Cla003772 (gene) Watermelon (97103) v1

NameCla003772
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 14415257 .. 14415580 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTAATTGGCCCGAGAATCACGCAATCAGGCGAGATGGATATAGTGTCAATCTCGCCACCAATCAAGCAGATTTGCCATTAACTGCGATTGTATCAGCTATAAAAGGGCAGCTCTGCGAGATGAGAAAGGTTGTTGATTCTCGGAAGAACTCCATAAGTGACAGCAGAGTTCTCTCAGACTTCAGCCGAAGACAAATAGCTCGAGAGAGAAGAGTCTTCCCTCTGCCGCACCACTTCACAGCAGAGCCTTACGCTTCCATCCGGATGACTCAAGACATTGACGCCTCCCCTGCTTTCATTCTTATTGTTCTATCTTAA

mRNA sequence

ATGGATCTTAATTGGCCCGAGAATCACGCAATCAGGCGAGATGGATATAGTGTCAATCTCGCCACCAATCAAGCAGATTTGCCATTAACTGCGATTGTATCAGCTATAAAAGGGCAGCTCTGCGAGATGAGAAAGGTTGTTGATTCTCGGAAGAACTCCATAAGTGACAGCAGAGTTCTCTCAGACTTCAGCCGAAGACAAATAGCTCGAGAGAGAAGAGTCTTCCCTCTGCCGCACCACTTCACAGCAGAGCCTTACGCTTCCATCCGGATGACTCAAGACATTGACGCCTCCCCTGCTTTCATTCTTATTGTTCTATCTTAA

Coding sequence (CDS)

ATGGATCTTAATTGGCCCGAGAATCACGCAATCAGGCGAGATGGATATAGTGTCAATCTCGCCACCAATCAAGCAGATTTGCCATTAACTGCGATTGTATCAGCTATAAAAGGGCAGCTCTGCGAGATGAGAAAGGTTGTTGATTCTCGGAAGAACTCCATAAGTGACAGCAGAGTTCTCTCAGACTTCAGCCGAAGACAAATAGCTCGAGAGAGAAGAGTCTTCCCTCTGCCGCACCACTTCACAGCAGAGCCTTACGCTTCCATCCGGATGACTCAAGACATTGACGCCTCCCCTGCTTTCATTCTTATTGTTCTATCTTAA

Protein sequence

MDLNWPENHAIRRDGYSVNLATNQADLPLTAIVSAIKGQLCEMRKVVDSRKNSISDSRVLSDFSRRQIARERRVFPLPHHFTAEPYASIRMTQDIDASPAFILIVLS
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013518Potassium channel, inwardly rectifying, Kir, cytoplasmic
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003772Cla003772.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013518Potassium channel, inwardly rectifying, Kir, cytoplasmicGENE3DG3DSA:2.60.40.1400coord: 31..79
score: 8.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003772Watermelon (97103) v2wmwmbB406
Cla003772Wax gourdwgowmB680
Cla003772Cucurbita maxima (Rimu)cmawmB073
Cla003772Cucurbita moschata (Rifu)cmowmB065
Cla003772Watermelon (Charleston Gray)wcgwmB344
Cla003772Bottle gourd (USVL1VR-Ls)lsiwmB419