Cla003811 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003811
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 11529072 .. 11529810 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACTGCGGGCATTTGTTTCCGTCAATTCAAATATGCTTTGACTACGAAGTATATAAGGCCATTTAAGGATGATCTGGAGAAATTAAAATGTCCCCCGATTGAGTATTCCCATATTGATCAAGAACAGCGGGATGTGTTTGTCAGTTTTCGGCTTAAGGAAGAGTTCCAAGTAAGTATTGTTGTTTGAAACATTCAGACTTTGTATTCACTTACATTGAAGATGCAAAGTATCAATATGACATTTTATTATGTAATTTTATTAAGGTGGTCAGTAGTAAGAACCGAGAAAAGAGGAAAAAGCATATGTATAATCATCAAATGTCACGGAAAGGGTATGCTAATCTTTCGGAAGAGTTGGTAAGATACTAATTCACTAGTATTTATTTTTTTATACGACCTATATATTACATTTGAATCCAAATTCATGTGTGATGGTTTGTTATTGGTGCAGAAGGAATCGTAACCAAATGAAGATCTAACTAAGCGATGCGTTTTATGGAAAAGGGCTCGGATGGATCGAGAGGGAAAAATTTCAGACAAGTAAACACAAGAAGTGGTGGATCGTATAGTAAGTATTTGTTGACTACCTATATTTCTTTGCATTATGCTTAAATATTGATTTTTTTTTTCAATAGGATGAAATGTTGGTCACTCATCATGTCAAAAGTGACAACACATCTACGGTGGAGATATCCTATCACAAGCGTTGGGGAGCAAAGATCCTCCAGGAGTAG

mRNA sequence

ATGCAAACTGCGGGCATTTGTTTCCGTCAATTCAAATATGCTTTGACTACGAAGTATATAAGGCCATTTAAGGATGATCTGGAGAAATTAAAATGTCCCCCGATTGAGTATTCCCATATTGATCAAGAACAGCGGGATGTGTTTGTCAGTTTTCGGCTTAAGGAAGAGTTCCAAGATGAAATGTTGGTCACTCATCATGTCAAAAGTGACAACACATCTACGGTGGAGATATCCTATCACAAGCGTTGGGGAGCAAAGATCCTCCAGGAGTAG

Coding sequence (CDS)

ATGCAAACTGCGGGCATTTGTTTCCGTCAATTCAAATATGCTTTGACTACGAAGTATATAAGGCCATTTAAGGATGATCTGGAGAAATTAAAATGTCCCCCGATTGAGTATTCCCATATTGATCAAGAACAGCGGGATGTGTTTGTCAGTTTTCGGCTTAAGGAAGAGTTCCAAGATGAAATGTTGGTCACTCATCATGTCAAAAGTGACAACACATCTACGGTGGAGATATCCTATCACAAGCGTTGGGGAGCAAAGATCCTCCAGGAGTAG

Protein sequence

MQTAGICFRQFKYALTTKYIRPFKDDLEKLKCPPIEYSHIDQEQRDVFVSFRLKEEFQDEMLVTHHVKSDNTSTVEISYHKRWGAKILQE

Homology

[Close]

BLAST of Cla003811 vs. TrEMBL
Match: A5BU47_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003642 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 1    MQTAGICFRQFKYALTTKYIRPFKDDLEKLKCPPIEYSHIDQEQRDVFVSFRLKEEFQD 60
            M T G CFR FK  LT K+I PFKD+ E LK PP EY  ID E  ++FV  RL E+FQ+
Sbjct: 1105 MLTVGKCFRSFKNTLTVKHILPFKDEPELLKKPPAEYHFIDDEDWNIFVKNRLSEKFQE 1163

[Close]

BLAST of Cla003811 vs. TrEMBL
Match: A5BMG6_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_036906 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-08
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 1   MQTAGICFRQFKYALTTKYIRPFKDDLEKLKCPPIEYSHIDQEQRDVFVSFRLKEEFQD 60
           M T G CFR FK  LT K+I PFKD+ E LK PP EY  ID E  ++FV  RL E+FQ+
Sbjct: 858 MLTLGKCFRSFKNTLTVKHILPFKDEPELLKKPPAEYHFIDDEDWNIFVKNRLSEKFQE 916

[Close]

BLAST of Cla003811 vs. TrEMBL
Match: A5AWV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018163 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 1


Query: 1   MQTAGICFRQFKYALTTKYIRPFKDDLEKLKCPPIEYSHIDQEQRDVFVSFRLKEEFQD 60
           M T G CFR FK  LT KY+ PFKD  E LK PPIEY  I+ E   +FV  RL + FQD
Sbjct: 891 MLTMGKCFRSFKNMLTVKYVIPFKDQPEVLKKPPIEYIFIEDEDWTIFVKERLSKRFQD 949

[Close]

BLAST of Cla003811 vs. TrEMBL
Match: A5BRR6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001546 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-08
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 1


Query: 1   MQTAGICFRQFKYALTTKYIRPFKDDLEKLKCPPIEYSHIDQEQRDVFVSFRLKEEFQD 60
           M T G CF+ FK  LT KY+ PFKD  E LK PPIEY  I+ E   +FV  RL + FQD
Sbjct: 504 MLTMGKCFQSFKNMLTVKYVIPFKDQPEVLKKPPIEYIFIEDEDWTIFVKERLSKRFQD 562

[Close]

BLAST of Cla003811 vs. TrEMBL
Match: A5BSS4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030496 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.6e-08
Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 1   MQTAGICFRQFKYALTTKYIRPFKDDLEKLKCPPIEYSHIDQEQRDVFVSFRLKEEFQD 60
           M T G CFR FK  LT K+I PFKD+ E LK  P EY  ID E  ++FV  RL E+FQ+
Sbjct: 902 MLTLGKCFRSFKNTLTVKHILPFKDEPELLKKXPAEYHFIDDEDWNIFVKNRLSEKFQE 960

[Close]

BLAST of Cla003811 vs. NCBI nr
Match: gi|147862302|emb|CAN79325.1| (hypothetical protein VITISV_003642 [Vitis vinifera])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 1    MQTAGICFRQFKYALTTKYIRPFKDDLEKLKCPPIEYSHIDQEQRDVFVSFRLKEEFQD 60
            M T G CFR FK  LT K+I PFKD+ E LK PP EY  ID E  ++FV  RL E+FQ+
Sbjct: 1105 MLTVGKCFRSFKNTLTVKHILPFKDEPELLKKPPAEYHFIDDEDWNIFVKNRLSEKFQE 1163

[Close]

BLAST of Cla003811 vs. NCBI nr
Match: gi|147839092|emb|CAN59766.1| (hypothetical protein VITISV_036906 [Vitis vinifera])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-08
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 1   MQTAGICFRQFKYALTTKYIRPFKDDLEKLKCPPIEYSHIDQEQRDVFVSFRLKEEFQD 60
           M T G CFR FK  LT K+I PFKD+ E LK PP EY  ID E  ++FV  RL E+FQ+
Sbjct: 858 MLTLGKCFRSFKNTLTVKHILPFKDEPELLKKPPAEYHFIDDEDWNIFVKNRLSEKFQE 916

[Close]

BLAST of Cla003811 vs. NCBI nr
Match: gi|778691681|ref|XP_011653325.1| (PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-08
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1


Query: 1   MQTAGICFRQFKYALTTKYIRPFKDDLEKLKCPPIEYSHIDQEQRDVFVSFRLKEEFQ 59
           +Q   ICF  FK  LTT Y+   KDD+E LK PP EYS ID++  D FV+ RLKE+F+
Sbjct: 81  LQNVRICFSGFKLRLTTTYVLSLKDDVENLKRPPAEYSFIDEDHWDEFVASRLKEDFE 138

[Close]

BLAST of Cla003811 vs. NCBI nr
Match: gi|147789833|emb|CAN73872.1| (hypothetical protein VITISV_018163 [Vitis vinifera])

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-08
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 1


Query: 1   MQTAGICFRQFKYALTTKYIRPFKDDLEKLKCPPIEYSHIDQEQRDVFVSFRLKEEFQD 60
           M T G CFR FK  LT KY+ PFKD  E LK PPIEY  I+ E   +FV  RL + FQD
Sbjct: 891 MLTMGKCFRSFKNMLTVKYVIPFKDQPEVLKKPPIEYIFIEDEDWTIFVKERLSKRFQD 949

[Close]

BLAST of Cla003811 vs. NCBI nr
Match: gi|731436976|ref|XP_010647406.1| (PREDICTED: uncharacterized protein LOC100854811, partial [Vitis vinifera])

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-08
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 1


Query: 1   MQTAGICFRQFKYALTTKYIRPFKDDLEKLKCPPIEYSHIDQEQRDVFVSFRLKEEFQD 60
           M T G CFR FK  LT KY+ PFKD  E LK PPIEY  I+ E   +FV  RL + FQD
Sbjct: 507 MLTMGKCFRSFKNMLTVKYVIPFKDQPEVLKKPPIEYIFIEDEDWTIFVKERLSKRFQD 565

The following BLAST results are available for this feature:

BLAST of Cla003811 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BU47_VITVI	7.8e-09	55.93	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003642 PE=4 SV=1	[more]
A5BMG6_VITVI	1.0e-08	55.93	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_036906 P...	[more]
A5AWV0_VITVI	2.3e-08	55.93	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018163 PE=4 SV=1	[more]
A5BRR6_VITVI	6.6e-08	54.24	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001546 PE=4 SV=1	[more]
A5BSS4_VITVI	8.6e-08	54.24	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030496 PE=4 SV=1	[more]

BLAST of Cla003811 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147862302\|emb\|CAN79325.1\|	1.1e-08	55.93	hypothetical protein VITISV_003642 [Vitis vinifera]	[more]
gi\|147839092\|emb\|CAN59766.1\|	1.5e-08	55.93	hypothetical protein VITISV_036906 [Vitis vinifera]	[more]
gi\|778691681\|ref\|XP_011653325.1\|	3.3e-08	53.45	PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus]	[more]
gi\|147789833\|emb\|CAN73872.1\|	3.3e-08	55.93	hypothetical protein VITISV_018163 [Vitis vinifera]	[more]
gi\|731436976\|ref\|XP_010647406.1\|	3.3e-08	55.93	PREDICTED: uncharacterized protein LOC100854811, partial [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003811	Cla003811.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003811	Melon (DHL92) v3.6.1	medwmB299
Cla003811	Cucumber (Chinese Long) v3	cucwmB501
Cla003811	Wax gourd	wgowmB306
Cla003811	Cucumber (Gy14) v1	cgywmB656
Cla003811	Wild cucumber (PI 183967)	cpiwmB490
Cla003811	Melon (DHL92) v3.5.1	mewmB305
Cla003811	Melon (DHL92) v3.5.1	mewmB312
Cla003811	Watermelon (Charleston Gray)	wcgwmB403
Cla003811	Watermelon (Charleston Gray)	wcgwmB410
Cla003811	Cucumber (Chinese Long) v2	cuwmB475
Cla003811	Bottle gourd (USVL1VR-Ls)	lsiwmB470
Cla003811	Cucumber (Gy14) v2	cgybwmB446