Cla003871 (gene) Watermelon (97103) v1

NameCla003871
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 4131664 .. 4132020 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCGACGGAACAAACGAGGTAGGCAAGCAGATGTCGGAACATCGCACGCTACTGGTGGCTCTAGAGAGGCTTCTGAGGGGAAGTCTAGCAACCCTCAGGTGAATGTGAATATGGAGGATCAGATTTTCAATAGAATAACACAGAGATTGGCAACTAATGTTGAGTTAGTGGGAGATCCCTGGAGGAAGTACGAGATCGAGAGGTTCAAAGCGTTAGGTGCTCAAGTGTTCGAGGGTACCACTAATCCTGCCAATGTTGAGGTGTGGTTCAATCAGGTAGAAAAGTGCTTCAGGGTTATGCGTTGTCCTGAAGACAGGAAACTTGATCTAGTTACCTATATGCTCCAGAAATGA

mRNA sequence

ATGCCCCGACGGAACAAACGAGGTAGGCAAGCAGATGTCGGAACATCGCACGCTACTGGTGGCTCTAGAGAGGCTTCTGAGGGGAAGTCTAGCAACCCTCAGGTGAATGTGAATATGGAGGATCAGATTTTCAATAGAATAACACAGAGATTGGCAACTAATGTTGAGTTAGTGGGAGATCCCTGGAGGAAGTACGAGATCGAGAGGTTCAAAGCGTTAGGTGCTCAAGTGTTCGAGGGTACCACTAATCCTGCCAATGTTGAGGTGTGGTTCAATCAGGTAGAAAAGTGCTTCAGGGTTATGCGTTGTCCTGAAGACAGGAAACTTGATCTAGTTACCTATATGCTCCAGAAATGA

Coding sequence (CDS)

ATGCCCCGACGGAACAAACGAGGTAGGCAAGCAGATGTCGGAACATCGCACGCTACTGGTGGCTCTAGAGAGGCTTCTGAGGGGAAGTCTAGCAACCCTCAGGTGAATGTGAATATGGAGGATCAGATTTTCAATAGAATAACACAGAGATTGGCAACTAATGTTGAGTTAGTGGGAGATCCCTGGAGGAAGTACGAGATCGAGAGGTTCAAAGCGTTAGGTGCTCAAGTGTTCGAGGGTACCACTAATCCTGCCAATGTTGAGGTGTGGTTCAATCAGGTAGAAAAGTGCTTCAGGGTTATGCGTTGTCCTGAAGACAGGAAACTTGATCTAGTTACCTATATGCTCCAGAAATGA

Protein sequence

MPRRNKRGRQADVGTSHATGGSREASEGKSSNPQVNVNMEDQIFNRITQRLATNVELVGDPWRKYEIERFKALGAQVFEGTTNPANVEVWFNQVEKCFRVMRCPEDRKLDLVTYMLQK
BLAST of Cla003871 vs. TrEMBL
Match: A0A0A0LI31_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 1

Query: 26  SEGKSSNPQVNVNMEDQIFNRITQRLATNVELVGDPWRKYEIERFKALGAQVFEGTTNPA 85
           SE  + NP      E+ +++R  QRL     L     + + IER KALGA  F G  N  
Sbjct: 7   SEAHALNPNARREEEEALYDRFAQRLIN--ALAQQLKKNFGIERVKALGATEFNGIENHE 66

Query: 86  NVEVWFNQVEKCFRVMRCPEDRKLDLVTYML 117
             E W   +EKCFRVM+CP++R+++L  ++L
Sbjct: 67  EAEKWIRTLEKCFRVMQCPKERRVNLAVFLL 95

BLAST of Cla003871 vs. TrEMBL
Match: A0A0A0L7X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-06
Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = 1

Query: 26  SEGKSSNPQVNVNMEDQIFNRITQRLATNVELVGDPWRKYEIERFKALGAQVFEGTTNPA 85
           SE  S N       ++ +++R+TQRL     +   P +K+ IER KALGA  F GTT P 
Sbjct: 3   SEAHSVNLNAMKEQKEVVYDRVTQRLVDI--MAHQPEKKFGIERLKALGATEFTGTTKPE 62

Query: 86  NVEVWFNQVEKCFR 100
             E W   +EKCFR
Sbjct: 63  EFEKWIRTLEKCFR 74

BLAST of Cla003871 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 6.8e-22
Identity = 61/122 (50.00%), Postives = 79/122 (64.75%), Query Frame = 1

Query: 1   MPRRNKRGRQADVGTSHATG----GSREASEGKSSNPQVNVNMEDQIFNRITQRLATNVE 60
           MPR   R +  D  TS+A      GS E S+ +SS P V  NME+Q+ +R+ QRL + + 
Sbjct: 20  MPRGRPR-KHPDAKTSNAAREAAMGSGE-SDAESSRPHVEGNMEEQLLDRLAQRLISGIR 79

Query: 61  LV-GDPWRKYEIERFKALGAQVFEGTTNPANVEVWFNQVEKCFRVMRCPEDRKLDLVTYM 118
               DP +KY IER KALGA  F GTTNPA+ E W   +EKCFRV RCPEDRK++L +++
Sbjct: 80  SAQSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELASFL 139

BLAST of Cla003871 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 3.1e-19
Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 1

Query: 1   MPRRNKRGRQADVGTSHATGGSREASE--GKSSNPQVNVNMEDQIFNRITQRLATNVELV 60
           MPR   R R     ++ A   + E+ E   +SS P V  N+E+Q+ +R+ QR  + ++  
Sbjct: 1   MPRGRPRKRPVAEASNAAREAAMESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKST 60

Query: 61  -GDPWRKYEIERFKALGAQVFEGTTNPANVEVWFNQVEKCFRVMRCPEDRKLDLVTYMLQ 118
             D  +K+EIER KALG+  F  TTNPAN E W   +EKCFRVMRC EDRK++L  ++LQ
Sbjct: 61  QSDLEKKFEIERLKALGSTTFARTTNPANAEAWLTLIEKCFRVMRCSEDRKVELSAFLLQ 120

BLAST of Cla003871 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 51/122 (41.80%), Postives = 79/122 (64.75%), Query Frame = 1

Query: 1   MPRRNKRGRQADVGTSHATGG---SREASEGKSSNPQVNVNMEDQIFNRITQRLATNVEL 60
           M R  K+ R  D+GT    GG     E SEG+SS+ Q ++ +++++ N+IT+ + T +  
Sbjct: 1   MSRGGKKRRLKDLGTQQIPGGRDLENEESEGESSHQQGDMTVDEKLLNKITEGITTGMRS 60

Query: 61  VGDPWRK-YEIERFKALGAQVFEGTTNPANVEVWFNQVEKCFRVMRCPEDRKLDLVTYML 119
           + +   K + IER KALGA  F  TT+P + E W N +EKCF+VMRC +DRK++L T++L
Sbjct: 61  LNNNLEKTFGIERLKALGATTFARTTDPTDGEGWMNVLEKCFKVMRCLDDRKVELATFLL 120

BLAST of Cla003871 vs. NCBI nr
Match: gi|659095113|ref|XP_008448403.1| (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16
Identity = 55/119 (46.22%), Postives = 69/119 (57.98%), Query Frame = 1

Query: 2   PRRNKRGRQADVGTSHATGGSREASEGKSSNPQVNVNMEDQIFNRITQRLATNVELVG-- 61
           PR ++R +Q    T   T G    SE  SS P+       + F R  Q +    E VG  
Sbjct: 3   PRTSRRHKQNQDETQDPTQGQ---SERGSSTPRGQNEAGSERFARSAQEIG-RPERVGPS 62

Query: 62  DPWRKYEIERFKALGAQVFEGTTNPANVEVWFNQVEKCFRVMRCPEDRKLDLVTYMLQK 119
           DP + Y IER K LGA VFEG+T+PAN EVW N +EKCF VM CP+ RK+ L T++LQK
Sbjct: 63  DPEKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQK 117

BLAST of Cla003871 vs. NCBI nr
Match: gi|659087174|ref|XP_008444312.1| (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1

Query: 26  SEGKSSNPQVNVNMEDQIFNRITQRLATNVEL-VGDPWRKYEIERFKALGAQVFEGTTNP 85
           SE  SS P+    +  + F R  Q ++        D  + Y IE+ K LGA VF+G+T+P
Sbjct: 9   SERGSSTPRGQNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQGSTDP 68

Query: 86  ANVEVWFNQVEKCFRVMRCPEDRKLDLVTYMLQK 119
           A+ EVW N +EKCF VM CP+++K+ L T++LQK
Sbjct: 69  ADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQK 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LI31_CUCSA1.6e-0938.46Uncharacterized protein OS=Cucumis sativus GN=Csa_2G163160 PE=4 SV=1[more]
A0A0A0L7X2_CUCSA2.8e-0641.89Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659072264|ref|XP_008464580.1|6.8e-2250.00PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659068829|ref|XP_008446512.1|3.1e-1944.17PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|2.7e-1841.80PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|659095113|ref|XP_008448403.1|2.5e-1646.22PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo][more]
gi|659087174|ref|XP_008444312.1|2.4e-1142.55PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003871Cla003871.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None