Cla003884 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003884
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	O-fucosyltransferase-like protein (AHRD V1 -- Q8H1E6_ARATH)
Location	Chr8 : 4368790 .. 4369716 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGGCCACAGCCGCTTGAACACTTCGCGTTCCACTGTCTCGCAGTCGCCGCCGGCCTCGCCTCGGCATCGCCAACTAAGGAGTCGGAGTGGCAGTCATAGTGGTAGCGGTAACGGCGGTTTTAGTGTTCGTGACTCGAAGCAGAGCAGCATTATGGAGAAACTGGTTTTCCTTATTTTGTCGGCGGTGTTCAGAAGGAAAGGGCTACTTCTGTTTGCTCCCTTGTTGTATATTTCAATGATGTTATTGTATATGGGCTCCTTGAATTTCGATGTTTCCATTTCCAATCTGAAAACCAGGGTCGTTTCAGTTAACAAACGAGCTCCGCCGGGGTCTGTGTATAGAAGTCCTCAGGTTTTTGAAAAGCTATGGCCTTTCATGGAAGCTGAGAGCCGAAATAGTACCACACATGCGGTATTTTTGTGCCTCCTCTTTTGTTTCTACTCTTTCTCACCTGATTTTGTTGTGGGAATGACAGTTTCTAAATTGACTGAAAATGTACTTTATGGGGATGTTCTATCTTTTTTTCCCTTTCCTCTACTATCTACTATCTCGTGTCATTGCCTTGTTTCTATGATAAGTAATGAAATGAGAAGGGAATTCAGAGATTTAAAGTGGGGGGAGTTTGGGCTATTATTATATGTGTATTACTTCTGTTCTATCTTCCAATGTTAACTTATAAGTATACGATTCTCTGGGTTCAACACATTGTAACACTAGATTTTTACGTTGCCTACATGTTTTGATCTTTGTTCTTCTTGTCAAGTAATAATGGTAAATAATTGTTTACATCTTACTCACCTCACTTAACCTCCATAATCAGATTTGGATGCTGTTTGTCGCCTTCTAACTAATGACTATGCTGCTAATTGTTAGCAGATAGCAACCCCGTCTGTCCTCTGCATTGTGATTTTGGAAGTTTGA

mRNA sequence

ATGCATGGCCACAGCCGCTTGAACACTTCGCGTTCCACTGTCTCGCAGTCGCCGCCGGCCTCGCCTCGGCATCGCCAACTAAGGAGTCGGAGTGGCAGTCATAGTGGTAGCGGTAACGGCGGTTTTAGTGTTCGTGACTCGAAGCAGAGCAGCATTATGGAGAAACTGGTTTTCCTTATTTTGTCGGCGGTGTTCAGAAGGAAAGGGCTACTTCTGTTTGCTCCCTTGTTGTATATTTCAATGATGTTATTGTATATGGGCTCCTTGAATTTCGATGTTTCCATTTCCAATCTGAAAACCAGGGTCGTTTCAGTTAACAAACGAGCTCCGCCGGGGTCTGTGTATAGAAGTCCTCAGGTTTTTGAAAAGCTATGGCCTTTCATGGAAGCTGAGAGCCGAAATAGTACCACACATGCGATAGCAACCCCGTCTGTCCTCTGCATTGTGATTTTGGAAGTTTGA

Coding sequence (CDS)

ATGCATGGCCACAGCCGCTTGAACACTTCGCGTTCCACTGTCTCGCAGTCGCCGCCGGCCTCGCCTCGGCATCGCCAACTAAGGAGTCGGAGTGGCAGTCATAGTGGTAGCGGTAACGGCGGTTTTAGTGTTCGTGACTCGAAGCAGAGCAGCATTATGGAGAAACTGGTTTTCCTTATTTTGTCGGCGGTGTTCAGAAGGAAAGGGCTACTTCTGTTTGCTCCCTTGTTGTATATTTCAATGATGTTATTGTATATGGGCTCCTTGAATTTCGATGTTTCCATTTCCAATCTGAAAACCAGGGTCGTTTCAGTTAACAAACGAGCTCCGCCGGGGTCTGTGTATAGAAGTCCTCAGGTTTTTGAAAAGCTATGGCCTTTCATGGAAGCTGAGAGCCGAAATAGTACCACACATGCGATAGCAACCCCGTCTGTCCTCTGCATTGTGATTTTGGAAGTTTGA

Protein sequence

MHGHSRLNTSRSTVSQSPPASPRHRQLRSRSGSHSGSGNGGFSVRDSKQSSIMEKLVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQVFEKLWPFMEAESRNSTTHAIATPSVLCIVILEV

Homology

[Close]

BLAST of Cla003884 vs. TrEMBL
Match: A0A0A0KW86_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G651650 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 5.3e-66
Identity = 130/142 (91.55%), Postives = 139/142 (97.89%), Query Frame = 1


Query: 1   MHGHSRLNTSRSTVSQSPPASPRHRQLRSRSGSHSGSGNGGFSVRDSKQSSIMEKLVFLI 60
           MHG+SRLNTSRS+VS SPPASPRHRQLRSR+GS SG+ +GGFSVRDSKQSSIMEKLVFLI
Sbjct: 1   MHGYSRLNTSRSSVSLSPPASPRHRQLRSRTGSDSGNSSGGFSVRDSKQSSIMEKLVFLI 60

Query: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQV 120
           LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSV+KRAPPG+VYRSPQV
Sbjct: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVSKRAPPGTVYRSPQV 120

Query: 121 FEKLWPFMEAESRNSTTHAIAT 143
           FEKLWPFMEAESRNSTTHA++T
Sbjct: 121 FEKLWPFMEAESRNSTTHALST 142

[Close]

BLAST of Cla003884 vs. TrEMBL
Match: A0A067KRC7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11197 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-35
Identity = 87/150 (58.00%), Postives = 109/150 (72.67%), Query Frame = 1


Query: 1   MHGHSRLNTSRS---TVSQSPPASPRHRQLRSRSGSHSGS-----GNGGFSVRDSKQSSI 60
           MHG+SRL   RS   T + SPP+SPR R  R ++G   G      G GG   R SKQ+ +
Sbjct: 1   MHGYSRLGNGRSVTATTTPSPPSSPRLRHGRGKTGGTGGGFGGVGGVGGGGSRSSKQN-L 60

Query: 61  MEKLVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPG 120
           +E+L+F+++S VFRR+G+LLFAPL+YIS MLLYMGSLNFDV + NLK+  V V KR PPG
Sbjct: 61  VERLIFILVSVVFRRRGVLLFAPLMYISGMLLYMGSLNFDVDL-NLKSGGVVVRKRPPPG 120

Query: 121 SVYRSPQVFEKLWPFMEAESRNSTTHAIAT 143
           SVYRSPQVFEKLWP+ME ES N + +A+ T
Sbjct: 121 SVYRSPQVFEKLWPYMETES-NGSNNALMT 147

[Close]

BLAST of Cla003884 vs. TrEMBL
Match: A0A0L9UJ32_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g050900 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34
Identity = 84/135 (62.22%), Postives = 104/135 (77.04%), Query Frame = 1


Query: 1   MHGHSRLNTSRSTVSQSPPASPRHRQLRSRSGSHSGSGNGGFSVRDSKQSSIMEKLVFLI 60
           MHG+SRL  +    ++SPP+SPR R  RS++GS + S          K+S+ MEKLVF++
Sbjct: 1   MHGYSRLGGA----ARSPPSSPRFRHGRSKNGSWNSS----------KESNSMEKLVFIL 60

Query: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQV 120
           +SAVFRR+GLLLFAPLLYIS MLLYMGS +FDV   ++K  VV V+KRAPPGSVYRSPQV
Sbjct: 61  MSAVFRRRGLLLFAPLLYISGMLLYMGSFSFDV--VSIKNGVVLVHKRAPPGSVYRSPQV 119

Query: 121 FEKLWPFMEAESRNS 136
           FEKLWPFMEAE+ N+
Sbjct: 121 FEKLWPFMEAEAANA 119

[Close]

BLAST of Cla003884 vs. TrEMBL
Match: A0A0S3SJK6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G186600 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34
Identity = 84/135 (62.22%), Postives = 104/135 (77.04%), Query Frame = 1


Query: 1   MHGHSRLNTSRSTVSQSPPASPRHRQLRSRSGSHSGSGNGGFSVRDSKQSSIMEKLVFLI 60
           MHG+SRL  +    ++SPP+SPR R  RS++GS + S          K+S+ MEKLVF++
Sbjct: 1   MHGYSRLGGA----ARSPPSSPRFRHGRSKNGSWNSS----------KESNSMEKLVFIL 60

Query: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQV 120
           +SAVFRR+GLLLFAPLLYIS MLLYMGS +FDV   ++K  VV V+KRAPPGSVYRSPQV
Sbjct: 61  MSAVFRRRGLLLFAPLLYISGMLLYMGSFSFDV--VSIKNGVVLVHKRAPPGSVYRSPQV 119

Query: 121 FEKLWPFMEAESRNS 136
           FEKLWPFMEAE+ N+
Sbjct: 121 FEKLWPFMEAEAANA 119

[Close]

BLAST of Cla003884 vs. TrEMBL
Match: B9T5R6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1147840 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 86/141 (60.99%), Postives = 104/141 (73.76%), Query Frame = 1


Query: 1   MHGHSRLNTSRS---TVSQSPPASPRHRQLRSRSGSHSGS---GNGGFSVRDSKQSSIME 60
           MHG SRL   RS   T + SPP+SPR R  RS++  + GS   G GG S R SKQ+ ++E
Sbjct: 1   MHGCSRLGNGRSVTATTTPSPPSSPRLRHGRSKNSFNGGSLGGGGGGGSSRVSKQN-VVE 60

Query: 61  KLVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSV 120
           KL+F+++S V +R+G+LLFAPLLYIS MLLYMGSLNFDV + NLK   V V KR P GSV
Sbjct: 61  KLMFVLVSVVLKRRGVLLFAPLLYISGMLLYMGSLNFDVDL-NLKNGGVVVRKRPPVGSV 120

Query: 121 YRSPQVFEKLWPFMEAESRNS 136
           YRSPQVF+KLWP+MEAES  S
Sbjct: 121 YRSPQVFKKLWPYMEAESNGS 139

[Close]

BLAST of Cla003884 vs. NCBI nr
Match: gi|449447613|ref|XP_004141562.1| (PREDICTED: uncharacterized protein At1g04910 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 7.6e-66
Identity = 130/142 (91.55%), Postives = 139/142 (97.89%), Query Frame = 1


Query: 1   MHGHSRLNTSRSTVSQSPPASPRHRQLRSRSGSHSGSGNGGFSVRDSKQSSIMEKLVFLI 60
           MHG+SRLNTSRS+VS SPPASPRHRQLRSR+GS SG+ +GGFSVRDSKQSSIMEKLVFLI
Sbjct: 1   MHGYSRLNTSRSSVSLSPPASPRHRQLRSRTGSDSGNSSGGFSVRDSKQSSIMEKLVFLI 60

Query: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQV 120
           LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSV+KRAPPG+VYRSPQV
Sbjct: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVSKRAPPGTVYRSPQV 120

Query: 121 FEKLWPFMEAESRNSTTHAIAT 143
           FEKLWPFMEAESRNSTTHA++T
Sbjct: 121 FEKLWPFMEAESRNSTTHALST 142

[Close]

BLAST of Cla003884 vs. NCBI nr
Match: gi|659119453|ref|XP_008459666.1| (PREDICTED: uncharacterized protein At1g04910 [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-56
Identity = 115/122 (94.26%), Postives = 120/122 (98.36%), Query Frame = 1


Query: 21  SPRHRQLRSRSGSHSGSGNGGFSVRDSKQSSIMEKLVFLILSAVFRRKGLLLFAPLLYIS 80
           SPRHRQLRSR+GS SGSG GGFSVRDSKQSSIMEKLVFLILSAVFRRKGLLLFAPLLYIS
Sbjct: 4   SPRHRQLRSRTGSDSGSGTGGFSVRDSKQSSIMEKLVFLILSAVFRRKGLLLFAPLLYIS 63

Query: 81  MMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQVFEKLWPFMEAESRNSTTHAI 140
           MMLLYMGSLNFDVSISNLKTRVVSV+KRAPPGS+YRSPQVFEKLWPFMEAESRNSTTHA+
Sbjct: 64  MMLLYMGSLNFDVSISNLKTRVVSVSKRAPPGSLYRSPQVFEKLWPFMEAESRNSTTHAL 123

Query: 141 AT 143
           +T
Sbjct: 124 ST 125

[Close]

BLAST of Cla003884 vs. NCBI nr
Match: gi|802620980|ref|XP_012075789.1| (PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas])

HSP 1 Score: 156.4 bits (394), Expect = 4.1e-35
Identity = 87/150 (58.00%), Postives = 109/150 (72.67%), Query Frame = 1


Query: 1   MHGHSRLNTSRS---TVSQSPPASPRHRQLRSRSGSHSGS-----GNGGFSVRDSKQSSI 60
           MHG+SRL   RS   T + SPP+SPR R  R ++G   G      G GG   R SKQ+ +
Sbjct: 1   MHGYSRLGNGRSVTATTTPSPPSSPRLRHGRGKTGGTGGGFGGVGGVGGGGSRSSKQN-L 60

Query: 61  MEKLVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPG 120
           +E+L+F+++S VFRR+G+LLFAPL+YIS MLLYMGSLNFDV + NLK+  V V KR PPG
Sbjct: 61  VERLIFILVSVVFRRRGVLLFAPLMYISGMLLYMGSLNFDVDL-NLKSGGVVVRKRPPPG 120

Query: 121 SVYRSPQVFEKLWPFMEAESRNSTTHAIAT 143
           SVYRSPQVFEKLWP+ME ES N + +A+ T
Sbjct: 121 SVYRSPQVFEKLWPYMETES-NGSNNALMT 147

[Close]

BLAST of Cla003884 vs. NCBI nr
Match: gi|965605809|dbj|BAT92985.1| (hypothetical protein VIGAN_07186600 [Vigna angularis var. angularis])

HSP 1 Score: 153.7 bits (387), Expect = 2.6e-34
Identity = 84/135 (62.22%), Postives = 104/135 (77.04%), Query Frame = 1


Query: 1   MHGHSRLNTSRSTVSQSPPASPRHRQLRSRSGSHSGSGNGGFSVRDSKQSSIMEKLVFLI 60
           MHG+SRL  +    ++SPP+SPR R  RS++GS + S          K+S+ MEKLVF++
Sbjct: 1   MHGYSRLGGA----ARSPPSSPRFRHGRSKNGSWNSS----------KESNSMEKLVFIL 60

Query: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQV 120
           +SAVFRR+GLLLFAPLLYIS MLLYMGS +FDV   ++K  VV V+KRAPPGSVYRSPQV
Sbjct: 61  MSAVFRRRGLLLFAPLLYISGMLLYMGSFSFDV--VSIKNGVVLVHKRAPPGSVYRSPQV 119

Query: 121 FEKLWPFMEAESRNS 136
           FEKLWPFMEAE+ N+
Sbjct: 121 FEKLWPFMEAEAANA 119

[Close]

BLAST of Cla003884 vs. NCBI nr
Match: gi|920699680|gb|KOM42905.1| (hypothetical protein LR48_Vigan05g050900 [Vigna angularis])

HSP 1 Score: 153.7 bits (387), Expect = 2.6e-34
Identity = 84/135 (62.22%), Postives = 104/135 (77.04%), Query Frame = 1


Query: 1   MHGHSRLNTSRSTVSQSPPASPRHRQLRSRSGSHSGSGNGGFSVRDSKQSSIMEKLVFLI 60
           MHG+SRL  +    ++SPP+SPR R  RS++GS + S          K+S+ MEKLVF++
Sbjct: 1   MHGYSRLGGA----ARSPPSSPRFRHGRSKNGSWNSS----------KESNSMEKLVFIL 60

Query: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQV 120
           +SAVFRR+GLLLFAPLLYIS MLLYMGS +FDV   ++K  VV V+KRAPPGSVYRSPQV
Sbjct: 61  MSAVFRRRGLLLFAPLLYISGMLLYMGSFSFDV--VSIKNGVVLVHKRAPPGSVYRSPQV 119

Query: 121 FEKLWPFMEAESRNS 136
           FEKLWPFMEAE+ N+
Sbjct: 121 FEKLWPFMEAEAANA 119

The following BLAST results are available for this feature:

BLAST of Cla003884 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW86_CUCSA	5.3e-66	91.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G651650 PE=4 SV=1	[more]
A0A067KRC7_JATCU	2.8e-35	58.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11197 PE=4 SV=1	[more]
A0A0L9UJ32_PHAAN	1.8e-34	62.22	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g050900 PE=4 SV=1	[more]
A0A0S3SJK6_PHAAN	1.8e-34	62.22	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G186600 PE=...	[more]
B9T5R6_RICCO	1.2e-33	60.99	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1147840 PE=4 SV=1	[more]

BLAST of Cla003884 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447613\|ref\|XP_004141562.1\|	7.6e-66	91.55	PREDICTED: uncharacterized protein At1g04910 [Cucumis sativus]	[more]
gi\|659119453\|ref\|XP_008459666.1\|	1.1e-56	94.26	PREDICTED: uncharacterized protein At1g04910 [Cucumis melo]	[more]
gi\|802620980\|ref\|XP_012075789.1\|	4.1e-35	58.00	PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]	[more]
gi\|965605809\|dbj\|BAT92985.1\|	2.6e-34	62.22	hypothetical protein VIGAN_07186600 [Vigna angularis var. angularis]	[more]
gi\|920699680\|gb\|KOM42905.1\|	2.6e-34	62.22	hypothetical protein LR48_Vigan05g050900 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006004	fucose metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003884	Cla003884.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31288	FAMILY NOT NAMED	coord: 17..146 score: 5.0
None	No IPR available	PANTHER	PTHR31288:SF8	O-FUCOSYLTRANSFERASE-LIKE PROTEIN	coord: 17..146 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003884	Cla97C08G144780	Watermelon (97103) v2	wmwmbB104
Cla003884	ClCG08G000340	Watermelon (Charleston Gray)	wcgwmB404
Cla003884	CSPI05G31380	Wild cucumber (PI 183967)	cpiwmB386
Cla003884	Cucsa.061650	Cucumber (Gy14) v1	cgywmB051
Cla003884	CmaCh09G012270	Cucurbita maxima (Rimu)	cmawmB016
Cla003884	CmoCh09G013250	Cucurbita moschata (Rifu)	cmowmB015
Cla003884	Lsi08G000260	Bottle gourd (USVL1VR-Ls)	lsiwmB469
Cla003884	Cp4.1LG06g10140	Cucurbita pepo (Zucchini)	cpewmB762
Cla003884	CsGy5G030680	Cucumber (Gy14) v2	cgybwmB353
Cla003884	MELO3C022214.2	Melon (DHL92) v3.6.1	medwmB008
Cla003884	CsaV3_5G040420	Cucumber (Chinese Long) v3	cucwmB403

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003884	Wax gourd	wgowmB123