Cla003765 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003765
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 14276965 .. 14277846 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACGCCTACAGAAGCCGAAATAAATAACGCCCTCACAACCATCGCCAAACCGGGCTCAAAGTGGAACACTTCCCCAAAGGGCATTCAGACTTGGGCGCCAACTTGCTTGATCGCCGAGGCCAACCTATGGCTTTACTTCATCAAGCGGTCGCTAATCCCCACAACGCATGACGCCTCAATATCAAGGGATCATGTCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTGTTTTTCAAGCCAAGGGGTCAGCTATTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAATTCATGGAGGATGCGCCAGTCAGAGCAGTAAATGGGGTCTTTTCAACCCTAAGTCTGAGACGGATATTAAAGGACTCCCCACATCTGCTTGAGGCGGCCAACACAAAGAAAAGGCCGACCAAGCCACAAGAACCATCATCCCCCCAACCTTCTCAACCCAAGAAGAGGAAACTTGTCAAGAAGATATTTGAGATGAAGGCGTCGAGTTCACAACCTAGTGAAGCCGAAGAAGCTGTTCAGCTCGACACTAACACACAAGTCTTGACCATGTATACTCCTCTCATCAACCCAATCATTGAGAAGCCCTCTTCACCGTCAACTTCCCTATCCCCTTCCCCTAAAATCCAAAAAGAACCACTTCCTGTACCTACCACCCAACGCGGCCTCCCATCGCCTCTTCAGCTTCCTATCGCAGACTTAAATGAGGAAGTGTCGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCTTCCGAGAGGCAACTTCGCCCCCCCCACCACCACCCGTTGAGCCGACCCTGA

mRNA sequence

ATGTCGACGCCTACAGAAGCCGAAATAAATAACGCCCTCACAACCATCGCCAAACCGGGCTCAAAGTGGAACACTTCCCCAAAGGGCATTCAGACTTGGGCGCCAACTTGCTTGATCGCCGAGGCCAACCTATGGCTTTACTTCATCAAGCGGTCGCTAATCCCCACAACGCATGACGCCTCAATATCAAGGGATCATGTCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTGTTTTTCAAGCCAAGGGGTCAGCTATTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAATTCATGGAGGATGCGCCAGTCAGAGCAGTAAATGGGGTCTTTTCAACCCTAAGTCTGAGACGGATATTAAAGGACTCCCCACATCTGCTTGAGGCGGCCAACACAAAGAAAAGGCCGACCAAGCCACAAGAACCATCATCCCCCCAACCTTCTCAACCCAAGAAGAGGAAACTTGTCAAGAAGATATTTGAGATGAAGGCGTCGAGTTCACAACCTAGTGAAGCCGAAGAAGCTGTTCAGCTCGACACTAACACACAAGTCTTGACCATGTATACTCCTCTCATCAACCCAATCATTGAGAAGCCCTCTTCACCGTCAACTTCCCTATCCCCTTCCCCTAAAATCCAAAAAGAACCACTTCCTGTACCTACCACCCAACGCGGCCTCCCATCGCCTCTTCAGCTTCCTATCGCAGACTTAAATGAGGAAGTGTCGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCTTCCGAGAGGCAACTTCGCCCCCCCCACCACCACCCGTTGAGCCGACCCTGA

Coding sequence (CDS)

ATGTCGACGCCTACAGAAGCCGAAATAAATAACGCCCTCACAACCATCGCCAAACCGGGCTCAAAGTGGAACACTTCCCCAAAGGGCATTCAGACTTGGGCGCCAACTTGCTTGATCGCCGAGGCCAACCTATGGCTTTACTTCATCAAGCGGTCGCTAATCCCCACAACGCATGACGCCTCAATATCAAGGGATCATGTCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAGACGTGGGACGCATCATTGCCCCACAGATTCGGGGGTTGTTTTTCAAGCCAAGGGGTCAGCTATTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAATTCATGGAGGATGCGCCAGTCAGAGCAGTAAATGGGGTCTTTTCAACCCTAAGTCTGAGACGGATATTAAAGGACTCCCCACATCTGCTTGAGGCGGCCAACACAAAGAAAAGGCCGACCAAGCCACAAGAACCATCATCCCCCCAACCTTCTCAACCCAAGAAGAGGAAACTTGTCAAGAAGATATTTGAGATGAAGGCGTCGAGTTCACAACCTAGTGAAGCCGAAGAAGCTGTTCAGCTCGACACTAACACACAAGTCTTGACCATGTATACTCCTCTCATCAACCCAATCATTGAGAAGCCCTCTTCACCGTCAACTTCCCTATCCCCTTCCCCTAAAATCCAAAAAGAACCACTTCCTGTACCTACCACCCAACGCGGCCTCCCATCGCCTCTTCAGCTTCCTATCGCAGACTTAAATGAGGAAGTGTCGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCTTCCGAGAGGCAACTTCGCCCCCCCCACCACCACCCGTTGAGCCGACCCTGA

Protein sequence

MSTPTEAEINNALTTIAKPGSKWNTSPKGIQTWAPTCLIAEANLWLYFIKRSLIPTTHDASISRDHVMVIYCIMRGIRLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRLCANAEFMEDAPVRAVNGVFSTLSLRRILKDSPHLLEAANTKKRPTKPQEPSSPQPSQPKKRKLVKKIFEMKASSSQPSEAEEAVQLDTNTQVLTMYTPLINPIIEKPSSPSTSLSPSPKIQKEPLPVPTTQRGLPSPLQLPIADLNEEVSPXXXXXXXXXXXXXXXLPSERQLRPPHHHPLSRP

Homology

[Close]

BLAST of Cla003765 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.8e-12
Identity = 47/158 (29.75%), Postives = 79/158 (50.00%), Query Frame = 1


Query: 6   EAEINNALTTIAKPGSKWNTSPKGIQTWAPTCLIAEANLWLYFIKRSLIPTTHDASISRD 65
           E ++   L TIA  G++W  S KG  T     L   A +W +F+   L+ +TH  +ISR+
Sbjct: 154 EEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRN 213

Query: 66  HVMVIYCIMRGIRLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRLCANAEFMEDA--PVRA 125
             +++Y ++ G  ++VGR+I  QIR    K +G L+FP L++ LC  +    +A  P   
Sbjct: 214 RAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEASEPRLR 273

Query: 126 VNGVFSTLSLRRILKDSPHLLEAANTKKRPTKPQEPSS 162
             G    +++ RI        E    ++   +P  PS+
Sbjct: 274 NTGAMDLVAITRISSGRSEKSEKGEEEEEQDEPSRPST 311

[Close]

BLAST of Cla003765 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 43/138 (31.16%), Postives = 75/138 (54.35%), Query Frame = 1


Query: 2   STPTEAEINNALTTIAKPGSKWNTSPKGIQTWAPTCLIAEANLWLYFIKRSLIPTTHDAS 61
           S  T+ ++   L  +A  G+ W  SP+G  T     L   A +W +F+    +P+TH  +
Sbjct: 78  SEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKT 137

Query: 62  ISRDHVMVIYCIMRGIRLDVGRIIAPQIRGL-FFKPRGQLFFPFLVTRLC--ANAEFMED 121
           +++D V+++Y I+ GI +++  I   +I+     + RG L+FP L+T+L   AN  + +D
Sbjct: 138 VAKDRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKD 197

Query: 122 APVRAVNGVFSTLSLRRI 137
             +    G  STLS+ RI
Sbjct: 198 EAIVHNAGAISTLSISRI 215

[Close]

BLAST of Cla003765 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 48/160 (30.00%), Postives = 84/160 (52.50%), Query Frame = 1


Query: 44  LWLYFIKRSLIPTTHDASISRDHVMVIYCIMRGIRLDVGRIIAPQIRGLFFKPRGQLFFP 103
           +WL  IK+ ++PT H ++IS + VM++YCIM+ I +++G+II+  I  L   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 104 FLVTRLCANAEFM-EDAP-VRAVNGVFSTLSLRRIL-----KDSPHLLEAAN----TKKR 163
           +L+ +LC  A  M E  P V   +G++   +L RI+     K     L+        K+ 
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEGCKVVKEI 147

Query: 164 PTKPQEPSSPQPSQPKKRKLVKKIFEMKASSSQPSEAEEA 193
                E    + + P+KRK   K  ++ +  ++ S+ E++
Sbjct: 148 DDDDVEEEDKKDNIPQKRKRQDKEDDLGSKKAKSSKIEDS 187

[Close]

BLAST of Cla003765 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-06
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 1  MSTPTEAEINNALTTIAKPGSKWNTSPKGIQTWAPTCLIAEANLWLYFIKRSLIPTTHDA 60
          +  P   ++ +AL  +  P +  + +P G     P  L  EA +WL F+K+ ++PT HD 
Sbjct: 10 LKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAIIWLVFVKKKIMPTRHDN 69

Query: 61 SISRDHVMVIYCIMRGIRLDV 82
          +IS + VM++YCIM+ I ++V
Sbjct: 70 NISMERVMLVYCIMKEILVEV 90

[Close]

BLAST of Cla003765 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 80.5 bits (197), Expect = 5.4e-12
Identity = 47/158 (29.75%), Postives = 79/158 (50.00%), Query Frame = 1


Query: 6   EAEINNALTTIAKPGSKWNTSPKGIQTWAPTCLIAEANLWLYFIKRSLIPTTHDASISRD 65
           E ++   L TIA  G++W  S KG  T     L   A +W +F+   L+ +TH  +ISR+
Sbjct: 154 EEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRN 213

Query: 66  HVMVIYCIMRGIRLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRLCANAEFMEDA--PVRA 125
             +++Y ++ G  ++VGR+I  QIR    K +G L+FP L++ LC  +    +A  P   
Sbjct: 214 RAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEASEPRLR 273

Query: 126 VNGVFSTLSLRRILKDSPHLLEAANTKKRPTKPQEPSS 162
             G    +++ RI        E    ++   +P  PS+
Sbjct: 274 NTGAMDLVAITRISSGRSEKSEKGEEEEEQDEPSRPST 311

[Close]

BLAST of Cla003765 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 43/138 (31.16%), Postives = 75/138 (54.35%), Query Frame = 1


Query: 2   STPTEAEINNALTTIAKPGSKWNTSPKGIQTWAPTCLIAEANLWLYFIKRSLIPTTHDAS 61
           S  T+ ++   L  +A  G+ W  SP+G  T     L   A +W +F+    +P+TH  +
Sbjct: 78  SEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKT 137

Query: 62  ISRDHVMVIYCIMRGIRLDVGRIIAPQIRGL-FFKPRGQLFFPFLVTRLC--ANAEFMED 121
           +++D V+++Y I+ GI +++  I   +I+     + RG L+FP L+T+L   AN  + +D
Sbjct: 138 VAKDRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKD 197

Query: 122 APVRAVNGVFSTLSLRRI 137
             +    G  STLS+ RI
Sbjct: 198 EAIVHNAGAISTLSISRI 215

[Close]

BLAST of Cla003765 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-09
Identity = 48/160 (30.00%), Postives = 84/160 (52.50%), Query Frame = 1


Query: 44  LWLYFIKRSLIPTTHDASISRDHVMVIYCIMRGIRLDVGRIIAPQIRGLFFKPRGQLFFP 103
           +WL  IK+ ++PT H ++IS + VM++YCIM+ I +++G+II+  I  L   PRG   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 104 FLVTRLCANAEFM-EDAP-VRAVNGVFSTLSLRRIL-----KDSPHLLEAAN----TKKR 163
           +L+ +LC  A  M E  P V   +G++   +L RI+     K     L+        K+ 
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEGCKVVKEI 147

Query: 164 PTKPQEPSSPQPSQPKKRKLVKKIFEMKASSSQPSEAEEA 193
                E    + + P+KRK   K  ++ +  ++ S+ E++
Sbjct: 148 DDDDVEEEDKKDNIPQKRKRQDKEDDLGSKKAKSSKIEDS 187

[Close]

BLAST of Cla003765 vs. NCBI nr
Match: gi|502170179|ref|XP_004514776.1| (PREDICTED: uncharacterized protein LOC101493401 isoform X3 [Cicer arietinum])

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 37/129 (28.68%), Postives = 69/129 (53.49%), Query Frame = 1


Query: 2   STPTEAEINNALTTIAKPGSKWNTSPKGIQTWAPTCLIAEA--NLWLYFIKRSLIPTTHD 61
           +T ++ ++N+ + T+   G+ W T  KG   W    L  +A   +W   I   L+P ++ 
Sbjct: 193 NTVSDEKLNSIMKTLTVRGTNWKTE-KGKNVWKIPFLALKAIPKVWYRLICTKLLPNSNF 252

Query: 62  ASISRDHVMVIYCIMRGIRLDVGRIIAPQIRGLFF--KPRGQLFFPFLVTRLCA-NAEFM 121
            S+ +D ++++YC++ G  ++VG+II  +I    F  K + +L FP L++ LC  N   +
Sbjct: 253 QSVDKDRLLLLYCVVEGFSINVGKIIYDEIIACAFKKKKKERLLFPSLISDLCVRNGVRV 312

Query: 122 EDAPVRAVN 126
           ED     +N
Sbjct: 313 EDDDEVVIN 320

[Close]

BLAST of Cla003765 vs. NCBI nr
Match: gi|828335831|ref|XP_012575515.1| (PREDICTED: uncharacterized protein LOC101493401 isoform X1 [Cicer arietinum])

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 37/129 (28.68%), Postives = 69/129 (53.49%), Query Frame = 1


Query: 2   STPTEAEINNALTTIAKPGSKWNTSPKGIQTWAPTCLIAEA--NLWLYFIKRSLIPTTHD 61
           +T ++ ++N+ + T+   G+ W T  KG   W    L  +A   +W   I   L+P ++ 
Sbjct: 193 NTVSDEKLNSIMKTLTVRGTNWKTE-KGKNVWKIPFLALKAIPKVWYRLICTKLLPNSNF 252

Query: 62  ASISRDHVMVIYCIMRGIRLDVGRIIAPQIRGLFF--KPRGQLFFPFLVTRLCA-NAEFM 121
            S+ +D ++++YC++ G  ++VG+II  +I    F  K + +L FP L++ LC  N   +
Sbjct: 253 QSVDKDRLLLLYCVVEGFSINVGKIIYDEIIACAFKKKKKERLLFPSLISDLCVRNGVRV 312

Query: 122 EDAPVRAVN 126
           ED     +N
Sbjct: 313 EDDDEVVIN 320

The following BLAST results are available for this feature:

BLAST of Cla003765 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RBS1_9ROSA	3.8e-12	29.75	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]
W9QTD9_9ROSA	1.4e-11	31.16	Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1	[more]
A0A0A0LAN0_CUCSA	3.0e-09	30.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]
A0A0A0L2P0_CUCSA	1.4e-06	34.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1	[more]

BLAST of Cla003765 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703082781\|ref\|XP_010092041.1\|	5.4e-12	29.75	hypothetical protein L484_000844 [Morus notabilis]	[more]
gi\|703087370\|ref\|XP_010093253.1\|	2.1e-11	31.16	hypothetical protein L484_022412 [Morus notabilis]	[more]
gi\|700202594\|gb\|KGN57727.1\|	4.3e-09	30.00	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
gi\|502170179\|ref\|XP_004514776.1\|	3.1e-07	28.68	PREDICTED: uncharacterized protein LOC101493401 isoform X3 [Cicer arietinum]	[more]
gi\|828335831\|ref\|XP_012575515.1\|	3.1e-07	28.68	PREDICTED: uncharacterized protein LOC101493401 isoform X1 [Cicer arietinum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003765	Cla003765.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003765	Cucumber (Chinese Long) v3	cucwmB101
Cla003765	Watermelon (97103) v2	wmwmbB406
Cla003765	Watermelon (97103) v2	wmwmbB412
Cla003765	Wax gourd	wgowmB680
Cla003765	Cucumber (Gy14) v1	cgywmB601
Cla003765	Melon (DHL92) v3.5.1	mewmB290
Cla003765	Watermelon (Charleston Gray)	wcgwmB344
Cla003765	Watermelon (Charleston Gray)	wcgwmB350
Cla003765	Cucumber (Chinese Long) v2	cuwmB090
Cla003765	Bottle gourd (USVL1VR-Ls)	lsiwmB418
Cla003765	Bottle gourd (USVL1VR-Ls)	lsiwmB419
Cla003765	Cucumber (Gy14) v2	cgybwmB089
Cla003765	Melon (DHL92) v3.6.1	medwmB286