Cla003813 (gene) Watermelon (97103) v1

NameCla003813
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr8 : 11564048 .. 11564476 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGAAGCTGATGTTGCCAACAATCTTGCAGCGCAGCTCGCCAATATGACATCCATGCTGCAAACACTAGTCTTGAGAAATCAAGGTAGACCAGTTGCTGCGATGAACGCAGTGCATGCGATGAACTCGACAGCATCTGTAGACTACCCGCAGTGTGGTGGGGGGCACTTGTATGACATGTGTCCCTACAACCTCCAGTCTATCTGTAGTATTCAAAACAACCCCTACGACAATTTGGGTTGGAGGAACCACCTTAACTTCGGATGGGGTGGGAATCAACAACAAATGCAGAAGGCTGAGCCGCAGCCGCAGAGAGGCATTCCTCCTGGTTTCAACCAATGGAATCAAGACCAGTATCATCAGTTTTCAAGGGATCCGCAAGCGGACGAATCATCCTCATTGTCTTCCCTGGAATTTCTTTTATGA

mRNA sequence

ATGCTTGAAGCTGATGTTGCCAACAATCTTGCAGCGCAGCTCGCCAATATGACATCCATGCTGCAAACACTAGTCTTGAGAAATCAAGGTAGACCAGTTGCTGCGATGAACGCAGTGCATGCGATGAACTCGACAGCATCTGTAGACTACCCGCAGTGTGGTGGGGGGCACTTGTATGACATGTGTCCCTACAACCTCCAGTCTATCTGTAGTATTCAAAACAACCCCTACGACAATTTGGGTTGGAGGAACCACCTTAACTTCGGATGGGGTGGGAATCAACAACAAATGCAGAAGGCTGAGCCGCAGCCGCAGAGAGGCATTCCTCCTGGTTTCAACCAATGGAATCAAGACCAGTATCATCAGTTTTCAAGGGATCCGCAAGCGGACGAATCATCCTCATTGTCTTCCCTGGAATTTCTTTTATGA

Coding sequence (CDS)

ATGCTTGAAGCTGATGTTGCCAACAATCTTGCAGCGCAGCTCGCCAATATGACATCCATGCTGCAAACACTAGTCTTGAGAAATCAAGGTAGACCAGTTGCTGCGATGAACGCAGTGCATGCGATGAACTCGACAGCATCTGTAGACTACCCGCAGTGTGGTGGGGGGCACTTGTATGACATGTGTCCCTACAACCTCCAGTCTATCTGTAGTATTCAAAACAACCCCTACGACAATTTGGGTTGGAGGAACCACCTTAACTTCGGATGGGGTGGGAATCAACAACAAATGCAGAAGGCTGAGCCGCAGCCGCAGAGAGGCATTCCTCCTGGTTTCAACCAATGGAATCAAGACCAGTATCATCAGTTTTCAAGGGATCCGCAAGCGGACGAATCATCCTCATTGTCTTCCCTGGAATTTCTTTTATGA

Protein sequence

MLEADVANNLAAQLANMTSMLQTLVLRNQGRPVAAMNAVHAMNSTASVDYPQCGGGHLYDMCPYNLQSICSIQNNPYDNLGWRNHLNFGWGGNQQQMQKAEPQPQRGIPPGFNQWNQDQYHQFSRDPQADESSSLSSLEFLL
BLAST of Cla003813 vs. TrEMBL
Match: M1DHF5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400038665 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-06
Identity = 43/111 (38.74%), Postives = 52/111 (46.85%), Query Frame = 1

Query: 1   MLEADVANNLAAQLANMTSMLQTLVLRNQ-GRPVAAMNAVHAMNSTASVDYPQCGGG-HL 60
           MLE D    L AQ+  M  M+ T     + G+  A +NAV    S   +    CGGG H 
Sbjct: 91  MLEVDAVTALTAQIDAMQKMMNTHFNNLELGQLPAQVNAVQQPPSWCEI----CGGGDHS 150

Query: 61  YDMCPYNLQSICSIQN-----------NPYDNLGWRNHLNFGWGGNQQQMQ 99
            D+C  NL S+  + N           N Y N  WRNH NF WGGNQ Q Q
Sbjct: 151 ADVCGANLDSVNFVGNAQRGRGQQNYGNSY-NPSWRNHPNFSWGGNQNQGQ 196

BLAST of Cla003813 vs. NCBI nr
Match: gi|698560239|ref|XP_009771790.1| (PREDICTED: uncharacterized protein LOC104222275 [Nicotiana sylvestris])

HSP 1 Score: 65.5 bits (158), Expect = 8.8e-08
Identity = 38/120 (31.67%), Postives = 60/120 (50.00%), Query Frame = 1

Query: 1   MLEADVANNLAAQLANMTSMLQTLVLRNQGRPVAAMNAVHAMNSTASVDYPQCGGGHLYD 60
           +LE DV + L+AQ++ +T+ +  + +    +   ++  V   +         CG GH+ +
Sbjct: 272 VLELDVVSALSAQISTLTNQVNQMTMIINKQQAQSVKQVQIFSEV-------CGEGHVSN 331

Query: 61  MCPYNLQSICSI------QNNPYD---NLGWRNHLNFGWGGNQQQMQKAEPQ-PQRGIPP 111
           +CP N +S+  +      Q N Y    NL WRNH NF WGGNQ    +  PQ PQ+   P
Sbjct: 332 LCPSNPESVYFVGNANRGQTNQYGDTYNLNWRNHPNFSWGGNQGTQNQYRPQAPQQQYRP 384

BLAST of Cla003813 vs. NCBI nr
Match: gi|698464914|ref|XP_009782549.1| (PREDICTED: uncharacterized protein LOC104231280 [Nicotiana sylvestris])

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 45/147 (30.61%), Postives = 63/147 (42.86%), Query Frame = 1

Query: 1   MLEADVANNLAAQLANMTSMLQTLVLRNQGRPVAAMNAVHAMNSTASVDYPQCGGGHLYD 60
           +LE DV + L+AQ++ +T+ +  + L    + V  + A   +          C  GH  D
Sbjct: 191 VLELDVISALSAQISTLTNQVNQMNLSMNKQQVQQVQAFCEI----------CEEGHTSD 250

Query: 61  MCPYNLQSICSI------QNNPYDNL---GWRNHLNFGWGGNQQQMQKAEPQPQRGIPPG 120
           MCP N +SIC +      Q N Y N     WR H NF WGGNQ    +  PQ        
Sbjct: 251 MCPTNPESICFVGNSNRGQTNQYGNTYNPNWRKHPNFSWGGNQGTQNQYRPQAP------ 310

Query: 121 FNQWNQDQYHQFSRDPQADESSSLSSL 139
                Q QY     + QA  +S L  +
Sbjct: 311 -----QQQYRPLQVEQQAIPTSHLEEM 316

BLAST of Cla003813 vs. NCBI nr
Match: gi|697135442|ref|XP_009621775.1| (PREDICTED: uncharacterized protein LOC104113353 [Nicotiana tomentosiformis])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 37/112 (33.04%), Postives = 54/112 (48.21%), Query Frame = 1

Query: 1   MLEADVANNLAAQLANMTSMLQTLVLRNQGRPVAAMNAVHAMNSTASVDYPQCGGGHLYD 60
           +LE DV + L+AQ+A +++    + L    +   +M  V             CG GH+ D
Sbjct: 180 VLELDVFSTLSAQVATLSNQDNKMTLVINKKQAQSMQQVQIFCDV-------CGDGHMSD 239

Query: 61  MCPYNLQSICSI------QNNPYDNL---GWRNHLNFGWGGNQQQMQKAEPQ 104
           +CP N +S+C +      Q N Y N     WRN+ NF WGGNQ    +  PQ
Sbjct: 240 LCPDNPESVCFMGNSNRGQTNQYGNTYNPNWRNNPNFSWGGNQSAWNQYRPQ 284

BLAST of Cla003813 vs. NCBI nr
Match: gi|698560088|ref|XP_009771754.1| (PREDICTED: uncharacterized protein LOC104222240 [Nicotiana sylvestris])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 46/149 (30.87%), Postives = 65/149 (43.62%), Query Frame = 1

Query: 1   MLEADVANNLAAQLANMTSMLQTLVLRNQGRPVAAMNAVHAMNSTASVDYPQCGGGHLYD 60
           +LE D  + + A +A + + +  + ++        M  VH M     +    CG  H+ D
Sbjct: 178 LLELDEVSAMRADIAKLANQMTRMTMQQP----QTMQHVHQMTIYCEL----CGDSHMSD 237

Query: 61  MCPYNLQSICSI---------QNNPYDNL---GWRNHLNFGWGGNQQQMQKAEPQPQRGI 120
           MCP N +SI  +         Q+  Y+N     WRNH NF WGGNQQ   +  PQ     
Sbjct: 238 MCPTNPESIYYVGQQHRGPPNQHAQYENSYNPNWRNHPNFSWGGNQQNQNQHRPQ----- 297

Query: 121 PPGFNQWNQDQYHQFSRDPQADESSSLSS 138
                 +NQ Q     R PQ  E S+L S
Sbjct: 298 ----GSFNQPQ-----RPPQQMEESALPS 304

BLAST of Cla003813 vs. NCBI nr
Match: gi|698518879|ref|XP_009804304.1| (PREDICTED: uncharacterized protein LOC104249561 [Nicotiana sylvestris])

HSP 1 Score: 62.4 bits (150), Expect = 7.4e-07
Identity = 50/148 (33.78%), Postives = 65/148 (43.92%), Query Frame = 1

Query: 2   LEADVANNLAAQLANMTSMLQTLVLRNQGRPVAAMNAVHAMNSTASVDYPQCGGGHLYDM 61
           + AD+A  LA Q+  MT M Q   ++            H    T  + Y  CG  H+ DM
Sbjct: 1   MSADIAK-LANQMTRMT-MQQPQTMQ------------HVQQMT--ICYELCGNSHMSDM 60

Query: 62  CPYNLQSICSI---------QNNPYDN---LGWRNHLNFGWGGNQQQMQKAEPQPQRGIP 121
           CP N +SI  +         Q+  Y+N   L WRNH NF WGGNQQ   +  PQ      
Sbjct: 61  CPTNPESIYYVGQQNRDPPNQHTQYENSYNLNWRNHPNFSWGGNQQNQNQHRPQ------ 118

Query: 122 PGFNQWNQDQYHQFSRDPQADESSSLSS 138
                +NQ Q     R PQ  + S+L S
Sbjct: 121 ---GSFNQPQ-----RPPQQMKESALPS 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
M1DHF5_SOLTU5.7e-0638.74Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400038665 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|698560239|ref|XP_009771790.1|8.8e-0831.67PREDICTED: uncharacterized protein LOC104222275 [Nicotiana sylvestris][more]
gi|698464914|ref|XP_009782549.1|1.5e-0730.61PREDICTED: uncharacterized protein LOC104231280 [Nicotiana sylvestris][more]
gi|697135442|ref|XP_009621775.1|1.9e-0733.04PREDICTED: uncharacterized protein LOC104113353 [Nicotiana tomentosiformis][more]
gi|698560088|ref|XP_009771754.1|1.9e-0730.87PREDICTED: uncharacterized protein LOC104222240 [Nicotiana sylvestris][more]
gi|698518879|ref|XP_009804304.1|7.4e-0733.78PREDICTED: uncharacterized protein LOC104249561 [Nicotiana sylvestris][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003813Cla003813.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None