Cla003814 (gene) Watermelon (97103) v1

NameCla003814
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionFlavoprotein wrbA (AHRD V1 *-*- B6T4R2_MAIZE)
LocationChr10 : 6765826 .. 6766363 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGCTGCTCAATTCAAATCATTTCTAGATTCAACTGGAGGTCTTTGGAAAACCCAACAACTTGCAGGCAAGCCTGCTGGTATCTTTTTTGGTACTGGATCCCCGGGAGGTGGGCAAGAAACTACCGCGTAAATTCCACATATCATTTCTTTATTCTGCTAAACCCAAGGCATCTCAAATAATATGAATACAACCATTTGAGGAATCTTTTGACTTGAAAACAATTATGCATCTCAACAGGTTGACTACCATCACTAAAATAACCCACCACGGAATGATATTCGTACCCATTGGTTACACTTTCGGCGCTGGCATGTTTGAGATGGAGCATGTTAAGGTGGAAGCTCTTAAGGAGCTGGAACTTTCGCAGGTGATGGCTCCAGAAAACCAACCACTCTCGAGTTGGAGCAAGCCTTCCACCAAGGAAAGTATCTTGCTACTATCACAGAGAAGTTCAAGGGATCAGCCTAAACTCAAGTTTACCTATCAAAGTTACTGTATGAAAAACCATTTCCCTTTTTTTTTCACCATTTGA

mRNA sequence

ATGATGGCTGCTCAATTCAAATCATTTCTAGATTCAACTGGAGGTCTTTGGAAAACCCAACAACTTGCAGGCAAGCCTGCTGGTATCTTTTTTGGTACTGGATCCCCGGGAGGTGGGCAAGAAACTACCGCGTTGACTACCATCACTAAAATAACCCACCACGGAATGATATTCGTACCCATTGGTTACACTTTCGGCGCTGGCATGTTTGAGATGGAGCATGTTAAGGTGGAAGCTCTTAAGGAGCTGGAACTTTCGCAGGTGATGGCTCCAGAAAACCAACCACTCTCGAGTTGGAGCAAGCCTTCCACCAAGGAAAGTATCTTGCTACTATCACAGAGAAGTTCAAGGGATCAGCCTAAACTCAAGTTTACCTATCAAAGTTACTGTATGAAAAACCATTTCCCTTTTTTTTTCACCATTTGA

Coding sequence (CDS)

ATGATGGCTGCTCAATTCAAATCATTTCTAGATTCAACTGGAGGTCTTTGGAAAACCCAACAACTTGCAGGCAAGCCTGCTGGTATCTTTTTTGGTACTGGATCCCCGGGAGGTGGGCAAGAAACTACCGCGTTGACTACCATCACTAAAATAACCCACCACGGAATGATATTCGTACCCATTGGTTACACTTTCGGCGCTGGCATGTTTGAGATGGAGCATGTTAAGGTGGAAGCTCTTAAGGAGCTGGAACTTTCGCAGGTGATGGCTCCAGAAAACCAACCACTCTCGAGTTGGAGCAAGCCTTCCACCAAGGAAAGTATCTTGCTACTATCACAGAGAAGTTCAAGGGATCAGCCTAAACTCAAGTTTACCTATCAAAGTTACTGTATGAAAAACCATTTCCCTTTTTTTTTCACCATTTGA

Protein sequence

MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVPIGYTFGAGMFEMEHVKVEALKELELSQVMAPENQPLSSWSKPSTKESILLLSQRSSRDQPKLKFTYQSYCMKNHFPFFFTI
BLAST of Cla003814 vs. Swiss-Prot
Match: FQRL1_ARATH (Probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 OS=Arabidopsis thaliana GN=At4g27270 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.8e-33
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLD+TGGLW+TQQLAGKPAGIF+ TGS GGGQETTALT IT++ HHGMIFVP
Sbjct: 84  MMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTALTAITQLVHHGMIFVP 143

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME+VK
Sbjct: 144 IGYTFGAGMFEMENVK 159

BLAST of Cla003814 vs. Swiss-Prot
Match: FQR1_ARATH (NAD(P)H dehydrogenase (quinone) FQR1 OS=Arabidopsis thaliana GN=FQR1 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-31
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLD+TGGLW+ Q LAGKPAGIF+ TGS GGGQETTALT IT++ HHGM+FVP
Sbjct: 84  MMAAQFKAFLDATGGLWRAQALAGKPAGIFYSTGSQGGGQETTALTAITQLVHHGMLFVP 143

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME+VK
Sbjct: 144 IGYTFGAGMFEMENVK 159

BLAST of Cla003814 vs. Swiss-Prot
Match: FQRL2_ARATH (Probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 OS=Arabidopsis thaliana GN=At4g36750 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.1e-26
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1

Query: 2   MAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVPI 61
           MAAQ K+F DSTG LWK Q LAGKPAG F  TG+ GGGQETTA T IT++ HHGM+FVPI
Sbjct: 156 MAAQMKAFFDSTGSLWKEQSLAGKPAGFFVSTGTQGGGQETTAWTAITQLVHHGMLFVPI 215

Query: 62  GYTFGAGMFEMEHVK 77
           GYTFGAGMF+M+ ++
Sbjct: 216 GYTFGAGMFKMDSIR 230

BLAST of Cla003814 vs. Swiss-Prot
Match: FQRL3_ARATH (Probable NAD(P)H dehydrogenase (quinone) FQR1-like 3 OS=Arabidopsis thaliana GN=At5g58800 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-23
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           +MA+Q  +F D+T  LW TQ LAGKPAGIF+ TG  GGGQE TALT +TK+ HHGMIFVP
Sbjct: 86  VMASQVMTFFDNTNDLWTTQALAGKPAGIFWSTGFHGGGQELTALTAVTKLAHHGMIFVP 145

Query: 61  IGYTFGAGMFEMEHVK 77
           +GYTFG  M+EM  VK
Sbjct: 146 VGYTFGKSMYEMGEVK 161

BLAST of Cla003814 vs. Swiss-Prot
Match: P25_SCHPO (P25 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=obr1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-15
Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 1

Query: 4   AQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVPIGY 63
           AQF++F DSTGGLW    L GK  G FF TG+ GGGQE+TALT +T   HHGMIFVP+GY
Sbjct: 88  AQFRTFWDSTGGLWVQGALHGKYFGQFFSTGTLGGGQESTALTAMTSFVHHGMIFVPLGY 147

BLAST of Cla003814 vs. TrEMBL
Match: A0A0J8BEX6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g092600 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.9e-32
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLDSTGGLW+TQQLAGKPAG+FF TGS GGGQETTALT IT++THHGMIFVP
Sbjct: 33  MMAAQFKAFLDSTGGLWRTQQLAGKPAGLFFSTGSQGGGQETTALTAITQLTHHGMIFVP 92

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME+VK
Sbjct: 93  IGYTFGAGMFEMENVK 108

BLAST of Cla003814 vs. TrEMBL
Match: A0A0K9RRW5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_041140 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.9e-32
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLDSTGGLW+TQQLAGKPAG+FF TGS GGGQETTALT IT++THHGMIFVP
Sbjct: 73  MMAAQFKAFLDSTGGLWRTQQLAGKPAGLFFSTGSQGGGQETTALTAITQLTHHGMIFVP 132

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME+VK
Sbjct: 133 IGYTFGAGMFEMENVK 148

BLAST of Cla003814 vs. TrEMBL
Match: U5GWE6_POPTR (FLAVODOXIN-LIKE QUINONE REDUCTASE 1 family protein OS=Populus trichocarpa GN=POPTR_0001s43940g PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.0e-31
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLD+TGGLWKTQQLAGKPAGIFF TGS GGGQETTALT IT++ HHGMIFVP
Sbjct: 84  MMAAQFKAFLDATGGLWKTQQLAGKPAGIFFSTGSQGGGQETTALTAITQLVHHGMIFVP 143

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME VK
Sbjct: 144 IGYTFGAGMFEMEKVK 159

BLAST of Cla003814 vs. TrEMBL
Match: A0A0A0L325_CUCSA (Minor allergen Alt a OS=Cucumis sativus GN=Csa_3G081930 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.0e-31
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLD+TGGLW+TQQLAGKPAGIF+ TGS GGGQETTALT IT++THHGMIFVP
Sbjct: 84  MMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTALTAITQLTHHGMIFVP 143

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME VK
Sbjct: 144 IGYTFGAGMFEMEQVK 159

BLAST of Cla003814 vs. TrEMBL
Match: B9I056_POPTR (FLAVODOXIN-LIKE QUINONE REDUCTASE 1 family protein OS=Populus trichocarpa GN=POPTR_0011s13310g PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.6e-31
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLD+TGGLWKTQQLAGKPAG+FF TGS GGGQETTALT IT++ HHGMIFVP
Sbjct: 84  MMAAQFKAFLDATGGLWKTQQLAGKPAGMFFSTGSQGGGQETTALTAITQLVHHGMIFVP 143

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME VK
Sbjct: 144 IGYTFGAGMFEMEKVK 159

BLAST of Cla003814 vs. NCBI nr
Match: gi|870845921|gb|KMS98573.1| (hypothetical protein BVRB_4g092600 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-31
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLDSTGGLW+TQQLAGKPAG+FF TGS GGGQETTALT IT++THHGMIFVP
Sbjct: 33  MMAAQFKAFLDSTGGLWRTQQLAGKPAGLFFSTGSQGGGQETTALTAITQLTHHGMIFVP 92

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME+VK
Sbjct: 93  IGYTFGAGMFEMENVK 108

BLAST of Cla003814 vs. NCBI nr
Match: gi|731365038|ref|XP_010694306.1| (PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-31
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLDSTGGLW+TQQLAGKPAG+FF TGS GGGQETTALT IT++THHGMIFVP
Sbjct: 84  MMAAQFKAFLDSTGGLWRTQQLAGKPAGLFFSTGSQGGGQETTALTAITQLTHHGMIFVP 143

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME+VK
Sbjct: 144 IGYTFGAGMFEMENVK 159

BLAST of Cla003814 vs. NCBI nr
Match: gi|902229867|gb|KNA21634.1| (hypothetical protein SOVF_041140 [Spinacia oleracea])

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-31
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLDSTGGLW+TQQLAGKPAG+FF TGS GGGQETTALT IT++THHGMIFVP
Sbjct: 73  MMAAQFKAFLDSTGGLWRTQQLAGKPAGLFFSTGSQGGGQETTALTAITQLTHHGMIFVP 132

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME+VK
Sbjct: 133 IGYTFGAGMFEMENVK 148

BLAST of Cla003814 vs. NCBI nr
Match: gi|566154710|ref|XP_006370577.1| (FLAVODOXIN-LIKE QUINONE REDUCTASE 1 family protein [Populus trichocarpa])

HSP 1 Score: 142.9 bits (359), Expect = 4.3e-31
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLD+TGGLWKTQQLAGKPAGIFF TGS GGGQETTALT IT++ HHGMIFVP
Sbjct: 84  MMAAQFKAFLDATGGLWKTQQLAGKPAGIFFSTGSQGGGQETTALTAITQLVHHGMIFVP 143

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME VK
Sbjct: 144 IGYTFGAGMFEMEKVK 159

BLAST of Cla003814 vs. NCBI nr
Match: gi|449466103|ref|XP_004150766.1| (PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 4.3e-31
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 1

Query: 1   MMAAQFKSFLDSTGGLWKTQQLAGKPAGIFFGTGSPGGGQETTALTTITKITHHGMIFVP 60
           MMAAQFK+FLD+TGGLW+TQQLAGKPAGIF+ TGS GGGQETTALT IT++THHGMIFVP
Sbjct: 84  MMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTALTAITQLTHHGMIFVP 143

Query: 61  IGYTFGAGMFEMEHVK 77
           IGYTFGAGMFEME VK
Sbjct: 144 IGYTFGAGMFEMEQVK 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
FQRL1_ARATH7.8e-3385.53Probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 OS=Arabidopsis thaliana GN=... [more]
FQR1_ARATH2.5e-3181.58NAD(P)H dehydrogenase (quinone) FQR1 OS=Arabidopsis thaliana GN=FQR1 PE=1 SV=1[more]
FQRL2_ARATH4.1e-2670.67Probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 OS=Arabidopsis thaliana GN=... [more]
FQRL3_ARATH1.9e-2365.79Probable NAD(P)H dehydrogenase (quinone) FQR1-like 3 OS=Arabidopsis thaliana GN=... [more]
P25_SCHPO1.5e-1565.00P25 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=obr1 PE=1 ... [more]
Match NameE-valueIdentityDescription
A0A0J8BEX6_BETVU7.9e-3288.16Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g092600 PE=4 S... [more]
A0A0K9RRW5_SPIOL7.9e-3288.16Uncharacterized protein OS=Spinacia oleracea GN=SOVF_041140 PE=4 SV=1[more]
U5GWE6_POPTR3.0e-3188.16FLAVODOXIN-LIKE QUINONE REDUCTASE 1 family protein OS=Populus trichocarpa GN=POP... [more]
A0A0A0L325_CUCSA3.0e-3186.84Minor allergen Alt a OS=Cucumis sativus GN=Csa_3G081930 PE=3 SV=1[more]
B9I056_POPTR6.6e-3186.84FLAVODOXIN-LIKE QUINONE REDUCTASE 1 family protein OS=Populus trichocarpa GN=POP... [more]
Match NameE-valueIdentityDescription
gi|870845921|gb|KMS98573.1|1.1e-3188.16hypothetical protein BVRB_4g092600 [Beta vulgaris subsp. vulgaris][more]
gi|731365038|ref|XP_010694306.1|1.1e-3188.16PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1 [Beta vulgaris subsp. vulgaris][more]
gi|902229867|gb|KNA21634.1|1.1e-3188.16hypothetical protein SOVF_041140 [Spinacia oleracea][more]
gi|566154710|ref|XP_006370577.1|4.3e-3188.16FLAVODOXIN-LIKE QUINONE REDUCTASE 1 family protein [Populus trichocarpa][more]
gi|449466103|ref|XP_004150766.1|4.3e-3186.84PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Cucumis sativus... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006694 steroid biosynthetic process
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
molecular_function GO:0010181 FMN binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0003955 NAD(P)H dehydrogenase (quinone) activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003814Cla003814.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR30546FLAVODOXIN-RELATED PROTEIN WRBA-RELATEDcoord: 1..76
score: 2.8