Cla003742 (gene) Watermelon (97103) v1

Overview
NameCla003742
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 13523422 .. 13523901 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATGGAAGCAATTTTGTGAAAGTGCCCAAGTCATCCAACCCACCGCCGTGGAGGCATTTTACAAAGGAACCATTCACCGCAAGGCACACATAGTCAAAGTTGAAGATGAGGTGATTTCCTTCGAGCCTCAAGAGATCAATGGGTTGTTTGATCTTCCCGACATCGCGGCGGTAGAGGGTAATAGAATAATGTCGTCGCCTACAGAAGCCGAAATGAATGACGCCCTCACCACAACCATCGCCAAACCAGGGTCAAAGTGGAACACTTCCCCAAAATGCATTCAGACATTGGTGCCAAATTGCTTGATCGTCGAGGCCAACCTGTGGCTTTACTTCATTAAGCGGTCGCTAATCCCCACAACGCATGACGCCTCAATTTCAAGGGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAGACGTGGGACGCAACATTGCCCCACAGATTCGGGGGTTGTTTTTCTAG

mRNA sequence

ATGGGATGGAAGCAATTTTGTGAAAGTGCCCAAGTCATCCAACCCACCGCCGTGGAGGCATTTTACAAAGGAACCATTCACCGCAAGGCACACATAGTCAAAGTTGAAGATGAGGTGATTTCCTTCGAGCCTCAAGAGATCAATGGGTTGTTTGATCTTCCCGACATCGCGGCGGTAGAGGGTAATAGAATAATGTCGTCGCCTACAGAAGCCGAAATGAATGACGCCCTCACCACAACCATCGCCAAACCAGGGTCAAAGTGGAACACTTCCCCAAAATGCATTCAGACATTGGTGCCAAATTGCTTGATCGTCGAGGCCAACCTGTGGCTTTACTTCATTAAGCGGTCGCTAATCCCCACAACGCATGACGCCTCAATTTCAAGGGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAGACGTGGGACGCAACATTGCCCCACAGATTCGGGGGTTGTTTTTCTAG

Coding sequence (CDS)

ATGGGATGGAAGCAATTTTGTGAAAGTGCCCAAGTCATCCAACCCACCGCCGTGGAGGCATTTTACAAAGGAACCATTCACCGCAAGGCACACATAGTCAAAGTTGAAGATGAGGTGATTTCCTTCGAGCCTCAAGAGATCAATGGGTTGTTTGATCTTCCCGACATCGCGGCGGTAGAGGGTAATAGAATAATGTCGTCGCCTACAGAAGCCGAAATGAATGACGCCCTCACCACAACCATCGCCAAACCAGGGTCAAAGTGGAACACTTCCCCAAAATGCATTCAGACATTGGTGCCAAATTGCTTGATCGTCGAGGCCAACCTGTGGCTTTACTTCATTAAGCGGTCGCTAATCCCCACAACGCATGACGCCTCAATTTCAAGGGACCGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGGCTAGACGTGGGACGCAACATTGCCCCACAGATTCGGGGGTTGTTTTTCTAG

Protein sequence

MGWKQFCESAQVIQPTAVEAFYKGTIHRKAHIVKVEDEVISFEPQEINGLFDLPDIAAVEGNRIMSSPTEAEMNDALTTTIAKPGSKWNTSPKCIQTLVPNCLIVEANLWLYFIKRSLIPTTHDASISRDRAMVIYCIMRGIRLDVGRNIAPQIRGLFF
Homology
[Close]
BLAST of Cla003742 vs. TrEMBL
Match: A0A061FAJ6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-10
Identity = 41/152 (26.97%), Postives = 74/152 (48.68%), Query Frame = 1 

Query: 3   WKQFCESAQVIQPTAVEAFYKGTIHRKAHIVKVEDEVISFEPQEINGLFDLPDIAAVEGN 62
           W QFC    V+    V  FY   +     +  V  + + F  Q IN L   P+I   E  
Sbjct: 62  WHQFCHQPNVVVVLVVREFYATVVEHVDGVAFVRGKHVPFHSQAINELLRTPNIENDEYG 121

Query: 63  RIMSSPTEAEMNDALTTTIAKPGSKWNTSPKCIQTLVPNCLIVEANLWLYFIKRSLIPTT 122
           + +    +    + + +T+   G++W TS     +   + +  E  +WL+F+   L+P+T
Sbjct: 122 QYLGDHQDC---NEIISTLCIEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPST 181

Query: 123 HDASISRDRAMVIYCIMRGIRLDVGRNIAPQI 155
           H + +++DRA++IY I+    +DVG+ I+  I
Sbjct: 182 HISDVTKDRAVLIYAIVTHKSIDVGKVISHAI 210

[Close]
BLAST of Cla003742 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.5e-10
Identity = 37/145 (25.52%), Postives = 71/145 (48.97%), Query Frame = 1 

Query: 2   GWKQFCESAQVIQPTAVEAFYKGTIHRKAHIVKVEDEVISFEPQEINGLFDLPDIAAVEG 61
           GW+QFC+         V  FY   +      V V++  + F  + IN +F L ++  V+ 
Sbjct: 15  GWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSIFGLEEV--VDE 74

Query: 62  NRIMSSPTEAEMNDALTTTIAKPGSKWNTSPKCIQTLVPNCLIVEANLWLYFIKRSLIPT 121
               +S    E  + +   +A  G+ W  SP+   T +   L   A +W +F+    +P+
Sbjct: 75  YVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPS 134

Query: 122 THDASISRDRAMVIYCIMRGIRLDV 147
           TH  ++++DR +++Y I+ GI +++
Sbjct: 135 THGKTVAKDRVLLLYSILTGISVNI 157

[Close]
BLAST of Cla003742 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-08
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 1 

Query: 2   GWKQFCESAQVIQPTAVEAFYKGTIHRKAHIVKVEDEVISFEPQEINGLFDLPDIAAVEG 61
           GW+ FC          V+ FY    ++  + V V +  I+F    ING+  +P+    E 
Sbjct: 87  GWQIFCRHPIDPIVPLVKEFYANLQNQGQNTVFVWEIDITFTSNYINGVLGIPN-QDDEF 146

Query: 62  NRIMSSPTEAEMNDALTTTIAKPGSKWNTSPKCIQTLVPNCLIVEANLWLYFIKRSLIPT 121
             +++   E ++ + L T IA  G++W  S K   T   + L   A +W +F+   L+ +
Sbjct: 147 VELITDAIEEQLKEVLKT-IAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLS 206

Query: 122 THDASISRDRAMVIYCIMRGIRLDVGRNIAPQIR 156
           TH  +ISR+RA+++Y ++ G  ++VGR I  QIR
Sbjct: 207 THGKTISRNRAILLYAVLVGKPINVGRLIIDQIR 238

[Close]
BLAST of Cla003742 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 32/108 (29.63%), Postives = 61/108 (56.48%), Query Frame = 1 

Query: 47  INGLFDLPDIAAVEGNRIMSSPTEAEMNDALTTTIAKPGSKWNTSPKCIQTLVPNCLIVE 106
           IN L+DLPD+     N    S  E ++++ +     + G++W  + +   T    CL   
Sbjct: 99  INSLYDLPDVED-HFNSFADSLNEDQLDEVINELCVE-GTEWWRATRGSMTFPKECLQPG 158

Query: 107 ANLWLYFIKRSLIPTTHDASISRDRAMVIYCIMRGIRLDVGRNIAPQI 155
             +W +F++  L+P++H   + ++RA+++YC+M+G  L+VGR I  Q+
Sbjct: 159 PKIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPLNVGRMIRQQV 204

[Close]
BLAST of Cla003742 vs. TrEMBL
Match: W9QVA2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016576 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 40/136 (29.41%), Postives = 64/136 (47.06%), Query Frame = 1 

Query: 16  TAVEAFY-KGTIHRKAHIVKVEDEVISFEPQEINGLFDLPDIAAVEGNRIMSSPTEAEMN 75
           T V  FY  G   R    V V  +++SF P+ IN  +D   I  VE +   +   E    
Sbjct: 8   TVVREFYANGYYQRDNDEVCVRGKMVSFTPEVINRYYD---IGEVEDDEYAAFLIEGRDY 67

Query: 76  DALTTTIAKPGSKWNTSPK---CIQTLVPNCLIVEANLWLYFIKRSLIPTTHDASISRDR 135
           D +   +  PG++W T             NCL + A  W  FI  S++PT+H+  +  +R
Sbjct: 68  DPIVREMCIPGTEWATKEDDSDVAHYFPKNCLNIHAKAWNKFICASIMPTSHEHQVYTNR 127

Query: 136 AMVIYCIMRGIRLDVG 148
           A +++ I +G  +D+G
Sbjct: 128 AALLFAICKGWSIDIG 140

[Close]
BLAST of Cla003742 vs. NCBI nr
Match: gi|590612524|ref|XP_007022408.1| (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 73.6 bits (179), Expect = 3.6e-10
Identity = 41/152 (26.97%), Postives = 74/152 (48.68%), Query Frame = 1 

Query: 3   WKQFCESAQVIQPTAVEAFYKGTIHRKAHIVKVEDEVISFEPQEINGLFDLPDIAAVEGN 62
           W QFC    V+    V  FY   +     +  V  + + F  Q IN L   P+I   E  
Sbjct: 62  WHQFCHQPNVVVVLVVREFYATVVEHVDGVAFVRGKHVPFHSQAINELLRTPNIENDEYG 121

Query: 63  RIMSSPTEAEMNDALTTTIAKPGSKWNTSPKCIQTLVPNCLIVEANLWLYFIKRSLIPTT 122
           + +    +    + + +T+   G++W TS     +   + +  E  +WL+F+   L+P+T
Sbjct: 122 QYLGDHQDC---NEIISTLCIEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPST 181

Query: 123 HDASISRDRAMVIYCIMRGIRLDVGRNIAPQI 155
           H + +++DRA++IY I+    +DVG+ I+  I
Sbjct: 182 HISDVTKDRAVLIYAIVTHKSIDVGKVISHAI 210

[Close]
BLAST of Cla003742 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 37/145 (25.52%), Postives = 71/145 (48.97%), Query Frame = 1 

Query: 2   GWKQFCESAQVIQPTAVEAFYKGTIHRKAHIVKVEDEVISFEPQEINGLFDLPDIAAVEG 61
           GW+QFC+         V  FY   +      V V++  + F  + IN +F L ++  V+ 
Sbjct: 15  GWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSIFGLEEV--VDE 74

Query: 62  NRIMSSPTEAEMNDALTTTIAKPGSKWNTSPKCIQTLVPNCLIVEANLWLYFIKRSLIPT 121
               +S    E  + +   +A  G+ W  SP+   T +   L   A +W +F+    +P+
Sbjct: 75  YVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPS 134

Query: 122 THDASISRDRAMVIYCIMRGIRLDV 147
           TH  ++++DR +++Y I+ GI +++
Sbjct: 135 THGKTVAKDRVLLLYSILTGISVNI 157

[Close]
BLAST of Cla003742 vs. NCBI nr
Match: gi|848863901|ref|XP_012832708.1| (PREDICTED: uncharacterized protein LOC105953582 [Erythranthe guttata])

HSP 1 Score: 70.1 bits (170), Expect = 4.0e-09
Identity = 44/145 (30.34%), Postives = 70/145 (48.28%), Query Frame = 1 

Query: 2   GWKQFCESAQVIQPTAVEAFYKGTIHRKAHI-VKVEDEVISFEPQEINGLFDLPDIAAVE 61
           GW+ F E       + V  F+    H   +  VKV D V+ F+P  IN  F+LPD++ +E
Sbjct: 84  GWQSFIEDPGEANVSMVREFFANAAHSDNNTSVKVRDVVVRFDPAHINNYFNLPDLS-LE 143

Query: 62  GNRIMSSPTEAEMNDALTTTIAKPGSKWNTSPKCIQTLVPNCLIVEANLWLYFIKRSLIP 121
           G   +   T   + D L  T+   G+ W    K       + L  EA  W YF+   L+P
Sbjct: 144 GYNTVKKKT---IFDDLIRTLCPRGTSWKEEKKSFNR---SELSKEAKAWAYFVSARLLP 203

Query: 122 TTHDASISRDRAMVIYCIMRGIRLD 146
           T+  +++   R ++IY I+ GI ++
Sbjct: 204 TSAVSTVLPPRLLLIYAIIIGIDIN 221

[Close]
BLAST of Cla003742 vs. NCBI nr
Match: gi|848885002|ref|XP_012842756.1| (PREDICTED: uncharacterized protein LOC105962958 [Erythranthe guttata])

HSP 1 Score: 69.7 bits (169), Expect = 5.2e-09
Identity = 44/145 (30.34%), Postives = 70/145 (48.28%), Query Frame = 1 

Query: 2   GWKQFCESAQVIQPTAVEAFYKGTIHRKAHI-VKVEDEVISFEPQEINGLFDLPDIAAVE 61
           GW+ F E       + V  F+    H   +  VKV D V+ F+P  IN  F+LPD++ +E
Sbjct: 84  GWQSFIEDPGEANVSMVREFFANAAHSDNNTSVKVRDVVVRFDPAHINNYFNLPDLS-LE 143

Query: 62  GNRIMSSPTEAEMNDALTTTIAKPGSKWNTSPKCIQTLVPNCLIVEANLWLYFIKRSLIP 121
           G   +   T   + D L  T+   G+ W    K       + L  EA  W YF+   L+P
Sbjct: 144 GYNTVKKKT---IFDDLIRTLCPRGTSWKGEKKSFNR---SELSKEAKAWAYFVSARLLP 203

Query: 122 TTHDASISRDRAMVIYCIMRGIRLD 146
           T+  +++   R ++IY I+ GI ++
Sbjct: 204 TSAVSTVLPPRLLLIYAIIIGIDIN 221

[Close]
BLAST of Cla003742 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 1 

Query: 2   GWKQFCESAQVIQPTAVEAFYKGTIHRKAHIVKVEDEVISFEPQEINGLFDLPDIAAVEG 61
           GW+ FC          V+ FY    ++  + V V +  I+F    ING+  +P+    E 
Sbjct: 87  GWQIFCRHPIDPIVPLVKEFYANLQNQGQNTVFVWEIDITFTSNYINGVLGIPN-QDDEF 146

Query: 62  NRIMSSPTEAEMNDALTTTIAKPGSKWNTSPKCIQTLVPNCLIVEANLWLYFIKRSLIPT 121
             +++   E ++ + L T IA  G++W  S K   T   + L   A +W +F+   L+ +
Sbjct: 147 VELITDAIEEQLKEVLKT-IAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLS 206

Query: 122 THDASISRDRAMVIYCIMRGIRLDVGRNIAPQIR 156
           TH  +ISR+RA+++Y ++ G  ++VGR I  QIR
Sbjct: 207 THGKTISRNRAILLYAVLVGKPINVGRLIIDQIR 238

The following BLAST results are available for this feature:
BLAST of Cla003742 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061FAJ6_THECC2.5e-1026.97Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1[more]
W9QTD9_9ROSA9.5e-1025.52Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1[more]
W9RBS1_9ROSA2.3e-0830.52Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1[more]
W9S7D3_9ROSA2.0e-0729.63Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1[more]
W9QVA2_9ROSA3.4e-0729.41Uncharacterized protein OS=Morus notabilis GN=L484_016576 PE=4 SV=1[more]
BLAST of Cla003742 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|590612524|ref|XP_007022408.1|3.6e-1026.97Uncharacterized protein TCM_032752 [Theobroma cacao][more]
gi|703087370|ref|XP_010093253.1|1.4e-0925.52hypothetical protein L484_022412 [Morus notabilis][more]
gi|848863901|ref|XP_012832708.1|4.0e-0930.34PREDICTED: uncharacterized protein LOC105953582 [Erythranthe guttata][more]
gi|848885002|ref|XP_012842756.1|5.2e-0930.34PREDICTED: uncharacterized protein LOC105962958 [Erythranthe guttata][more]
gi|703082781|ref|XP_010092041.1|3.4e-0830.52hypothetical protein L484_000844 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003742Cla003742.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003742Melon (DHL92) v3.5.1mewmB290
Cla003742Watermelon (Charleston Gray)wcgwmB344
Cla003742Bottle gourd (USVL1VR-Ls)lsiwmB419
Cla003742Watermelon (97103) v2wmwmbB406
Cla003742Wax gourdwgowmB680