Cla003781 (gene) Watermelon (97103) v1

Overview
NameCla003781
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUncharacterized WD repeat-containing protein K04G11.4 (AHRD V1 **-- YZLL_CAEEL); contains Interpro domain(s) IPR017986 WD40 repeat, region
LocationChr8 : 10796327 .. 10796837 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTTCTGATTTTTGAAATCTTGAACTGCAGCTCCCCTTGGGCTGCAACTGGAGGAATGGATCAGAAGCTCATCATTTGGGATCTTCGACAATCAACACCACGCAGTACATGCGAGCACGAGGTCTATTAACTACTGATTTTTGTTTTTAAGTCCATAAAATAGTATTTAGTTTATCACTGATCTTCATAATCCTTCATTAGTGTTGACTGCAAGTAGATTTGACTTGTTGGGTTTGGCTTGTTTAAGGATAAACATACTTTCCTCACATTTTGGACAGGATGGAGTAACATGTCTTACTTGGATTGGCACATCGAGATACCTTGCAACTGGATGTGTTGATGGTCGAGTACGAATGTGGGATAGCCTCTCCGGAGAATGTGTTAGAACCTTCACCGGCCACTCCGATGCCATCCAATCTCTCGCGGTGTCTGCCAACAATGAGTACCTTGTTTCTGTTGCTCTTGATAATACAGCTCGGATTTTTGAGATTGCAGAGTATCATTGA

mRNA sequence

ATGAATGTTCTGATTTTTGAAATCTTGAACTGCAGCTCCCCTTGGGCTGCAACTGGAGGAATGGATCAGAAGCTCATCATTTGGGATCTTCGACAATCAACACCACGCAGTACATGCGAGCACGAGGATGGAGTAACATGTCTTACTTGGATTGGCACATCGAGATACCTTGCAACTGGATGTGTTGATGGTCGAGTACGAATGTGGGATAGCCTCTCCGGAGAATGTGTTAGAACCTTCACCGGCCACTCCGATGCCATCCAATCTCTCGCGGTGTCTGCCAACAATGAGTACCTTGTTTCTGTTGCTCTTGATAATACAGCTCGGATTTTTGAGATTGCAGAGTATCATTGA

Coding sequence (CDS)

ATGAATGTTCTGATTTTTGAAATCTTGAACTGCAGCTCCCCTTGGGCTGCAACTGGAGGAATGGATCAGAAGCTCATCATTTGGGATCTTCGACAATCAACACCACGCAGTACATGCGAGCACGAGGATGGAGTAACATGTCTTACTTGGATTGGCACATCGAGATACCTTGCAACTGGATGTGTTGATGGTCGAGTACGAATGTGGGATAGCCTCTCCGGAGAATGTGTTAGAACCTTCACCGGCCACTCCGATGCCATCCAATCTCTCGCGGTGTCTGCCAACAATGAGTACCTTGTTTCTGTTGCTCTTGATAATACAGCTCGGATTTTTGAGATTGCAGAGTATCATTGA

Protein sequence

MNVLIFEILNCSSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH
Homology
[Close]
BLAST of Cla003781 vs. Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-11
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWD-LRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWD 71
           +S + ATG  D+ + +WD L  +  R    H+  +  LT+    R+LATG  DGRV +WD
Sbjct: 639 NSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWD 698

Query: 72  SLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFE 113
              G  V    GH+D + SL  S + E L S ++DNT R+++
Sbjct: 699 IGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 740


HSP 2 Score: 68.9 bits (167), Expect = 4.1e-11
Identity = 37/97 (38.14%), Postives = 47/97 (48.45%), Query Frame = 1 

Query: 18  TGGMDQKLIIWDLRQSTP-RSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGEC 77
           +GG D+   +W      P R    H   V C  +   S Y+ATG  D  VR+WD L+G C
Sbjct: 603 SGGHDRVARLWATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNC 662

Query: 78  VRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEI 114
           VR FTGH   I SL  S N  +L + A D    +++I
Sbjct: 663 VRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDI 699

[Close]
BLAST of Cla003781 vs. Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-11
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWD-LRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWD 71
           +S + ATG  D+ + +WD L  +  R    H+  +  LT+    R+LATG  DGRV +WD
Sbjct: 638 NSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWD 697

Query: 72  SLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFE 113
              G  V    GH+D + SL  S + E L S ++DNT R+++
Sbjct: 698 IGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 739


HSP 2 Score: 68.6 bits (166), Expect = 5.3e-11
Identity = 37/97 (38.14%), Postives = 47/97 (48.45%), Query Frame = 1 

Query: 18  TGGMDQKLIIWDLRQSTP-RSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGEC 77
           +GG D+   +W      P R    H   V C  +   S Y+ATG  D  VR+WD L+G C
Sbjct: 602 SGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNC 661

Query: 78  VRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEI 114
           VR FTGH   I SL  S N  +L + A D    +++I
Sbjct: 662 VRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDI 698

[Close]
BLAST of Cla003781 vs. Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.3e-11
Identity = 37/103 (35.92%), Postives = 52/103 (50.49%), Query Frame = 1 

Query: 13  SPWAATGGMDQKLIIWDLRQSTP-RSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDS 72
           S + A+G  D+   +W   ++ P R    H   V C+ +   S YLATG  D  VR+W +
Sbjct: 396 SLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSA 455

Query: 73  LSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIA 115
             G  VR FTGH   + SLA S N +YL S   D   +++++A
Sbjct: 456 QQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLA 498


HSP 2 Score: 62.4 bits (150), Expect = 3.8e-09
Identity = 32/103 (31.07%), Postives = 55/103 (53.40%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWDLRQ-STPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWD 71
           +S + ATG  D+ + +W  +Q ++ R    H   V  L +    +YLA+   D R+++WD
Sbjct: 437 NSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWD 496

Query: 72  SLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEI 114
             SG   +   GH+D I SL  S ++  + S ++DN+ R+++I
Sbjct: 497 LASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDI 539

[Close]
BLAST of Cla003781 vs. Swiss-Prot
Match: TAF5_ARATH (Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana GN=TAF5 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-11
Identity = 34/94 (36.17%), Postives = 48/94 (51.06%), Query Frame = 1 

Query: 22  DQKLIIWDLRQSTP-RSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGECVRTF 81
           D+   IW + +  P R    H   V C+ W     Y+ATG  D  VR+WD  +GECVR F
Sbjct: 481 DRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIF 540

Query: 82  TGHSDAIQSLAVSANNEYLVSVALDNTARIFEIA 115
            GH   + SLA+S +  Y+ S   D T  +++++
Sbjct: 541 IGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLS 574


HSP 2 Score: 58.9 bits (141), Expect = 4.2e-08
Identity = 31/105 (29.52%), Postives = 50/105 (47.62%), Query Frame = 1 

Query: 10  NCSSPWAATGGMDQKLIIWDLRQST-PRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRM 69
           NC+  + ATG  D+ + +WD++     R    H   V  L      RY+A+G  DG + M
Sbjct: 513 NCN--YIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMM 572

Query: 70  WDSLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEI 114
           WD  +  C+    GH+  + SL+ S     L S + D T +++++
Sbjct: 573 WDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDV 615

[Close]
BLAST of Cla003781 vs. Swiss-Prot
Match: SNR40_PONAB (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 29/99 (29.29%), Postives = 55/99 (55.56%), Query Frame = 1 

Query: 18  TGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGECV 77
           TG  D  + +WD+R+     T ++   V  +T+  TS  + +G +D  +++WD    +  
Sbjct: 169 TGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLT 228

Query: 78  RTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEY 117
            T  GH+D++  L++S+   YL+S A+DNT R++++  +
Sbjct: 229 YTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPF 267


HSP 2 Score: 47.0 bits (110), Expect = 1.7e-04
Identity = 27/79 (34.18%), Postives = 39/79 (49.37%), Query Frame = 1 

Query: 10  NCSSPWAATGGMDQKLIIWDLRQSTPRSTCE-HEDGVTCLTWIGTSRYLATGCVDGRVRM 69
           N +S    +GG+D  + +WDLRQ+    T   H D VT L+      YL +  +D  VR+
Sbjct: 202 NDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRV 261

Query: 70  WD----SLSGECVRTFTGH 84
           WD    +    CV+ F G+
Sbjct: 262 WDVRPFAPKERCVKIFQGN 280

[Close]
BLAST of Cla003781 vs. TrEMBL
Match: A0A0A0KBX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016980 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 7.4e-52
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDS 71
           SSPWAATGGMDQKLIIWDL+QSTPRSTC+HEDGVTCLTWIGTSRYLATGCVDGRVR+WDS
Sbjct: 392 SSPWAATGGMDQKLIIWDLQQSTPRSTCQHEDGVTCLTWIGTSRYLATGCVDGRVRIWDS 451

Query: 72  LSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH 118
           LSGECV+TF+GHSDAIQSLAV AN EYLVSVALDNTARIFEIAEYH
Sbjct: 452 LSGECVKTFSGHSDAIQSLAVCANLEYLVSVALDNTARIFEIAEYH 497

[Close]
BLAST of Cla003781 vs. TrEMBL
Match: A0A0A0KBX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016980 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.4e-02
Identity = 27/93 (29.03%), Postives = 46/93 (49.46%), Query Frame = 1 

Query: 17  ATGGMDQKLIIWDL-RQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGE 76
           ATGG D K  +W + R    +    H+D V+ L +    + LA+G  DG +++WD+ SG 
Sbjct: 184 ATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGIIQIWDTSSGN 243

Query: 77  CVRTFTGHSDAIQSLAVSANNEYLVSVALDNTA 109
              T  G    I+ +        +++ + D+TA
Sbjct: 244 LKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTA 276


HSP 2 Score: 181.8 bits (460), Expect = 4.8e-43
Identity = 80/108 (74.07%), Postives = 97/108 (89.81%), Query Frame = 1 

Query: 10  NCSSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMW 69
           + S+PWAATGGMD KLIIWDL+QS PRSTCEH DGVTCL+W+G  RY+ATGCVDG+VR+W
Sbjct: 290 SASAPWAATGGMDNKLIIWDLQQSLPRSTCEHPDGVTCLSWLGQYRYVATGCVDGKVRVW 349

Query: 70  DSLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH 118
           DS SGECVRTF+GH+DAIQ LA S+N EYLVSV++D T+R+FEIAE++
Sbjct: 350 DSRSGECVRTFSGHADAIQCLAASSNGEYLVSVSIDETSRVFEIAEFN 397

[Close]
BLAST of Cla003781 vs. TrEMBL
Match: K4CC05_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 42.7 bits (99), Expect = 3.5e-01
Identity = 23/72 (31.94%), Postives = 35/72 (48.61%), Query Frame = 1 

Query: 18  TGGMDQKLIIWDLRQSTPRSTCE-HEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGEC 77
           TGG D +  +W + Q       + H D V+ L +    + LA+G +DG +R+WD  SG  
Sbjct: 85  TGGGDDRGFMWKIGQGDFAFELQGHTDSVSSLAFSSDGQLLASGSLDGNIRVWDITSGGL 144

Query: 78  VRTFTGHSDAIQ 89
             T  G    I+
Sbjct: 145 KGTLEGPEKGIE 156


HSP 2 Score: 40.4 bits (93), Expect = 1.7e+00
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 1 

Query: 57  LATGCVDGRVRMWDSLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEI 114
           + TG  D R  MW    G+      GH+D++ SLA S++ + L S +LD   R+++I
Sbjct: 83  VVTGGGDDRGFMWKIGQGDFAFELQGHTDSVSSLAFSSDGQLLASGSLDGNIRVWDI 139


HSP 3 Score: 181.4 bits (459), Expect = 6.3e-43
Identity = 78/105 (74.29%), Postives = 97/105 (92.38%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDS 71
           SSPWAATGG+DQKLIIWDL+ S PR+TCEH+DGVTC+ W+G SRY+ATGCVDG+VR+WDS
Sbjct: 285 SSPWAATGGLDQKLIIWDLQHSLPRATCEHQDGVTCVAWLGASRYVATGCVDGKVRLWDS 344

Query: 72  LSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEY 117
           LSG+C+RTF+GH+DAIQSL++SAN +YLVS + D TAR+FEIAE+
Sbjct: 345 LSGDCIRTFSGHADAIQSLSLSANQDYLVSGSSDGTARVFEIAEF 389

[Close]
BLAST of Cla003781 vs. TrEMBL
Match: B9IQM6_POPTR (Transducin family protein OS=Populus trichocarpa GN=POPTR_0019s11710g PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.1e-02
Identity = 25/73 (34.25%), Postives = 38/73 (52.05%), Query Frame = 1 

Query: 17  ATGGMDQKLIIWDLRQSTPRSTCE-HEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGE 76
           ATGG D K  +W +      S  + H+D V+CL +    + LA+G  DG V++WD+ SG 
Sbjct: 77  ATGGGDDKGFLWKIGLGDWASELKGHKDSVSCLAFSSDGQLLASGGFDGLVQIWDASSGN 136

Query: 77  CVRTFTGHSDAIQ 89
                 G  + I+
Sbjct: 137 HKCVLEGPDEGIE 149


HSP 2 Score: 180.3 bits (456), Expect = 1.4e-42
Identity = 78/105 (74.29%), Postives = 97/105 (92.38%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDS 71
           SSPWAATG MDQKLIIWDL+ S PRSTC+HEDGVTCL W+GTS+Y+ TGCVDG+VR+WDS
Sbjct: 271 SSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 330

Query: 72  LSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEY 117
           LSG+CVRTF+GH DAIQ+++VSA+ ++LVSV+LD TAR+FEIA++
Sbjct: 331 LSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 375

[Close]
BLAST of Cla003781 vs. TrEMBL
Match: V4UPM0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008663mg PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.1e-02
Identity = 27/92 (29.35%), Postives = 46/92 (50.00%), Query Frame = 1 

Query: 17  ATGGMDQKLIIWDLRQSTPRSTCE-HEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGE 76
           ATGG D K   W + Q    S  + H+D V+ L +    + LA+G +DG V++WD  SG 
Sbjct: 63  ATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 122

Query: 77  CVRTFTGHSDAIQSLAVSANNEYLVSVALDNT 108
              T  G    ++ ++       +++ + D+T
Sbjct: 123 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 154


HSP 2 Score: 180.3 bits (456), Expect = 1.4e-42
Identity = 78/105 (74.29%), Postives = 97/105 (92.38%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDS 71
           SSPWAATG MDQKLIIWDL+ S PRSTC+HEDGVTCL W+GTS+Y+ TGCVDG+VR+WDS
Sbjct: 256 SSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 315

Query: 72  LSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEY 117
           LSG+CVRTF+GH DAIQ+++VSA+ ++LVSV+LD TAR+FEIA++
Sbjct: 316 LSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 360

[Close]
BLAST of Cla003781 vs. NCBI nr
Match: gi|659126213|ref|XP_008463068.1| (PREDICTED: angio-associated migratory cell protein isoform X2 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-52
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDS 71
           SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVR+WDS
Sbjct: 259 SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRIWDS 318

Query: 72  LSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH 118
           LSGECV+TF+GHSDAIQSLAV AN EYLVSVALDNTARIFEIAEYH
Sbjct: 319 LSGECVKTFSGHSDAIQSLAVCANLEYLVSVALDNTARIFEIAEYH 364

[Close]
BLAST of Cla003781 vs. NCBI nr
Match: gi|659126213|ref|XP_008463068.1| (PREDICTED: angio-associated migratory cell protein isoform X2 [Cucumis melo])

HSP 1 Score: 46.6 bits (109), Expect = 3.5e-02
Identity = 27/93 (29.03%), Postives = 46/93 (49.46%), Query Frame = 1 

Query: 17  ATGGMDQKLIIWDL-RQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGE 76
           ATGG D K  +W + R    +    H+D V+ L +    + LA+G  DG +++WD+ SG 
Sbjct: 79  ATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGIIQIWDTSSGN 138

Query: 77  CVRTFTGHSDAIQSLAVSANNEYLVSVALDNTA 109
              T  G    I+ +        +++ + D+TA
Sbjct: 139 LKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTA 171


HSP 2 Score: 213.8 bits (543), Expect = 1.6e-52
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDS 71
           SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVR+WDS
Sbjct: 287 SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRIWDS 346

Query: 72  LSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH 118
           LSGECV+TF+GHSDAIQSLAV AN EYLVSVALDNTARIFEIAEYH
Sbjct: 347 LSGECVKTFSGHSDAIQSLAVCANLEYLVSVALDNTARIFEIAEYH 392

[Close]
BLAST of Cla003781 vs. NCBI nr
Match: gi|659126209|ref|XP_008463066.1| (PREDICTED: angio-associated migratory cell protein isoform X1 [Cucumis melo])

HSP 1 Score: 46.6 bits (109), Expect = 3.5e-02
Identity = 27/93 (29.03%), Postives = 46/93 (49.46%), Query Frame = 1 

Query: 17  ATGGMDQKLIIWDL-RQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGE 76
           ATGG D K  +W + R    +    H+D V+ L +    + LA+G  DG +++WD+ SG 
Sbjct: 79  ATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGIIQIWDTSSGN 138

Query: 77  CVRTFTGHSDAIQSLAVSANNEYLVSVALDNTA 109
              T  G    I+ +        +++ + D+TA
Sbjct: 139 LKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTA 171


HSP 2 Score: 211.1 bits (536), Expect = 1.1e-51
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDS 71
           SSPWAATGGMDQKLIIWDL+QSTPRSTC+HEDGVTCLTWIGTSRYLATGCVDGRVR+WDS
Sbjct: 287 SSPWAATGGMDQKLIIWDLQQSTPRSTCQHEDGVTCLTWIGTSRYLATGCVDGRVRIWDS 346

Query: 72  LSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH 118
           LSGECV+TF+GHSDAIQSLAV AN EYLVSVALDNTARIFEIAEYH
Sbjct: 347 LSGECVKTFSGHSDAIQSLAVCANLEYLVSVALDNTARIFEIAEYH 392

[Close]
BLAST of Cla003781 vs. NCBI nr
Match: gi|449441201|ref|XP_004138371.1| (PREDICTED: angio-associated migratory cell protein [Cucumis sativus])

HSP 1 Score: 46.6 bits (109), Expect = 3.5e-02
Identity = 27/93 (29.03%), Postives = 46/93 (49.46%), Query Frame = 1 

Query: 17  ATGGMDQKLIIWDL-RQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGE 76
           ATGG D K  +W + R    +    H+D V+ L +    + LA+G  DG +++WD+ SG 
Sbjct: 79  ATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGIIQIWDTSSGN 138

Query: 77  CVRTFTGHSDAIQSLAVSANNEYLVSVALDNTA 109
              T  G    I+ +        +++ + D+TA
Sbjct: 139 LKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTA 171


HSP 2 Score: 211.1 bits (536), Expect = 1.1e-51
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDS 71
           SSPWAATGGMDQKLIIWDL+QSTPRSTC+HEDGVTCLTWIGTSRYLATGCVDGRVR+WDS
Sbjct: 392 SSPWAATGGMDQKLIIWDLQQSTPRSTCQHEDGVTCLTWIGTSRYLATGCVDGRVRIWDS 451

Query: 72  LSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH 118
           LSGECV+TF+GHSDAIQSLAV AN EYLVSVALDNTARIFEIAEYH
Sbjct: 452 LSGECVKTFSGHSDAIQSLAVCANLEYLVSVALDNTARIFEIAEYH 497

[Close]
BLAST of Cla003781 vs. NCBI nr
Match: gi|700190678|gb|KGN45882.1| (hypothetical protein Csa_6G016980 [Cucumis sativus])

HSP 1 Score: 46.6 bits (109), Expect = 3.5e-02
Identity = 27/93 (29.03%), Postives = 46/93 (49.46%), Query Frame = 1 

Query: 17  ATGGMDQKLIIWDL-RQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGE 76
           ATGG D K  +W + R    +    H+D V+ L +    + LA+G  DG +++WD+ SG 
Sbjct: 184 ATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGIIQIWDTSSGN 243

Query: 77  CVRTFTGHSDAIQSLAVSANNEYLVSVALDNTA 109
              T  G    I+ +        +++ + D+TA
Sbjct: 244 LKCTLEGPGGGIEWVRWHPRGHLVLAGSEDSTA 276


HSP 2 Score: 188.3 bits (477), Expect = 7.4e-45
Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = 1 

Query: 12  SSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDS 71
           SSPWAATGGMDQKLIIWDL+ S PRSTC+HEDGVTCLTW+G SR+LATGCVDG+VR+WDS
Sbjct: 290 SSPWAATGGMDQKLIIWDLQHSLPRSTCDHEDGVTCLTWLGGSRFLATGCVDGKVRLWDS 349

Query: 72  LSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEY 117
           LSG+CVRTF+GHSDAIQSL+ SAN + LVSV+LD TAR+FEI EY
Sbjct: 350 LSGDCVRTFSGHSDAIQSLSASANGDSLVSVSLDGTARVFEIGEY 394

The following BLAST results are available for this feature:
BLAST of Cla003781 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TAF5_MOUSE1.8e-1137.25Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=1 SV=... [more]
TAF5_HUMAN1.8e-1137.25Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=... [more]
TAF5L_HUMAN5.3e-1135.92TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa ... [more]
TAF5_ARATH9.1e-1136.17Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana GN=TAF5 ... [more]
SNR40_PONAB1.2e-1029.29U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii GN=SNRNP40 PE=... [more]
BLAST of Cla003781 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBX7_CUCSA7.4e-5293.40Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016980 PE=4 SV=1[more]
A0A0A0KBX7_CUCSA2.4e-0229.03Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016980 PE=4 SV=1[more]
K4CC05_SOLLC3.5e-0131.94Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
B9IQM6_POPTR4.1e-0234.25Transducin family protein OS=Populus trichocarpa GN=POPTR_0019s11710g PE=4 SV=1[more]
V4UPM0_9ROSI4.1e-0229.35Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008663mg PE=4 SV=1[more]
BLAST of Cla003781 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126213|ref|XP_008463068.1|1.6e-5295.28PREDICTED: angio-associated migratory cell protein isoform X2 [Cucumis melo][more]
gi|659126213|ref|XP_008463068.1|3.5e-0229.03PREDICTED: angio-associated migratory cell protein isoform X2 [Cucumis melo][more]
gi|659126209|ref|XP_008463066.1|3.5e-0229.03PREDICTED: angio-associated migratory cell protein isoform X1 [Cucumis melo][more]
gi|449441201|ref|XP_004138371.1|3.5e-0229.03PREDICTED: angio-associated migratory cell protein [Cucumis sativus][more]
gi|700190678|gb|KGN45882.1|3.5e-0229.03hypothetical protein Csa_6G016980 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR024977Apc4_WD40_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005829 cytosol
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU43371watermelon EST collection version 2.0transcribed_cluster
WMU44883watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003781Cla003781.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU43371WMU43371transcribed_cluster
WMU44883WMU44883transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 32..70
score: 8.2E-9coord: 73..112
score: 3.
IPR001680WD40 repeatPROFILEPS50082WD_REPEATS_2coord: 80..117
score: 11.344coord: 38..79
score: 13
IPR015943WD40/YVTN repeat-like-containing domainGENE3DG3DSA:2.130.10.10coord: 13..114
score: 7.4
IPR017986WD40-repeat-containing domainPROFILEPS50294WD_REPEATS_REGIONcoord: 38..117
score: 20
IPR017986WD40-repeat-containing domainunknownSSF50978WD40 repeat-likecoord: 12..113
score: 5.31
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 16..30
score: -coord: 57..71
scor
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 27..90
score: 4.
NoneNo IPR availablePANTHERPTHR19857FAMILY NOT NAMEDcoord: 12..115
score: 1.3