Cla003741 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003741
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 13705396 .. 13705644 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTATCCAGGGGTCGCGGACCGACCATAG

mRNA sequence

ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTATCCAGGGGTCGCGGACCGACCATAG

Coding sequence (CDS)

ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTATCCAGGGGTCGCGGACCGACCATAG

Protein sequence

MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVADRP

Homology

[Close]

BLAST of Cla003741 vs. TrEMBL
Match: U5CKY2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02909p00006680 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-40
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGRLRYPGVADRP 83
          HPVGTTRSPQGRLR+PGVADRP
Sbjct: 61 HPVGTTRSPQGRLRHPGVADRP 82

[Close]

BLAST of Cla003741 vs. TrEMBL
Match: A0A151UE16_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_050059 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-32
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66
          VVGVGGS RV SSGIPGEEDQVGPCEQLDALSPFNPLSEMR+KE +SMDRPHRLHPVGTT
Sbjct: 1  VVGVGGSPRVSSSGIPGEEDQVGPCEQLDALSPFNPLSEMRKKEKESMDRPHRLHPVGTT 60

Query: 67 RSPQGRLRYPGVADRP 83
          RSPQGRLR+PGVADRP
Sbjct: 61 RSPQGRLRHPGVADRP 76

[Close]

BLAST of Cla003741 vs. TrEMBL
Match: D7MVM4_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_683153 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.2e-29
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 21 IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD 80
          IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD
Sbjct: 36 IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD 95

Query: 81 RP 83
          RP
Sbjct: 96 RP 97

[Close]

BLAST of Cla003741 vs. TrEMBL
Match: U5D9L3_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00061p00179620 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-27
Identity = 62/77 (80.52%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWT+VGV GS RV S+GIPGEEDQVGPCEQLDALSPF PL EM QKE KSM RPHRL
Sbjct: 1  MDRTWTIVGVDGSHRVTSAGIPGEEDQVGPCEQLDALSPFTPLIEMWQKEEKSMGRPHRL 60

Query: 61 HPVGTTRSPQGRLRYPG 78
          HP+GTTRS QGRL   G
Sbjct: 61 HPIGTTRSSQGRLGIQG 77

[Close]

BLAST of Cla003741 vs. TrEMBL
Match: A0A0K9PBW1_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_313G00200 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-25
Identity = 59/71 (83.10%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MD TW  VGVG S RVPSS IPGEEDQVGPCEQ DAL PFNPLSEM QKE K MDRPHRL
Sbjct: 1  MDHTWMTVGVGSSSRVPSSEIPGEEDQVGPCEQFDALPPFNPLSEMWQKERKFMDRPHRL 60

Query: 61 HPVGTTRSPQG 72
          HPVGTTRS QG
Sbjct: 61 HPVGTTRSSQG 71

[Close]

BLAST of Cla003741 vs. NCBI nr
Match: gi|548835773|gb|ERM97427.1| (hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda])

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-40
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGRLRYPGVADRP 83
          HPVGTTRSPQGRLR+PGVADRP
Sbjct: 61 HPVGTTRSPQGRLRHPGVADRP 82

[Close]

BLAST of Cla003741 vs. NCBI nr
Match: gi|1012366342|gb|KYP77523.1| (hypothetical protein KK1_050059, partial [Cajanus cajan])

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-32
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66
          VVGVGGS RV SSGIPGEEDQVGPCEQLDALSPFNPLSEMR+KE +SMDRPHRLHPVGTT
Sbjct: 1  VVGVGGSPRVSSSGIPGEEDQVGPCEQLDALSPFNPLSEMRKKEKESMDRPHRLHPVGTT 60

Query: 67 RSPQGRLRYPGVADRP 83
          RSPQGRLR+PGVADRP
Sbjct: 61 RSPQGRLRHPGVADRP 76

[Close]

BLAST of Cla003741 vs. NCBI nr
Match: gi|297790838|ref|XP_002863304.1| (predicted protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 134.4 bits (337), Expect = 8.9e-29
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 21 IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD 80
          IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD
Sbjct: 36 IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD 95

Query: 81 RP 83
          RP
Sbjct: 96 RP 97

[Close]

BLAST of Cla003741 vs. NCBI nr
Match: gi|548861813|gb|ERN19184.1| (hypothetical protein AMTR_s00061p00179620 [Amborella trichopoda])

HSP 1 Score: 129.0 bits (323), Expect = 3.7e-27
Identity = 62/77 (80.52%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWT+VGV GS RV S+GIPGEEDQVGPCEQLDALSPF PL EM QKE KSM RPHRL
Sbjct: 1  MDRTWTIVGVDGSHRVTSAGIPGEEDQVGPCEQLDALSPFTPLIEMWQKEEKSMGRPHRL 60

Query: 61 HPVGTTRSPQGRLRYPG 78
          HP+GTTRS QGRL   G
Sbjct: 61 HPIGTTRSSQGRLGIQG 77

[Close]

BLAST of Cla003741 vs. NCBI nr
Match: gi|901808862|gb|KMZ65670.1| (hypothetical protein ZOSMA_313G00200 [Zostera marina])

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-25
Identity = 59/71 (83.10%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MD TW  VGVG S RVPSS IPGEEDQVGPCEQ DAL PFNPLSEM QKE K MDRPHRL
Sbjct: 1  MDHTWMTVGVGSSSRVPSSEIPGEEDQVGPCEQFDALPPFNPLSEMWQKERKFMDRPHRL 60

Query: 61 HPVGTTRSPQG 72
          HPVGTTRS QG
Sbjct: 61 HPVGTTRSSQG 71

The following BLAST results are available for this feature:

BLAST of Cla003741 vs. TrEMBL


Match Name	E-value	Identity	Description
U5CKY2_AMBTC	1.6e-40	98.78	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02909p00006680 PE=4 SV=...	[more]
A0A151UE16_CAJCA	1.2e-32	92.11	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_050059 PE=4 SV=1	[more]
D7MVM4_ARALL	6.2e-29	100.00	Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_683153 PE=4 ...	[more]
U5D9L3_AMBTC	2.6e-27	80.52	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00061p00179620 PE=4 SV=...	[more]
A0A0K9PBW1_ZOSMR	1.4e-25	83.10	Uncharacterized protein OS=Zostera marina GN=ZOSMA_313G00200 PE=4 SV=1	[more]

BLAST of Cla003741 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|548835773\|gb\|ERM97427.1\|	2.2e-40	98.78	hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda]	[more]
gi\|1012366342\|gb\|KYP77523.1\|	1.7e-32	92.11	hypothetical protein KK1_050059, partial [Cajanus cajan]	[more]
gi\|297790838\|ref\|XP_002863304.1\|	8.9e-29	100.00	predicted protein [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|548861813\|gb\|ERN19184.1\|	3.7e-27	80.52	hypothetical protein AMTR_s00061p00179620 [Amborella trichopoda]	[more]
gi\|901808862\|gb\|KMZ65670.1\|	2.0e-25	83.10	hypothetical protein ZOSMA_313G00200 [Zostera marina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003741	Cla003741.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003741	ClCG02G009760	Watermelon (Charleston Gray)	wcgwmB202

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003741	Watermelon (97103) v1	wmwmB005