Cla003750 (gene) Watermelon (97103) v1

Overview
NameCla003750
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGag/pol protein (Fragment) (AHRD V1 ***- E2GK51_BRYDI)
LocationChr6 : 13817603 .. 13817947 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGTGCTACTATTAACTTGCTTAGTGTTGATAAATTGAATGGCAAAAACTATACAACATGGAAAAACACAATGAATACTGTGCTTATCATTAACGACCTGAAGTTTGTCTTACATGAAAAGTGTCCTCAGGTCCCCGCTCCCAATGCATCTCAAAAGCTTCGTGATGCATACGAGAGGTGGATAAAGGCAAACGAGAAGGCCAAAGCATACATTCTTGTCAGCTTAACTGAAGTATTGCCTACGAAACATAAACCCATGGTCACTGCATGTAAGATCATGGATTCATTGAGAGAGATATGTTTGGACAACCGTCCTCTCAGATCAAGCACAGTGCTCTAA

mRNA sequence

ATGTCTAGTGCTACTATTAACTTGCTTAGTGTTGATAAATTGAATGGCAAAAACTATACAACATGGAAAAACACAATGAATACTGTGCTTATCATTAACGACCTGAAGTTTGTCTTACATGAAAAGTGTCCTCAGGTCCCCGCTCCCAATGCATCTCAAAAGCTTCGTGATGCATACGAGAGGTGGATAAAGGCAAACGAGAAGGCCAAAGCATACATTCTTGTCAGCTTAACTGAAGTATTGCCTACGAAACATAAACCCATGGTCACTGCATGTAAGATCATGGATTCATTGAGAGAGATATGTTTGGACAACCGTCCTCTCAGATCAAGCACAGTGCTCTAA

Coding sequence (CDS)

ATGTCTAGTGCTACTATTAACTTGCTTAGTGTTGATAAATTGAATGGCAAAAACTATACAACATGGAAAAACACAATGAATACTGTGCTTATCATTAACGACCTGAAGTTTGTCTTACATGAAAAGTGTCCTCAGGTCCCCGCTCCCAATGCATCTCAAAAGCTTCGTGATGCATACGAGAGGTGGATAAAGGCAAACGAGAAGGCCAAAGCATACATTCTTGTCAGCTTAACTGAAGTATTGCCTACGAAACATAAACCCATGGTCACTGCATGTAAGATCATGGATTCATTGAGAGAGATATGTTTGGACAACCGTCCTCTCAGATCAAGCACAGTGCTCTAA

Protein sequence

MSSATINLLSVDKLNGKNYTTWKNTMNTVLIINDLKFVLHEKCPQVPAPNASQKLRDAYERWIKANEKAKAYILVSLTEVLPTKHKPMVTACKIMDSLREICLDNRPLRSSTVL
Homology
[Close]
BLAST of Cla003750 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-26
Identity = 55/101 (54.46%), Postives = 82/101 (81.19%), Query Frame = 1 

Query: 1   MSSATINLLSVDKLNGKNYTTWKNTMNTVLIINDLKFVLHEKCPQVPAPNASQKLRDAYE 60
           M+++ + LL+ +KLNG NY+ WK+ +NT+L+++DL+FVL E+CPQ PA NA++ +R+AY+
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIKANEKAKAYILVSLTEVLPTKHKPMVTACKIMDSLREI 102
           RW+KAN+KA+ YIL S+T+VL  KH  + TA  IMDSLRE+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREM 101

[Close]
BLAST of Cla003750 vs. TrEMBL
Match: W9RVT2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.8e-22
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1 

Query: 1   MSSATINLLSVDKLNGKNYTTWKNTMNTVLIINDLKFVLHEKCPQVPAPNASQKLRDAYE 60
           MS+  I LL+ +K +G NY  WK+ MN +L+  D KFVL E+CPQ PA NAS+  R+ Y+
Sbjct: 1   MSNPIITLLATEKPDGDNYAKWKSNMNILLVCEDYKFVLVEECPQEPAVNASKTAREPYD 60

Query: 61  RWIKANEKAKAYILVSLTEVLPTKHKPMVTACKIMDSLREI 102
           RWIKAN KAK ++L S+++VL  KH+ M TA +IM+SL  I
Sbjct: 61  RWIKANNKAKCFMLASMSDVLHKKHEEMETAYEIMESLEAI 101

[Close]
BLAST of Cla003750 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-21
Identity = 49/101 (48.51%), Postives = 75/101 (74.26%), Query Frame = 1 

Query: 1   MSSATINLLSVDKLNGKNYTTWKNTMNTVLIINDLKFVLHEKCPQVPAPNASQKLRDAYE 60
           M+++ + LL+ +KLN  NY+ WK+ +NT+L++ DL+F+L E+C Q PA NA++ +R+AY+
Sbjct: 1   MNTSIVQLLASEKLNSDNYSAWKSNLNTILVVEDLRFILTEECHQAPALNANRTVREAYD 60

Query: 61  RWIKANEKAKAYILVSLTEVLPTKHKPMVTACKIMDSLREI 102
           RW KAN+KA  YIL S+T+VL  K+  + T   IMDS RE+
Sbjct: 61  RWGKANDKACVYILASMTDVLAKKYDSIATTKGIMDSFREM 101

[Close]
BLAST of Cla003750 vs. TrEMBL
Match: W9RXH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-20
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 1 

Query: 1  MSSATINLLSVDKLNGKNYTTWKNTMNTVLIINDLKFVLHEKCPQVPAPNASQKLRDAYE 60
          M +  I LL+ +KL+G NY  WK+ MN +L+  D KF+L E+CP  PA NAS+  R+ Y+
Sbjct: 1  MPNPIITLLATEKLDGDNYAKWKSNMNILLVCEDYKFLLAEECPLEPADNASKTAREPYD 60

Query: 61 RWIKANEKAKAYILVSLTEVLPTKHKPMVTACKIMDSL 99
          RWIKAN KAK ++L S+++VL  KH  M TA +IM+SL
Sbjct: 61 RWIKANNKAKCFMLASMSDVLRKKHGEMETAYEIMESL 98

[Close]
BLAST of Cla003750 vs. TrEMBL
Match: W9QZZ5_9ROSA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis GN=L484_012392 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-20
Identity = 49/99 (49.49%), Postives = 70/99 (70.71%), Query Frame = 1 

Query: 1   MSSATINLLSVDKLNGKNYTTWKNTMNTVLIINDLKFVLHEKCPQVPAPNASQKLRDAYE 60
           MS+  I LL+ +KL+G NY  WK+ MN +L+  D KFV+ E+CP  PA NA++  R+ Y+
Sbjct: 1   MSNPIITLLATEKLDGDNYAKWKSNMNILLVCEDYKFVIVEECPPKPAANATKAAREPYD 60

Query: 61  RWIKANEKAKAYILVSLTEVLPTKHKPMVTACKIMDSLR 100
           RWIKAN KAK ++L S+++VL  KH+ M TA +IM+  R
Sbjct: 61  RWIKANNKAKCFMLASMSDVLRKKHEEMETAYEIMEIQR 99

[Close]
BLAST of Cla003750 vs. NCBI nr
Match: gi|659072276|ref|XP_008464721.1| (PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 7.7e-31
Identity = 67/99 (67.68%), Postives = 86/99 (86.87%), Query Frame = 1 

Query: 3   SATINLLSVDKLNGKNYTTWKNTMNTVLIINDLKFVLHEKCPQVPAPNASQKLRDAYERW 62
           SAT+N+L+VDKLNG NY +WKNT+NTVLII+DL FVL E+CPQVPA NA++ +R+AYERW
Sbjct: 2   SATLNMLAVDKLNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERW 61

Query: 63  IKANEKAKAYILVSLTEVLPTKHKPMVTACKIMDSLREI 102
            KANEKA+AYIL SL++VL  KH+ M+T  +IMDSL+E+
Sbjct: 62  AKANEKARAYILASLSKVLAKKHESMLTTREIMDSLQEM 100

[Close]
BLAST of Cla003750 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.9e-30
Identity = 66/101 (65.35%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 1   MSSATINLLSVDKLNGKNYTTWKNTMNTVLIINDLKFVLHEKCPQVPAPNASQKLRDAYE 60
           M+SAT+N+L  DK NG NY +WKNT+NTVLII+DL+FVL EKCPQV A NA++ +R+AYE
Sbjct: 1   MTSATLNMLVADKFNGNNYASWKNTINTVLIIDDLRFVLVEKCPQVSAANATRTVREAYE 60

Query: 61  RWIKANEKAKAYILVSLTEVLPTKHKPMVTACKIMDSLREI 102
           RW KANEKA+AY+L SL+EVL  K++ M+TA +IMDSL+E+
Sbjct: 61  RWAKANEKARAYLLASLSEVLAKKNESMLTAREIMDSLQEM 101

[Close]
BLAST of Cla003750 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 55/101 (54.46%), Postives = 82/101 (81.19%), Query Frame = 1 

Query: 1   MSSATINLLSVDKLNGKNYTTWKNTMNTVLIINDLKFVLHEKCPQVPAPNASQKLRDAYE 60
           M+++ + LL+ +KLNG NY+ WK+ +NT+L+++DL+FVL E+CPQ PA NA++ +R+AY+
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 61  RWIKANEKAKAYILVSLTEVLPTKHKPMVTACKIMDSLREI 102
           RW+KAN+KA+ YIL S+T+VL  KH  + TA  IMDSLRE+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREM 101

[Close]
BLAST of Cla003750 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 5.7e-26
Identity = 55/99 (55.56%), Postives = 79/99 (79.80%), Query Frame = 1 

Query: 1   MSSATINLLSVDKLNGKNYTTWKNTMNTVLIINDLKFVLHEKCPQVPAPNASQKLRDAYE 60
           M+S+ + LL+ +KLNG NY  WK+ +NT+L+++DL+FVL E+CPQ P+ NASQ  R AY+
Sbjct: 1   MNSSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPQTPSSNASQTSRKAYD 60

Query: 61  RWIKANEKAKAYILVSLTEVLPTKHKPMVTACKIMDSLR 100
           RWIKANEKA+ YIL S+++VL  KH+ + TA +IM+SL+
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLK 99

[Close]
BLAST of Cla003750 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 4.8e-25
Identity = 54/99 (54.55%), Postives = 79/99 (79.80%), Query Frame = 1 

Query: 1   MSSATINLLSVDKLNGKNYTTWKNTMNTVLIINDLKFVLHEKCPQVPAPNASQKLRDAYE 60
           M+S+ + LL+ +K+N  NY  WK+ +NT+L+++DL+FVL E+CPQ PA NA++  R+AY+
Sbjct: 1   MNSSIVQLLASEKINDDNYAAWKSNLNTILVVDDLRFVLTEECPQNPASNANRTGREAYD 60

Query: 61  RWIKANEKAKAYILVSLTEVLPTKHKPMVTACKIMDSLR 100
           RWIKANEKA+ YIL S+++VL  KH+ + TA +IMDSLR
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLR 99

The following BLAST results are available for this feature:
BLAST of Cla003750 vs. TrEMBL
Match NameE-valueIdentityDescription
E2GK51_BRYDI1.0e-2654.46Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9RVT2_9ROSA7.8e-2252.48Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1[more]
E2GK52_BRYDI1.0e-2148.51Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9RXH5_9ROSA1.9e-2051.02Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1[more]
W9QZZ5_9ROSA2.5e-2049.49Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis G... [more]
BLAST of Cla003750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072276|ref|XP_008464721.1|7.7e-3167.68PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo][more]
gi|659113933|ref|XP_008456826.1|2.9e-3065.35PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
gi|299474487|gb|ADJ18449.1|1.5e-2654.46gag/pol protein [Bryonia dioica][more]
gi|659086056|ref|XP_008443743.1|5.7e-2655.56PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
gi|778697615|ref|XP_011654359.1|4.8e-2554.55PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003750Cla003750.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003750Melon (DHL92) v3.5.1mewmB290
Cla003750Watermelon (Charleston Gray)wcgwmB344
Cla003750Watermelon (Charleston Gray)wcgwmB350
Cla003750Cucumber (Chinese Long) v2cuwmB090
Cla003750Bottle gourd (USVL1VR-Ls)lsiwmB418
Cla003750Bottle gourd (USVL1VR-Ls)lsiwmB419
Cla003750Cucumber (Gy14) v2cgybwmB089
Cla003750Melon (DHL92) v3.6.1medwmB286
Cla003750Cucumber (Chinese Long) v3cucwmB101
Cla003750Watermelon (97103) v2wmwmbB406
Cla003750Watermelon (97103) v2wmwmbB412
Cla003750Wax gourdwgowmB680