybwmB387
Cla003895	Cucumber (Gy14) v2	cgybwmB389
Cla003895	Melon (DHL92) v3.6.1	medwmB029
Cla003895	Melon (DHL92) v3.6.1	medwmB065
Cla003895	Silver-seed gourd	carwmB0265
Cla003895	Silver-seed gourd	carwmB0793
Cla003895	Silver-seed gourd	carwmB0843
Cla003895	Silver-seed gourd	carwmB1051
Cla003895	Cucumber (Chinese Long) v3	cucwmB439
Cla003895	Cucumber (Chinese Long) v3	cucwmB441
Cla003895	Watermelon (97103) v2	wmwmbB236
Cla003895	Watermelon (97103) v2	wmwmbB271
Cla003895	Wax gourd	wgowmB075
Cla003895	Wax gourd	wgowmB558
Cla003895	Watermelon (97103) v1	wmwmB128
Cla003895	Cucumber (Gy14) v1	cgywmB512
Cla003895	Cucumber (Gy14) v1	cgywmB527