Cla003878 (gene) Watermelon (97103) v1

Overview
NameCla003878
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description60S ribosomal protein L36 (AHRD V1 ***- A9PCN6_POPTR); contains Interpro domain(s) IPR000509 Ribosomal protein L36e
LocationChr8 : 4273339 .. 4273668 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCCCTACGGCCCTCCAATCGGAAAGGAAAAACAAGTAAAAGGGTTCTTTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGGTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAGGTTGGAAAGGACATGCGTTCTCTGAAGGTAGCCAAAAGAAAGCTCGGAACTCACAAGAGAGCTAAAAAGAAGCGTGAGGAAAGGTCCAATGTTCTAAGAAAAATGAGGGCCGGTGGAGGTGGTGAGAAGAAGTGA

mRNA sequence

ATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCCCTACGGCCCTCCAATCGGAAAGGAAAAACAAGTAAAAGGGTTCTTTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGGTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAGGTTGGAAAGGACATGCGTTCTCTGAAGGTAGCCAAAAGAAAGCTCGGAACTCACAAGAGAGCTAAAAAGAAGCGTGAGGAAAGGTCCAATGTTCTAAGAAAAATGAGGGCCGGTGGAGGTGGTGAGAAGAAGTGA

Coding sequence (CDS)

ATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGGCTGAACAAGGGCCACATAGTCACCAAGAAGGAGTTGGCCCTACGGCCCTCCAATCGGAAAGGAAAAACAAGTAAAAGGGTTCTTTTTGTCCGGAGTTTGATCCGGGAAGTTGCTGGGTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAGGTTGGAAAGGACATGCGTTCTCTGAAGGTAGCCAAAAGAAAGCTCGGAACTCACAAGAGAGCTAAAAAGAAGCGTGAGGAAAGGTCCAATGTTCTAAGAAAAATGAGGGCCGGTGGAGGTGGTGAGAAGAAGTGA

Protein sequence

MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGEKK
Homology
[Close]
BLAST of Cla003878 vs. Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.1e-41
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELA RP +RKGKTSKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGG--EKK 110
           TELLKVGKD R+LKVAKRKLGTHKRAK+KREE S+VLRKMR+GGGG  EKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKK 111

[Close]
BLAST of Cla003878 vs. Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.7e-40
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 1 

Query: 8   TGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E   RP+NRKGKTSKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGG--EKK 110
           KD R+LKVAKRKLGTHKRAK+KREE S+VLRKMR+GG G  EKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKK 107

[Close]
BLAST of Cla003878 vs. Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-39
Identity = 83/105 (79.05%), Postives = 92/105 (87.62%), Query Frame = 1 

Query: 8   TGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELA RP++RKGKTSKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGG---GEKK 110
           KD R+LKVAKRKLGTHKRAK+KREE S+VLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]
BLAST of Cla003878 vs. Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-33
Identity = 74/96 (77.08%), Postives = 81/96 (84.38%), Query Frame = 1 

Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGKTSKR  FVR+LIREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 61 TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNV 97
          TELLKVGKD R+LKV + K+G  + +K+  EER +V
Sbjct: 61 TELLKVGKDKRALKVRQEKVGHSQESKE--EERGDV 94

[Close]
BLAST of Cla003878 vs. Swiss-Prot
Match: RL36_ULVCO (60S ribosomal protein L36 OS=Ulva compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-28
Identity = 65/96 (67.71%), Postives = 74/96 (77.08%), Query Frame = 1 

Query: 12  VGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDMR 71
           VGLNKGH VTKK    RPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKD R
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 72  SLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGE 108
           +LK+ KRKLGTH R KKKREE + VLRKM+A   GE
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101

[Close]
BLAST of Cla003878 vs. TrEMBL
Match: W9SA20_9ROSA (60S ribosomal protein L36 OS=Morus notabilis GN=L484_006508 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.5e-49
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKKELA RPS+RKGKTSKRV FVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGEKK 110
           TELLKVGKD R+LKVAKRKLGTHKRAKKKREE SNVLRKMRAGGGGEKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKK 109

[Close]
BLAST of Cla003878 vs. TrEMBL
Match: A9PCN6_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0004s05590g PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGKTSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGEKK 110
           TELLKVGKD R+LKVAKRKLGTHKRAKKKREE SNVLRKMRA GG EKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKK 109

[Close]
BLAST of Cla003878 vs. TrEMBL
Match: A0A0A0L6L0_CUCSA (60S ribosomal protein L36 OS=Cucumis sativus GN=Csa_3G182240 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.5e-48
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGEKK 110
           TELLKVGKD R+LKVAKRKLGTHKRAKKKREE S+VLRKMRAGGG EKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKK 109

[Close]
BLAST of Cla003878 vs. TrEMBL
Match: E5GCU5_CUCME (60S ribosomal protein L36 OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.5e-48
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGEKK 110
           TELLKVGKD R+LKVAKRKLGTHKRAKKKREE S+VLRKMRAGGG EKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKK 109

[Close]
BLAST of Cla003878 vs. TrEMBL
Match: B9I1L9_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0011s07390g PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.5e-48
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGKTSKRV FVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVQFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGEKK 110
           TELLKVGKD R+LKVAKRKLGTHKRAK+KREE SNVLRKMRA GGGEKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRAAGGGEKK 109

[Close]
BLAST of Cla003878 vs. NCBI nr
Match: gi|703144718|ref|XP_010108352.1| (60S ribosomal protein L36-2 [Morus notabilis])

HSP 1 Score: 201.4 bits (511), Expect = 7.8e-49
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKKELA RPS+RKGKTSKRV FVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGEKK 110
           TELLKVGKD R+LKVAKRKLGTHKRAKKKREE SNVLRKMRAGGGGEKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKK 109

[Close]
BLAST of Cla003878 vs. NCBI nr
Match: gi|224079093|ref|XP_002305746.1| (60S ribosomal protein L36-3 [Populus trichocarpa])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 102/109 (93.58%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGKTSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGEKK 110
           TELLKVGKD R+LKVAKRKLGTHKRAKKKREE SNVLRKMRA GG EKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKK 109

[Close]
BLAST of Cla003878 vs. NCBI nr
Match: gi|224116904|ref|XP_002317423.1| (hypothetical protein POPTR_0011s07390g [Populus trichocarpa])

HSP 1 Score: 198.7 bits (504), Expect = 5.1e-48
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGKTSKRV FVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVQFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGEKK 110
           TELLKVGKD R+LKVAKRKLGTHKRAK+KREE SNVLRKMRA GGGEKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSNVLRKMRAAGGGEKK 109

[Close]
BLAST of Cla003878 vs. NCBI nr
Match: gi|449446023|ref|XP_004140771.1| (PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 5.1e-48
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGEKK 110
           TELLKVGKD R+LKVAKRKLGTHKRAKKKREE S+VLRKMRAGGG EKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGAEKK 109

[Close]
BLAST of Cla003878 vs. NCBI nr
Match: gi|743928532|ref|XP_011008474.1| (PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica])

HSP 1 Score: 198.0 bits (502), Expect = 8.7e-48
Identity = 101/109 (92.66%), Postives = 103/109 (94.50%), Query Frame = 1 

Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELALRPSNRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELA RPS+RKGK SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDMRSLKVAKRKLGTHKRAKKKREERSNVLRKMRAGGGGEKK 110
           TELLKVGKD R+LKVAKRKLGTHKRAKKKREE SNVLRKMRA GG EKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKK 109

The following BLAST results are available for this feature:
BLAST of Cla003878 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL362_ARATH2.1e-4177.4860S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1[more]
RL363_ARATH6.7e-4079.8160S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1[more]
RL361_ARATH1.5e-3979.0560S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1[more]
RL36_DAUCA2.7e-3377.0860S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2[more]
RL36_ULVCO1.2e-2867.7160S ribosomal protein L36 OS=Ulva compressa GN=RL36 PE=3 SV=1[more]
BLAST of Cla003878 vs. TrEMBL
Match NameE-valueIdentityDescription
W9SA20_9ROSA5.5e-4993.5860S ribosomal protein L36 OS=Morus notabilis GN=L484_006508 PE=3 SV=1[more]
A9PCN6_POPTR1.6e-4893.5860S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0004s05590g PE=2 SV=1[more]
A0A0A0L6L0_CUCSA3.5e-4892.6660S ribosomal protein L36 OS=Cucumis sativus GN=Csa_3G182240 PE=3 SV=1[more]
E5GCU5_CUCME3.5e-4892.6660S ribosomal protein L36 OS=Cucumis melo subsp. melo PE=3 SV=1[more]
B9I1L9_POPTR3.5e-4892.6660S ribosomal protein L36 OS=Populus trichocarpa GN=POPTR_0011s07390g PE=3 SV=1[more]
BLAST of Cla003878 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703144718|ref|XP_010108352.1|7.8e-4993.5860S ribosomal protein L36-2 [Morus notabilis][more]
gi|224079093|ref|XP_002305746.1|2.3e-4893.5860S ribosomal protein L36-3 [Populus trichocarpa][more]
gi|224116904|ref|XP_002317423.1|5.1e-4892.66hypothetical protein POPTR_0011s07390g [Populus trichocarpa][more]
gi|449446023|ref|XP_004140771.1|5.1e-4892.66PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus][more]
gi|743928532|ref|XP_011008474.1|8.7e-4892.66PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000509Ribosomal_L36e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003878Cla003878.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000509Ribosomal protein L36ePANTHERPTHR1011460S RIBOSOMAL PROTEIN L36coord: 1..108
score: 3.5
IPR000509Ribosomal protein L36ePFAMPF01158Ribosomal_L36ecoord: 8..101
score: 9.4
IPR000509Ribosomal protein L36ePROSITEPS01190RIBOSOMAL_L36Ecoord: 55..65
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003878Cla97C08G144750Watermelon (97103) v2wmwmbB104
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003878Cucumber (Gy14) v1cgywmB051
Cla003878Cucurbita maxima (Rimu)cmawmB016
Cla003878Cucurbita moschata (Rifu)cmowmB015
Cla003878Wild cucumber (PI 183967)cpiwmB386
Cla003878Melon (DHL92) v3.5.1mewmB010
Cla003878Watermelon (Charleston Gray)wcgwmB404
Cla003878Cucumber (Chinese Long) v2cuwmB381
Cla003878Cucurbita pepo (Zucchini)cpewmB762
Cla003878Bottle gourd (USVL1VR-Ls)lsiwmB469
Cla003878Cucumber (Gy14) v2cgybwmB353
Cla003878Melon (DHL92) v3.6.1medwmB008
Cla003878Cucumber (Chinese Long) v3cucwmB403
Cla003878Wax gourdwgowmB123