Cla003756 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003756
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 13959337 .. 13959939 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGACGCCCTCACAACCATCACCAAACCGGGGTCAAAGTGGAACACTTCCCTAAAGGGCATTCAGACATTGGCGCTAACTTGCTTGATCGCCGAGGCCAACCTGTGGCTTTACTTCATCAAGCAGTTGCTAATCCCCACAACGCATGACGTCTCAATTTCAAGGGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAGACGTGGGACGCATCATTGGCCCACAGATTCGGGGGTTGTTTTACAAGCCAATGGGTCAGCTGTTCTTCCCCTTTCTTGTGACAAGACTGTTCGCCAACACAGAATTCATGAAGGATGTGCCAGTCAGAGTAGTAAATGGGATCCTTTCAGCCCAAAGTCTGAGACGGATATTAAAGGACTCCCCGCATCTGCTTGAGGCAGCCAACTCAAACAAGAGGCTGACCAAGTTAAAGAACCATCATCCCCCCAACCTCCTCAACCCAAGAAGAGGAAACTTGTCAAGAAAAATTTTGAGATTAAGGCGTCGAGTTCACAACCTAGTGAAGCTGAAGAAACTGTTCAGCTCGCGCCAACACACAAGCCTTGACCATTTATACTCCTCCCATTGA

mRNA sequence

ATGAATGACGCCCTCACAACCATCACCAAACCGGGGTCAAAGTGGAACACTTCCCTAAAGGGCATTCAGACATTGGCGCTAACTTGCTTGATCGCCGAGGCCAACCTGTGGCTTTACTTCATCAAGCAGTTGCTAATCCCCACAACGCATGACGTCTCAATTTCAAGGGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAGACGTGGGACGCATCATTGGCCCACAGATTCGGGGGTTGTTTTACAAGCCAATGGGTCAGCTGTTCTTCCCCTTTCTTGTGACAAGACTGTTCGCCAACACAGAATTCATGAAGGATGTGCCAGTCAGAGTAGTAAATGGGATCCTTTCAGCCCAAAGTCTGAGACGGATATTAAAGGACTCCCCGCATCTGCTTGAGGCAGCCAACTCAAACAAGAGGCTGACCAAGTTAAAGAACCATCATCCCCCCAACCTCCTCAACCCAAGAAGAGGAAACTTGTCAAGAAAAATTTTGAGATTAAGGCGTCGAGTTCACAACCTAGTGAAGCTGAAGAAACTGTTCAGCTCGCGCCAACACACAAGCCTTGACCATTTATACTCCTCCCATTGA

Coding sequence (CDS)

ATGAATGACGCCCTCACAACCATCACCAAACCGGGGTCAAAGTGGAACACTTCCCTAAAGGGCATTCAGACATTGGCGCTAACTTGCTTGATCGCCGAGGCCAACCTGTGGCTTTACTTCATCAAGCAGTTGCTAATCCCCACAACGCATGACGTCTCAATTTCAAGGGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAGACGTGGGACGCATCATTGGCCCACAGATTCGGGGGTTGTTTTACAAGCCAATGGGTCAGCTGTTCTTCCCCTTTCTTGTGACAAGACTGTTCGCCAACACAGAATTCATGAAGGATGTGCCAGTCAGAGTAGTAAATGGGATCCTTTCAGCCCAAAGTCTGAGACGGATATTAAAGGACTCCCCGCATCTGCTTGAGGCAGCCAACTCAAACAAGAGGCTGACCAAGTTAAAGAACCATCATCCCCCCAACCTCCTCAACCCAAGAAGAGGAAACTTGTCAAGAAAAATTTTGAGATTAAGGCGTCGAGTTCACAACCTAGTGAAGCTGAAGAAACTGTTCAGCTCGCGCCAACACACAAGCCTTGACCATTTATACTCCTCCCATTGA

Protein sequence

MNDALTTITKPGSKWNTSLKGIQTLALTCLIAEANLWLYFIKQLLIPTTHDVSISRDRAMVIYCIMRGIRLDVGRIIGPQIRGLFYKPMGQLFFPFLVTRLFANTEFMKDVPVRVVNGILSAQSLRRILKDSPHLLEAANSNKRLTKLKNHHPPNLLNPRRGNLSRKILRLRRRVHNLVKLKKLFSSRQHTSLDHLYSSH

Homology

[Close]

BLAST of Cla003756 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.8e-09
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 1


Query: 1   MNDALTTITKPGSKWNTSLKGIQTLALTCLIAEANLWLYFIKQLLIPTTHDVSISRDRAM 60
           + + L TI   G++W  S KG  T     L   A +W +F+   L+ +TH  +ISR+RA+
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  VIYCIMRGIRLDVGRIIGPQIRGLFYKPMGQLFFPFLVTRL 102
           ++Y ++ G  ++VGR+I  QIR    K  G L+FP L++ L
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISEL 257

[Close]

BLAST of Cla003756 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08
Identity = 30/101 (29.70%), Postives = 61/101 (60.40%), Query Frame = 1


Query: 1   MNDALTTITKPGSKWNTSLKGIQTLALTCLIAEANLWLYFIKQLLIPTTHDVSISRDRAM 60
           +++ +  +   G++W  + +G  T    CL     +W +F++  L+P++H   + ++RA+
Sbjct: 124 LDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERAI 183

Query: 61  VIYCIMRGIRLDVGRIIGPQIRGLFYKPMGQLFFPFLVTRL 102
           ++YC+M+G  L+VGR+I  Q+     +  G L+FP L+T+L
Sbjct: 184 LLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQL 224

[Close]

BLAST of Cla003756 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 37/127 (29.13%), Postives = 67/127 (52.76%), Query Frame = 1


Query: 5   LTTITKPGSKWNTSLKGIQTLALTCLIAEANLWLYFIKQLLIPTTHDVSISRDRAMVIYC 64
           L  +   G+ W  S +G  T     L   A +W +F+    +P+TH  ++++DR +++Y 
Sbjct: 89  LAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYS 148

Query: 65  IMRGIRLDVGRIIGPQIRGL-FYKPMGQLFFPFLVTRLF--ANTEFMKDVPVRVVNGILS 124
           I+ GI +++  I   +I+     +  G L+FP L+T+L+  AN  + KD  +    G +S
Sbjct: 149 ILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKDEAIVHNAGAIS 208

Query: 125 AQSLRRI 129
             S+ RI
Sbjct: 209 TLSISRI 215

[Close]

BLAST of Cla003756 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 1


Query: 36  LWLYFIKQLLIPTTHDVSISRDRAMVIYCIMRGIRLDVGRIIGPQIRGLFYKPMGQLFFP 95
           +WL  IK+ ++PT H  +IS +R M++YCIM+ I +++G+II   I  L   P G   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 96  FLVTRLFANTEFM--KDVPVRVVNGILSAQSLRRIL 130
           +L+ +L      M  K   V V +GI    +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla003756 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 1


Query: 1   MNDALTTITKPGSKWNTSLKGIQTLALTCLIAEANLWLYFIKQLLIPTTHDVSISRDRAM 60
           + + L TI   G++W  S KG  T     L   A +W +F+   L+ +TH  +ISR+RA+
Sbjct: 157 LKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRAI 216

Query: 61  VIYCIMRGIRLDVGRIIGPQIRGLFYKPMGQLFFPFLVTRL 102
           ++Y ++ G  ++VGR+I  QIR    K  G L+FP L++ L
Sbjct: 217 LLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISEL 257

[Close]

BLAST of Cla003756 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 67.4 bits (163), Expect = 3.2e-08
Identity = 30/101 (29.70%), Postives = 61/101 (60.40%), Query Frame = 1


Query: 1   MNDALTTITKPGSKWNTSLKGIQTLALTCLIAEANLWLYFIKQLLIPTTHDVSISRDRAM 60
           +++ +  +   G++W  + +G  T    CL     +W +F++  L+P++H   + ++RA+
Sbjct: 124 LDEVINELCVEGTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERAI 183

Query: 61  VIYCIMRGIRLDVGRIIGPQIRGLFYKPMGQLFFPFLVTRL 102
           ++YC+M+G  L+VGR+I  Q+     +  G L+FP L+T+L
Sbjct: 184 LLYCMMKGRPLNVGRMIRQQVGVCAGRKNGGLWFPSLITQL 224

[Close]

BLAST of Cla003756 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 37/127 (29.13%), Postives = 67/127 (52.76%), Query Frame = 1


Query: 5   LTTITKPGSKWNTSLKGIQTLALTCLIAEANLWLYFIKQLLIPTTHDVSISRDRAMVIYC 64
           L  +   G+ W  S +G  T     L   A +W +F+    +P+TH  ++++DR +++Y 
Sbjct: 89  LAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYS 148

Query: 65  IMRGIRLDVGRIIGPQIRGL-FYKPMGQLFFPFLVTRLF--ANTEFMKDVPVRVVNGILS 124
           I+ GI +++  I   +I+     +  G L+FP L+T+L+  AN  + KD  +    G +S
Sbjct: 149 ILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKDEAIVHNAGAIS 208

Query: 125 AQSLRRI 129
             S+ RI
Sbjct: 209 TLSISRI 215

[Close]

BLAST of Cla003756 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 1


Query: 36  LWLYFIKQLLIPTTHDVSISRDRAMVIYCIMRGIRLDVGRIIGPQIRGLFYKPMGQLFFP 95
           +WL  IK+ ++PT H  +IS +R M++YCIM+ I +++G+II   I  L   P G   F 
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 96  FLVTRLFANTEFM--KDVPVRVVNGILSAQSLRRIL 130
           +L+ +L      M  K   V V +GI    +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

The following BLAST results are available for this feature:

BLAST of Cla003756 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RBS1_9ROSA	7.8e-09	36.63	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]
W9S7D3_9ROSA	2.3e-08	29.70	Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1	[more]
W9QTD9_9ROSA	1.5e-07	29.13	Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1	[more]
A0A0A0LAN0_CUCSA	1.6e-06	36.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]

BLAST of Cla003756 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703082781\|ref\|XP_010092041.1\|	1.1e-08	36.63	hypothetical protein L484_000844 [Morus notabilis]	[more]
gi\|703121924\|ref\|XP_010102456.1\|	3.2e-08	29.70	hypothetical protein L484_006967 [Morus notabilis]	[more]
gi\|703087370\|ref\|XP_010093253.1\|	2.1e-07	29.13	hypothetical protein L484_022412 [Morus notabilis]	[more]
gi\|700202594\|gb\|KGN57727.1\|	2.3e-06	36.46	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003756	Cla003756.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003756	Cucumber (Gy14) v1	cgywmB601
Cla003756	Melon (DHL92) v3.5.1	mewmB290
Cla003756	Watermelon (Charleston Gray)	wcgwmB344
Cla003756	Watermelon (Charleston Gray)	wcgwmB350
Cla003756	Cucumber (Chinese Long) v2	cuwmB090
Cla003756	Bottle gourd (USVL1VR-Ls)	lsiwmB418
Cla003756	Bottle gourd (USVL1VR-Ls)	lsiwmB419
Cla003756	Cucumber (Gy14) v2	cgybwmB089
Cla003756	Melon (DHL92) v3.6.1	medwmB286
Cla003756	Cucumber (Chinese Long) v3	cucwmB101
Cla003756	Watermelon (97103) v2	wmwmbB406
Cla003756	Watermelon (97103) v2	wmwmbB412
Cla003756	Wax gourd	wgowmB680