Cla003812 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003812
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 11547432 .. 11547788 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAAGCAAGGCTTTGCTTAAGGGGAACATGAAGATGGTTATAAAGTTATGGATGTTGCTGGATTTGCCTTTGGGAGTGATCCAGTTTGTGTTTCTTCACTATTTGGTTGTTAGGTCAGCATGGGTGGATAGGGGTATCTTGGGGATTTGCTGGGTGTTGTTGTTTTTGGTGTTCTTTTTGGTGAAGCTTGTGTTGGAAACTGTGGTGTATTTTGTTTGCAAATTGTATCATTGCGAGAACGTTGATAAGTTGGCTCTGTGGAACCATCTTCAAGGTTATCGATCAGCTCATCACTATGACCAGTTGAAGGTTGATGACGAAGTTCAGCTTGAGAAATTGCAAGTTGTTTGA

mRNA sequence

ATGGCGAAAAGCAAGGCTTTGCTTAAGGGGAACATGAAGATGGTTATAAAGTTATGGATGTTGCTGGATTTGCCTTTGGGAGTGATCCAGTTTGTGTTTCTTCACTATTTGGTTGTTAGGTCAGCATGGGTGGATAGGGGTATCTTGGGGATTTGCTGGGTGTTGTTGTTTTTGGTGTTCTTTTTGGTGAAGCTTGTGTTGGAAACTGTGGTGTATTTTGTTTGCAAATTGTATCATTGCGAGAACGTTGATAAGTTGGCTCTGTGGAACCATCTTCAAGGTTATCGATCAGCTCATCACTATGACCAGTTGAAGGTTGATGACGAAGTTCAGCTTGAGAAATTGCAAGTTGTTTGA

Coding sequence (CDS)

ATGGCGAAAAGCAAGGCTTTGCTTAAGGGGAACATGAAGATGGTTATAAAGTTATGGATGTTGCTGGATTTGCCTTTGGGAGTGATCCAGTTTGTGTTTCTTCACTATTTGGTTGTTAGGTCAGCATGGGTGGATAGGGGTATCTTGGGGATTTGCTGGGTGTTGTTGTTTTTGGTGTTCTTTTTGGTGAAGCTTGTGTTGGAAACTGTGGTGTATTTTGTTTGCAAATTGTATCATTGCGAGAACGTTGATAAGTTGGCTCTGTGGAACCATCTTCAAGGTTATCGATCAGCTCATCACTATGACCAGTTGAAGGTTGATGACGAAGTTCAGCTTGAGAAATTGCAAGTTGTTTGA

Protein sequence

MAKSKALLKGNMKMVIKLWMLLDLPLGVIQFVFLHYLVVRSAWVDRGILGICWVLLFLVFFLVKLVLETVVYFVCKLYHCENVDKLALWNHLQGYRSAHHYDQLKVDDEVQLEKLQVV

Homology

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BLAST of Cla003812 vs. TrEMBL
Match: A0A0A0KFW2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398210 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-42
Identity = 89/121 (73.55%), Postives = 96/121 (79.34%), Query Frame = 1


Query: 1   MAKSKALLKGNMKMVIKLWMLLDLPLGVIQFVFLHYLVVRSAWVDRGILGICWVLLFLVF 60
           + KSK LLKG MKMVIKLW+LLD PLGVIQF  LHY V RS WV   ILGICWVL F+VF
Sbjct: 228 LEKSKNLLKGKMKMVIKLWVLLDFPLGVIQFALLHYFVTRSTWVGWSILGICWVLSFMVF 287

Query: 61  FLVKLVLETVVYFVCKLYHCENVDKLALWNHLQGYRSAHHYDQLKVDDE---VQLEKLQV 119
            LVKLVLETVVYFVCKL+H E VD + LWNHLQGY   HHYDQLKVDD+   VQLEK+Q 
Sbjct: 288 VLVKLVLETVVYFVCKLHHGEMVDMMPLWNHLQGYVLPHHYDQLKVDDDNNSVQLEKIQA 347

[Close]

BLAST of Cla003812 vs. TrEMBL
Match: A0A0A0KIZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399220 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 56/109 (51.38%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 12  MKMVIKLWMLLDLPLGVIQFVFLHYLVVRS--AWVDRGILGICWVLLFLVFFLVKLVLET 71
           M+MVIKL+ LL LP+ V+Q VF H+LV  +    V + +L I W+LL   F LV LV +T
Sbjct: 1   MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT 60

Query: 72  VVYFVCKLYHCENVDKLALWNHLQGYRSAHHYDQLKVDDEVQLEKLQVV 119
           V+YFVCK YH E  +KL++ + LQ Y    HYD LKV+D+V  EKLQ+V
Sbjct: 61  VLYFVCKSYHQELAEKLSISDRLQRYLLT-HYDPLKVEDDVPTEKLQIV 108

[Close]

BLAST of Cla003812 vs. TrEMBL
Match: A0A0A0KDW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398200 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-18
Identity = 59/119 (49.58%), Postives = 77/119 (64.71%), Query Frame = 1


Query: 1   MAKSKALLKGNMKMVIKLWMLLDLPLGVIQFVFLHYLVVRSAW--VDRGILGICWVLLFL 60
           M KS  L+KG +   + + + L LPLG ++FVF H +V  S+   + +G LGI   LLF 
Sbjct: 222 MGKSYGLVKGKLGTSVVIILCLSLPLGTVRFVFGHLVVRTSSLGILSKGTLGILCFLLFF 281

Query: 61  VFFLVKLVLETVVYFVCKLYHCENVDKLALWNHLQGYRSAHHYDQLKVDDEVQLEKLQV 118
           +FFL+KLV ETV+YFVCK YH EN+DK AL +HL+ Y     Y  L+  D VQLEK QV
Sbjct: 282 IFFLLKLVTETVLYFVCKSYHHENIDKSALSDHLEVYLLG-EYVPLRPRD-VQLEKFQV 338

[Close]

BLAST of Cla003812 vs. TrEMBL
Match: A0A0A0KBZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020210 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-16
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 1   MAKSKALLKGNMKMVIKLWMLLDLPLGVIQFVFLHYLVVRSAW---VDRGILGICWVLLF 60
           M KSKALLKGNM +   + +L+++ L +IQ  F+  LVV   W   + RGILGI  + L 
Sbjct: 175 MVKSKALLKGNMLVATLMLLLINISLVIIQQAFVK-LVVHGVWFGILGRGILGIVCLFLL 234

Query: 61  LVFFLVKLVLETVVYFVCKLYHCENVDKLALWNHLQGY 96
           L FFL +LVLETV+YFVCK  H EN+DK AL NHLQ Y
Sbjct: 235 LNFFLWQLVLETVLYFVCKEQHQENIDKSALSNHLQVY 271

[Close]

BLAST of Cla003812 vs. TrEMBL
Match: A0A067LG03_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25260 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-14
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 1   MAKSKALLKGNMKMVIKLWMLLDLPLGVIQFVFLHYLVVRS-----AWVDRGILGICWVL 60
           M KSKAL+KG + M   ++ +L++ L +IQF F   LVV         V+R   GI  +L
Sbjct: 217 MVKSKALIKGKIWMTSIIFFMLNVSLFIIQFAF-ERLVVHGHRRSIGMVNRVSYGIICLL 276

Query: 61  LFLVFFLVKLVLETVVYFVCKLYHCENVDKLALWNHLQGYRSAHHYDQLKVDDEVQLEKL 119
           L L+FFL  LV++TV+YFVCK +H EN+DK AL +HL+ Y     Y  LK  D VQLE+L
Sbjct: 277 LLLMFFLFGLVIQTVIYFVCKSFHHENIDKSALSDHLEVYLG--EYVPLKAKD-VQLEQL 335

[Close]

BLAST of Cla003812 vs. NCBI nr
Match: gi|778722278|ref|XP_011658450.1| (PREDICTED: uncharacterized protein LOC105436009 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 3.5e-42
Identity = 89/121 (73.55%), Postives = 96/121 (79.34%), Query Frame = 1


Query: 1   MAKSKALLKGNMKMVIKLWMLLDLPLGVIQFVFLHYLVVRSAWVDRGILGICWVLLFLVF 60
           + KSK LLKG MKMVIKLW+LLD PLGVIQF  LHY V RS WV   ILGICWVL F+VF
Sbjct: 96  LEKSKNLLKGKMKMVIKLWVLLDFPLGVIQFALLHYFVTRSTWVGWSILGICWVLSFMVF 155

Query: 61  FLVKLVLETVVYFVCKLYHCENVDKLALWNHLQGYRSAHHYDQLKVDDE---VQLEKLQV 119
            LVKLVLETVVYFVCKL+H E VD + LWNHLQGY   HHYDQLKVDD+   VQLEK+Q 
Sbjct: 156 VLVKLVLETVVYFVCKLHHGEMVDMMPLWNHLQGYVLPHHYDQLKVDDDNNSVQLEKIQA 215

[Close]

BLAST of Cla003812 vs. NCBI nr
Match: gi|700192540|gb|KGN47744.1| (hypothetical protein Csa_6G398210 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 3.5e-42
Identity = 89/121 (73.55%), Postives = 96/121 (79.34%), Query Frame = 1


Query: 1   MAKSKALLKGNMKMVIKLWMLLDLPLGVIQFVFLHYLVVRSAWVDRGILGICWVLLFLVF 60
           + KSK LLKG MKMVIKLW+LLD PLGVIQF  LHY V RS WV   ILGICWVL F+VF
Sbjct: 228 LEKSKNLLKGKMKMVIKLWVLLDFPLGVIQFALLHYFVTRSTWVGWSILGICWVLSFMVF 287

Query: 61  FLVKLVLETVVYFVCKLYHCENVDKLALWNHLQGYRSAHHYDQLKVDDE---VQLEKLQV 119
            LVKLVLETVVYFVCKL+H E VD + LWNHLQGY   HHYDQLKVDD+   VQLEK+Q 
Sbjct: 288 VLVKLVLETVVYFVCKLHHGEMVDMMPLWNHLQGYVLPHHYDQLKVDDDNNSVQLEKIQA 347

[Close]

BLAST of Cla003812 vs. NCBI nr
Match: gi|778722281|ref|XP_011658451.1| (PREDICTED: uncharacterized protein LOC105436010 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 3.6e-23
Identity = 64/120 (53.33%), Postives = 84/120 (70.00%), Query Frame = 1


Query: 1   MAKSKALLKGNMKMVIKLWMLLDLPLGVIQFVFLHYLVVRS--AWVDRGILGICWVLLFL 60
           MA+SKAL+KG M+MVIKL+ LL LP+ V+Q VF H+LV  +    V + +L I W+LL  
Sbjct: 40  MARSKALVKGKMRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLS 99

Query: 61  VFFLVKLVLETVVYFVCKLYHCENVDKLALWNHLQGYRSAHHYDQLKVDDEVQLEKLQVV 119
            F LV LV +TV+YFVCK YH E  +KL++ + LQ Y    HYD LKV+D+V  EKLQ+V
Sbjct: 100 FFLLVSLVAQTVLYFVCKSYHQELAEKLSISDRLQRYLLT-HYDPLKVEDDVPTEKLQIV 158

[Close]

BLAST of Cla003812 vs. NCBI nr
Match: gi|659133528|ref|XP_008466772.1| (PREDICTED: uncharacterized protein LOC103504102 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-20
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 1


Query: 1   MAKSKALLKGNMKMVIKLWMLLDLPLGVIQFVFLHYLVVRS--AWVDRGILGICWVLLFL 60
           MA+SKAL+KG M+MVIKL+++L  P+ V+Q VF   L+  +    V + +L I W+LL  
Sbjct: 40  MARSKALVKGKMRMVIKLFIVLSFPMEVVQLVFSRLLIQSTIIGIVGKLVLIIIWMLLIS 99

Query: 61  VFFLVKLVLETVVYFVCKLYHCENVDKLALWNHLQGYRSAHHYDQLKVDDEVQLEKLQVV 119
           +F LV LV +TV+YFVCK YH +  +KL++ +HLQ Y  A  YD LKV+D V+ E LQ+V
Sbjct: 100 LFLLVSLVAQTVLYFVCKSYHQKLAEKLSISDHLQRYLLA-DYDPLKVEDAVRTENLQIV 158

[Close]

BLAST of Cla003812 vs. NCBI nr
Match: gi|700192542|gb|KGN47746.1| (hypothetical protein Csa_6G399220 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 56/109 (51.38%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 12  MKMVIKLWMLLDLPLGVIQFVFLHYLVVRS--AWVDRGILGICWVLLFLVFFLVKLVLET 71
           M+MVIKL+ LL LP+ V+Q VF H+LV  +    V + +L I W+LL   F LV LV +T
Sbjct: 1   MRMVIKLFSLLSLPIEVVQLVFSHFLVQSTIVGIVGKLVLIIIWMLLLSFFLLVSLVAQT 60

Query: 72  VVYFVCKLYHCENVDKLALWNHLQGYRSAHHYDQLKVDDEVQLEKLQVV 119
           V+YFVCK YH E  +KL++ + LQ Y    HYD LKV+D+V  EKLQ+V
Sbjct: 61  VLYFVCKSYHQELAEKLSISDRLQRYLLT-HYDPLKVEDDVPTEKLQIV 108

The following BLAST results are available for this feature:

BLAST of Cla003812 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFW2_CUCSA	2.4e-42	73.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398210 PE=4 SV=1	[more]
A0A0A0KIZ1_CUCSA	1.1e-18	51.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399220 PE=4 SV=1	[more]
A0A0A0KDW0_CUCSA	2.4e-18	49.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G398200 PE=4 SV=1	[more]
A0A0A0KBZ8_CUCSA	1.3e-16	55.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020210 PE=4 SV=1	[more]
A0A067LG03_JATCU	1.6e-14	46.34	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25260 PE=4 SV=1	[more]

BLAST of Cla003812 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722278\|ref\|XP_011658450.1\|	3.5e-42	73.55	PREDICTED: uncharacterized protein LOC105436009 [Cucumis sativus]	[more]
gi\|700192540\|gb\|KGN47744.1\|	3.5e-42	73.55	hypothetical protein Csa_6G398210 [Cucumis sativus]	[more]
gi\|778722281\|ref\|XP_011658451.1\|	3.6e-23	53.33	PREDICTED: uncharacterized protein LOC105436010 [Cucumis sativus]	[more]
gi\|659133528\|ref\|XP_008466772.1\|	1.7e-20	49.17	PREDICTED: uncharacterized protein LOC103504102 [Cucumis melo]	[more]
gi\|700192542\|gb\|KGN47746.1\|	1.6e-18	51.38	hypothetical protein Csa_6G399220 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003812	Cla003812.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33133	FAMILY NOT NAMED	coord: 1..116 score: 2.4
None	No IPR available	PANTHER	PTHR33133:SF5	EXPRESSED PROTEIN	coord: 1..116 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003812	ClCG08G002810	Watermelon (Charleston Gray)	wcgwmB403

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003812	Melon (DHL92) v3.6.1	medwmB299
Cla003812	Cucumber (Chinese Long) v3	cucwmB501
Cla003812	Wax gourd	wgowmB306
Cla003812	Cucumber (Gy14) v1	cgywmB656
Cla003812	Wild cucumber (PI 183967)	cpiwmB490
Cla003812	Melon (DHL92) v3.5.1	mewmB305
Cla003812	Melon (DHL92) v3.5.1	mewmB312
Cla003812	Watermelon (Charleston Gray)	wcgwmB410
Cla003812	Cucumber (Chinese Long) v2	cuwmB475
Cla003812	Bottle gourd (USVL1VR-Ls)	lsiwmB470
Cla003812	Cucumber (Gy14) v2	cgybwmB446