Cla003707 (gene) Watermelon (97103) v1

Overview
NameCla003707
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionNuclear cap-binding protein subunit 2 (AHRD V1 **** B6TL33_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait
LocationChr2 : 12775024 .. 12778782 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTGCTGTTCAAGGTAAATTGCTTTTTTACTTCCATTTTAGATAACTAAGATCTTTTCCTGCAGTTAGTATTTCATTGCACAGTTAAATTTGTTTTCCACTCCACTAGGTTAATTGGGTGCGTCAAAGATGTCTTTACAAGTTCTATTGGGACATGTTTGATGGTTTTATTTTGATTTATTTTATTTGCGAGACTCATTTTGATGCCAAATGTTGCCGTTTTAGTTTGGGCGTCGTGTGGGAGTAGGCTGCTGGTGTTTCAAATTATGTTAAGACATGTTGTGGTGGTAGGCTGGTAGCATCTGTTCAACAACTTTAACCTAGTCCGCTGTCCTGTATAAATTATCTTAACTAATGCAAGTTGTTTCTTATTCCAAAAGGAATTGATTTTGTACCGTATGTTTGTTTAATAGCTTTTGATCGGTATTATAGTTTTATCAGCATTATTTTGAGTTAAGTGGGTTTGGTGAGATTTCAACCTCTGACCTCCTGGTTAGTTGAGGATACATGCCTAAATCTAGTTGAAGTTGGCAAATTTGTGACCATTATGGCAAAGGGTATTCTGATTATTGTTATTACAAATCACAGTGTCTTGATGTTAAAACATTGAGAACTATACAAAACTCCAATTACTTTGAAAGAAATCTATAGAAAGGAATAATGTCACATATAAGCAGTTAGATAGATGATATAGATACTTTTTCTATGATTTCTATCTAAGACAAGATTCTTGCTTTCAACTTTATCATTTGTAGGACCCATCGAAGCTATCTGTTTATCGGGATAGAAGATTTCATGGAACACAAGATGAATTTGAAGTGGCACTTCAGACTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACAACGGAAGAGCAAGTTTATGAGCTTTTCTTTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTGTAAGACTTCATAGCTCTTCCTAACTAGTAGAACCATCTTAATATGCTTTATATCAATATTCAACCAACAATTTTCTACCATGGGAATTAATTACTAAACTTATTTATTTATGTCTCTGCTGTTCAAAACCCTCTATGGTTGATAGAATCATACAAGAGAGTTAGGGGAGGGAGAGAGTAGTCTCTTGAAAACTACCCATATGTGTTATTGACCTTGTTACTTAATTATATGATGATTTTTCTATAGATACTCTGATTTCTACCAGTGGTCCATTAATGCAGTTTCCCTACTCTTTTGTTCATAGATATCACTTCATATGCTCCCATAAGATTTTTGATCCTCATGATTGTCACCTGTTTATTGCGTAACATTTTGAATACTTGAAAGCAGTTGATAATGATTGATATATCTTTCTGGGTCGATTTTAACCTTGAGATTATTTGCTCATCTCATGGCTTTAGTACTCATTCTTGCAAGAAATGATTTACATATATCTGTCTCTAAGCCTTTCAAATTATTGGGCAAATCCTTTTAAGTGGCTGCTTATTTCATCTGTACTTTGTTAGATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGTCCCATCCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTACTGTTTTTAATCTATGTCACATTCCTGACTTGGAGTTTACCATCACTTCCTGTTTATTTCCTTTTGCTTTGTTGTTCACAGGTGCGTGATGAATATCGAACGGACTATGATCCTGATATCCTTTTTTCTTTTAATACTTTTACTCACTATATAGATTATGGAAACCCACAGTCTGATGCTCTGAAAATTAAATTTCTTTTGCATTTCTTTGGTTACCACCAACCAATATTAGTTTCTCTTTTTATACATACATACTTAAATATATGTGTGTGTGTAGGATAACAAATATACTTATATAATATTGGTTTCAATGACTAATTCTTTTGCACAATGGACACAACATTATGTCAATGTTCCAAAAACCATTACATAGGTATGTTGGGGATGCCTTTTAAAAAAAAATTATATGATGTGTATGGATTGATATATTTAATACTTCATAATAGATAAAACATAAATTTAACATAAAAATAAACTTTACTTAACAAAAAACATATAAAACCAAAGTCAATTACAATGTTGCAAGGTTTGGTTGGCTGTGGCTGGAGGAAGAAGATATGATCCTAACGGTTTAAGAACGATCTGGAGCATGGGAATTAGATTATGTTATAAGATCCAACTCATTTAGTCTGTTGAGTTGTGTGACATTGATGACCATCATCACCCTACTGACTTCTCTGTGTGGCATGTGATACATATCCTAAACTTTTGTTGAATTTAATAACTCATTCATATGTAAGTGCTTTCTGATAGTGTTAATTTTTTTGACACCTCACGTCCTTTAAATTTCACATTTCTTTTTAGTTTCCTTAATTTATTGAACGTAGAGGTGGGTATGGAAAATTAGTTCAGAAAGAGTTGGAAGAACAGAGGCAGCTTGTGGATTATGGTACTGGTTCACTAGGCTCTATGCCGCCAGTCATGCCTCAATGTAAGTTGCTTTGAGGAATGCTCTACATATATATTGTGTATAAACGTGATTTGATGTGCCTTTATTTCATGTTTTTCCTTTTCTCCTGCAGATGGAAAACATGGTGGAAGCCACGGACATGGGCATCGTCATGGTAGAGGTATCAAATTTCTAAAGCATTTTAATCATCTGTGAACGATAATTTATTTGCACTCTGGCATTTTTCTGGTATTTATTGGACTACATTATTGTTGTTTCAAAAACTAGATTACCACCATCGTAAGCGCTATCGAGATGATGATCACCATGCTCACGAGAGCTTTAAGAGAACTTCAGATTATGAGTCTAGGAGAAACCCCGATCATGAATCGAGACTGGTAATTTCTAAACAATGCCTTTGCCTCTAGGACTTGTTTGAGAGTAATTCTAGAAAAAGTGGTCTTTAGTGAAGAGTTTTTATTAAAAGTAATTATTGTATATTTATTTTAGTGTTCGATTCTACACATTTAGAAGGGAGTTTAATACGAAGTGATTTTGAATGAGTTAATTTTTGACATAGAATTGATTAAGTGCATGTTTGGGAGTTATTCTTACATTGTTAAAATAACTTTTATCATGTTCAAATCACTCTAAAATATGCTTTTAATCACTCAAATAATTTAAATATAATTTTCATATCATCAAAATTGGTTTGGAATGATTGGAAGCTTGTTTCAAAGGATTTTGAAAATGACAAAATTGACTTTAACCATTCTAGAATAAGACTCAAACATGTCCTTAGTCATTCCAAAATCGACCCAATCATGCCCTTAGTCATTCCAAAATCACTCCAACCATGTCCTTAAGTCATCTTTGTGTGCTTAAATTTTCACCAGAGGCACCAGATGCCTACATGCCATATTTTCCTTAGTTACACAAAGCTGGATGTAATCAACAATGTCTGGTAGTTTGGTCAGGCTTTCATTGCTTTTTAATAAATTCCGTTAACTTCAGTTGTTATCATTATTATGTAAACTGCCTTTCTATGGTTTTGGCTGTATATATTGCTTTGCTTCAGTATTTAACAGTTTGGGCTGTTACAGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGACGAAGAGGATGACGATGACCAAAAGCAGCGACACTAA

mRNA sequence

ATGGCTTTGCTGTTCAAGGACCCATCGAAGCTATCTGTTTATCGGGATAGAAGATTTCATGGAACACAAGATGAATTTGAAGTGGCACTTCAGACTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACAACGGAAGAGCAAGTTTATGAGCTTTTCTTTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGTCCCATCCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTGCGTGATGAATATCGAACGGACTATGATCCTGATATCCTTTTTTCTTTTAATACTTTTACTCACTATATAGATTATGGAAACCCACAAGGTGGGTATGGAAAATTAGTTCAGAAAGAGTTGGAAGAACAGAGGCAGCTTGTGGATTATGGTACTGGTTCACTAGGCTCTATGCCGCCAGTCATGCCTCAATATGGAAAACATGGTGGAAGCCACGGACATGGGCATCGTCATGGTAGAGATTACCACCATCGTAAGCGCTATCGAGATGATGATCACCATGCTCACGAGAGCTTTAAGAGAACTTCAGATTATGAGTCTAGGAGAAACCCCGATCATGAATCGAGACTGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGACGAAGAGGATGACGATGACCAAAAGCAGCGACACTAA

Coding sequence (CDS)

ATGGCTTTGCTGTTCAAGGACCCATCGAAGCTATCTGTTTATCGGGATAGAAGATTTCATGGAACACAAGATGAATTTGAAGTGGCACTTCAGACTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACAACGGAAGAGCAAGTTTATGAGCTTTTCTTTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGTCCCATCCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTGCGTGATGAATATCGAACGGACTATGATCCTGATATCCTTTTTTCTTTTAATACTTTTACTCACTATATAGATTATGGAAACCCACAAGGTGGGTATGGAAAATTAGTTCAGAAAGAGTTGGAAGAACAGAGGCAGCTTGTGGATTATGGTACTGGTTCACTAGGCTCTATGCCGCCAGTCATGCCTCAATATGGAAAACATGGTGGAAGCCACGGACATGGGCATCGTCATGGTAGAGATTACCACCATCGTAAGCGCTATCGAGATGATGATCACCATGCTCACGAGAGCTTTAAGAGAACTTCAGATTATGAGTCTAGGAGAAACCCCGATCATGAATCGAGACTGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGACGAAGAGGATGACGATGACCAAAAGCAGCGACACTAA

Protein sequence

MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH
Homology
[Close]
BLAST of Cla003707 vs. Swiss-Prot
Match: NCBP2_ARATH (Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana GN=CBP20 PE=1 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.3e-105
Identity = 190/273 (69.60%), Postives = 219/273 (80.22%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MA LFK+ +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELF RAGEI
Sbjct: 1   MASLFKEQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVKYISGTILDDRPIRVDFDWGFQ+GRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYGTG
Sbjct: 121 RGRSGGQVRDEYRTDYDP-----------------ARGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPPVMP-QYG---KHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYES 240
           SLG+ P   P  YG   + GG++G G  +RHGR  +HRKR RDDD +  ++ +R +D+ES
Sbjct: 181 SLGAYPQAAPTNYGNGRRGGGNYGQGGQNRHGRGDYHRKRQRDDDRYGRDNSRRNTDHES 240

Query: 241 RRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR 268
           RR+ D + R EKNPRFRESGDSD++ +DD+K+R
Sbjct: 241 RRDTDSDMRPEKNPRFRESGDSDDDGEDDRKRR 256

[Close]
BLAST of Cla003707 vs. Swiss-Prot
Match: NCBP2_ORYSJ (Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica GN=CBP20 PE=2 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 4.4e-93
Identity = 179/269 (66.54%), Postives = 198/269 (73.61%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MA LFKDP+KLS YRDRRF GTQ+E+E ALQ S TVYVGNMSFYTTEEQ YELF RAGEI
Sbjct: 1   MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           +KIIMGLDKNSKTPCGFCF+LYYSRED EDAVKYISGT+LDDRPIRVDFDWGF++GRQWG
Sbjct: 61  RKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDP                  +GGYGK+VQKELE QR+LVDYG  
Sbjct: 121 RGRSGGQVRDEYRTDYDPG-----------------RGGYGKMVQKELEAQRELVDYGG- 180

Query: 181 SLGSMPPVMPQYGKHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNP 240
                P   PQY +     G+G  +R+ RDY  RKRYR+D+     S +R  D E +R+ 
Sbjct: 181 --AFQPNAPPQYDRGDRKRGYGDSYRNDRDY-QRKRYRNDE----RSSQRAPDSEFKRDA 240

Query: 241 DHESRLEKNPRFRESGDSDEEDDDDQKQR 268
                 EKNPRFRE GDSDEEDDD  K+R
Sbjct: 241 IDS---EKNPRFREKGDSDEEDDDYDKRR 241

[Close]
BLAST of Cla003707 vs. Swiss-Prot
Match: NCBP2_DICDI (Nuclear cap-binding protein subunit 2 OS=Dictyostelium discoideum GN=ncbp2 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.8e-50
Identity = 120/265 (45.28%), Postives = 152/265 (57.36%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           M+ L+  P     Y D++   TQDEF+ A+  S+T+YVG +SFYTTEEQ+YELF + GEI
Sbjct: 1   MSELYSTPQPF--YYDKKSGFTQDEFKHAIDKSSTIYVGYLSFYTTEEQLYELFSKCGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           K+IIMGLD+N KTPCGFCFV YYS+ED  D +KYI+G+ LD+R IR D+D+GF++GRQ+G
Sbjct: 61  KRIIMGLDRNQKTPCGFCFVEYYSKEDAADCIKYINGSKLDERLIRCDWDYGFKEGRQYG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RG SGGQVRDEYRTDYDP                  +GGYGK  Q E++   Q  D   G
Sbjct: 121 RGLSGGQVRDEYRTDYDPG-----------------RGGYGKQRQFEMD---QFSDVNGG 180

Query: 181 SLGSMPPV--MPQYGKHGGSHGHGHRHGRDYHHRKRYR--DDDHHAHESFKRTSDYESRR 240
            +     +  + Q  +    +   +  G   +  KR R  DDD    +SFKR  D     
Sbjct: 181 DITYQQQILQLQQSQQQHQLYQQANAGGPQNYSGKRNRGADDD---SDSFKRQRD---NN 234

Query: 241 NPDHESRLEKNPRFRESGDSDEEDD 262
                       RFRE    DEEDD
Sbjct: 241 GSISAGNTPNKGRFRE---RDEEDD 234

[Close]
BLAST of Cla003707 vs. Swiss-Prot
Match: NCBP2_IXOSC (Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis GN=Cbp20 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.5e-48
Identity = 93/158 (58.86%), Postives = 117/158 (74.05%), Query Frame = 1 

Query: 11  LSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKN 70
           LS YRD+ F G++ E E  L+ STT+YVGNMSFYTTEEQ+YELF + G++KK+IMGLD+ 
Sbjct: 5   LSSYRDQHFKGSRSEQERLLRLSTTLYVGNMSFYTTEEQIYELFSKCGDVKKVIMGLDRF 64

Query: 71  SKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRD 130
            KTPCGFCFV YY+RED E+A++Y++GT LDDR IR D+D GF +GRQ+GRG+SGGQVRD
Sbjct: 65  HKTPCGFCFVEYYTREDAENAIRYVNGTKLDDRIIRTDWDAGFVEGRQFGRGKSGGQVRD 124

Query: 131 EYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKEL 169
           EYRTDYD                 + +GGYGKL+ + +
Sbjct: 125 EYRTDYD-----------------SGRGGYGKLMAQRV 145

[Close]
BLAST of Cla003707 vs. Swiss-Prot
Match: NCBP2_RAT (Nuclear cap-binding protein subunit 2 OS=Rattus norvegicus GN=Ncbp2 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.3e-48
Identity = 96/158 (60.76%), Postives = 114/158 (72.15%), Query Frame = 1 

Query: 10  KLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDK 69
           +LS YRD+ F G  +E E  L+ S T+YVGN+SFYTTEEQ+YELF ++G+IKKIIMGLDK
Sbjct: 16  ELSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query: 70  NSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVR 129
             KT CGFCFV YYSR D E+A++YI+GT LDDR IR D+D GF++GRQ+GRGRSGGQVR
Sbjct: 76  MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVR 135

Query: 130 DEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKE 168
           DEYR DYD                   +GGYGKL QK+
Sbjct: 136 DEYREDYDAG-----------------RGGYGKLAQKQ 156

[Close]
BLAST of Cla003707 vs. TrEMBL
Match: A0A0A0KVX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129020 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 1.1e-138
Identity = 240/268 (89.55%), Postives = 248/268 (92.54%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MA LFKDP+KLS+YRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEI
Sbjct: 1   MASLFKDPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDPDILFSF            +GGYGKLVQKELE QRQLVDYGTG
Sbjct: 121 RGRSGGQVRDEYRTDYDPDILFSFQ-----------EGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDH 240
           SLGSM PVMPQYGKHGGSHGHG+RHGRDYHHRKRYRDDD HAHES KRTSDYESRRN ++
Sbjct: 181 SLGSMAPVMPQYGKHGGSHGHGNRHGRDYHHRKRYRDDDRHAHESSKRTSDYESRRNSNY 240

Query: 241 ESRLEKNPRFRESGDSDEEDDDDQKQRH 269
           ESR EKNPRFRESGDSDEEDDDD+KQRH
Sbjct: 241 ESRPEKNPRFRESGDSDEEDDDDRKQRH 257

[Close]
BLAST of Cla003707 vs. TrEMBL
Match: A0A0B2R7I8_GLYSO (Nuclear cap-binding protein subunit 2 OS=Glycine soja GN=glysoja_007640 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 7.7e-121
Identity = 218/270 (80.74%), Postives = 233/270 (86.30%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MALLFKDPSK+S YRDRRF GTQ+EFE AL TSTTVYVGNMSFYTTEEQVYELF RAGEI
Sbjct: 1   MALLFKDPSKISAYRDRRFPGTQEEFEHALLTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVLYYSREDTED  KYISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLYYSREDTEDVCKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDPDIL               + GYGKLVQKELE QRQLVDYGTG
Sbjct: 121 RGRSGGQVRDEYRTDYDPDILLIV------------ECGYGKLVQKELEVQRQLVDYGTG 180

Query: 181 SLGSMPPVMP-QYGKHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRN 240
           SLGS PPV+P  YG+HGG HGHG  HRHGRDY +RKR+RDDD H HES KR SD+ESRRN
Sbjct: 181 SLGSFPPVIPTSYGRHGGGHGHGGSHRHGRDY-YRKRHRDDDRHIHESSKRNSDHESRRN 240

Query: 241 PDHESRLEKNPRFRESGDSDEEDDDDQKQR 268
            DHESR EKNPRFRESGDSD++++DD+K+R
Sbjct: 241 TDHESRPEKNPRFRESGDSDDDEEDDRKRR 257

[Close]
BLAST of Cla003707 vs. TrEMBL
Match: I1LUI7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G206400 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 8.5e-120
Identity = 216/270 (80.00%), Postives = 231/270 (85.56%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MALLFKDPSK+S YRDRRF GTQ+EFE AL TSTTVYVGNMSFYTTEEQVYELF RAGEI
Sbjct: 1   MALLFKDPSKISAYRDRRFPGTQEEFEHALLTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVLYYSREDTED  KYISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLYYSREDTEDVCKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYGTG
Sbjct: 121 RGRSGGQVRDEYRTDYDPG-----------------RGGYGKLVQKELEVQRQLVDYGTG 180

Query: 181 SLGSMPPVMP-QYGKHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRN 240
           SLGS PPV+P  YG+HGG HGHG  HRHGRDY +RKR+RDDD H HES KR SD+ESRRN
Sbjct: 181 SLGSFPPVIPTSYGRHGGGHGHGGSHRHGRDY-YRKRHRDDDRHIHESSKRNSDHESRRN 240

Query: 241 PDHESRLEKNPRFRESGDSDEEDDDDQKQR 268
            DHESR EKNPRFRESGDSD++++DD+K+R
Sbjct: 241 TDHESRPEKNPRFRESGDSDDDEEDDRKRR 252

[Close]
BLAST of Cla003707 vs. TrEMBL
Match: A0A0S3SHJ5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G100500 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 1.5e-119
Identity = 217/274 (79.20%), Postives = 233/274 (85.04%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MALLFKDPSKLS YRDRRF GTQ++FE ALQTS+TVYVGNMSFYTTEEQVYELF RAGEI
Sbjct: 1   MALLFKDPSKLSAYRDRRFPGTQEDFEHALQTSSTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVLYYSREDTEDA KYISGTILDDR IRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRLIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYGTG
Sbjct: 121 RGRSGGQVRDEYRTDYDPG-----------------RGGYGKLVQKELEVQRQLVDYGTG 180

Query: 181 SLGSMPPVMP-QYGKHGGSHGHG------HRHGRDYHHRKRYRDDDHHAHESFKRTSDYE 240
           SLGS PPV+P  YG+HGG HGHG      HRHGRDY +RKR+RDDD H HES KRTSD++
Sbjct: 181 SLGSFPPVIPSSYGRHGGGHGHGHGHGGSHRHGRDY-YRKRHRDDDRHTHESSKRTSDHD 240

Query: 241 SRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR 268
           SRRN DHESR EKNPRFRESGDSD+E++DD+K+R
Sbjct: 241 SRRNTDHESRPEKNPRFRESGDSDDEEEDDRKRR 256

[Close]
BLAST of Cla003707 vs. TrEMBL
Match: V7BXM9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G100900g PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 7.2e-119
Identity = 216/274 (78.83%), Postives = 232/274 (84.67%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MALLFKDPSKLS YRDRRF GTQ++FE AL TSTTVYVGNMSFYTTEEQVYELF RAGEI
Sbjct: 1   MALLFKDPSKLSAYRDRRFPGTQEDFEHALLTSTTVYVGNMSFYTTEEQVYELFTRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVLYYSREDTEDA KYISGTILDDR IRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRLIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYGTG
Sbjct: 121 RGRSGGQVRDEYRTDYDPG-----------------RGGYGKLVQKELEVQRQLVDYGTG 180

Query: 181 SLGSMPPVMP-QYGKHGGSHGHG------HRHGRDYHHRKRYRDDDHHAHESFKRTSDYE 240
           SLGS PPV+P  YG+HGG HGHG      HRHGRDY +RKR+RDDD H HES KRTSD++
Sbjct: 181 SLGSFPPVIPSSYGRHGGGHGHGHGHGGSHRHGRDY-YRKRHRDDDRHTHESSKRTSDHD 240

Query: 241 SRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR 268
           SRRN DHESR EKNPRFRESGDSD++++DD+K+R
Sbjct: 241 SRRNTDHESRPEKNPRFRESGDSDDDEEDDRKRR 256

[Close]
BLAST of Cla003707 vs. NCBI nr
Match: gi|700198627|gb|KGN53785.1| (hypothetical protein Csa_4G129020 [Cucumis sativus])

HSP 1 Score: 500.7 bits (1288), Expect = 1.5e-138
Identity = 240/268 (89.55%), Postives = 248/268 (92.54%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MA LFKDP+KLS+YRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEI
Sbjct: 1   MASLFKDPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDPDILFSF            +GGYGKLVQKELE QRQLVDYGTG
Sbjct: 121 RGRSGGQVRDEYRTDYDPDILFSFQ-----------EGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDH 240
           SLGSM PVMPQYGKHGGSHGHG+RHGRDYHHRKRYRDDD HAHES KRTSDYESRRN ++
Sbjct: 181 SLGSMAPVMPQYGKHGGSHGHGNRHGRDYHHRKRYRDDDRHAHESSKRTSDYESRRNSNY 240

Query: 241 ESRLEKNPRFRESGDSDEEDDDDQKQRH 269
           ESR EKNPRFRESGDSDEEDDDD+KQRH
Sbjct: 241 ESRPEKNPRFRESGDSDEEDDDDRKQRH 257

[Close]
BLAST of Cla003707 vs. NCBI nr
Match: gi|449438721|ref|XP_004137136.1| (PREDICTED: nuclear cap-binding protein subunit 2 [Cucumis sativus])

HSP 1 Score: 486.1 bits (1250), Expect = 3.9e-134
Identity = 234/268 (87.31%), Postives = 242/268 (90.30%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MA LFKDP+KLS+YRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEI
Sbjct: 1   MASLFKDPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYGTG
Sbjct: 121 RGRSGGQVRDEYRTDYDPG-----------------RGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDH 240
           SLGSM PVMPQYGKHGGSHGHG+RHGRDYHHRKRYRDDD HAHES KRTSDYESRRN ++
Sbjct: 181 SLGSMAPVMPQYGKHGGSHGHGNRHGRDYHHRKRYRDDDRHAHESSKRTSDYESRRNSNY 240

Query: 241 ESRLEKNPRFRESGDSDEEDDDDQKQRH 269
           ESR EKNPRFRESGDSDEEDDDD+KQRH
Sbjct: 241 ESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]
BLAST of Cla003707 vs. NCBI nr
Match: gi|659129219|ref|XP_008464581.1| (PREDICTED: nuclear cap-binding protein subunit 2 [Cucumis melo])

HSP 1 Score: 486.1 bits (1250), Expect = 3.9e-134
Identity = 235/268 (87.69%), Postives = 241/268 (89.93%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MA LFKDP+KLSVYRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEI
Sbjct: 1   MASLFKDPTKLSVYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYGTG
Sbjct: 121 RGRSGGQVRDEYRTDYDPG-----------------RGGYGKLVQKELEAQRQLVDYGTG 180

Query: 181 SLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDH 240
           SLGSM PVM QYGKHGGSHGHGHRHGRDYHHRKRYRDDD HAHES KRTSDYESRRN ++
Sbjct: 181 SLGSMAPVMTQYGKHGGSHGHGHRHGRDYHHRKRYRDDDRHAHESSKRTSDYESRRNSNY 240

Query: 241 ESRLEKNPRFRESGDSDEEDDDDQKQRH 269
           ESR EKNPRFRESGDSDEEDDDD+KQRH
Sbjct: 241 ESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]
BLAST of Cla003707 vs. NCBI nr
Match: gi|734392992|gb|KHN27908.1| (Nuclear cap-binding protein subunit 2 [Glycine soja])

HSP 1 Score: 441.4 bits (1134), Expect = 1.1e-120
Identity = 218/270 (80.74%), Postives = 233/270 (86.30%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MALLFKDPSK+S YRDRRF GTQ+EFE AL TSTTVYVGNMSFYTTEEQVYELF RAGEI
Sbjct: 1   MALLFKDPSKISAYRDRRFPGTQEEFEHALLTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVLYYSREDTED  KYISGTILDDRPIRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLYYSREDTEDVCKYISGTILDDRPIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDPDIL               + GYGKLVQKELE QRQLVDYGTG
Sbjct: 121 RGRSGGQVRDEYRTDYDPDILLIV------------ECGYGKLVQKELEVQRQLVDYGTG 180

Query: 181 SLGSMPPVMP-QYGKHGGSHGHG--HRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRN 240
           SLGS PPV+P  YG+HGG HGHG  HRHGRDY +RKR+RDDD H HES KR SD+ESRRN
Sbjct: 181 SLGSFPPVIPTSYGRHGGGHGHGGSHRHGRDY-YRKRHRDDDRHIHESSKRNSDHESRRN 240

Query: 241 PDHESRLEKNPRFRESGDSDEEDDDDQKQR 268
            DHESR EKNPRFRESGDSD++++DD+K+R
Sbjct: 241 TDHESRPEKNPRFRESGDSDDDEEDDRKRR 257

[Close]
BLAST of Cla003707 vs. NCBI nr
Match: gi|951072427|ref|XP_014491701.1| (PREDICTED: nuclear cap-binding protein subunit 2 [Vigna radiata var. radiata])

HSP 1 Score: 438.7 bits (1127), Expect = 7.2e-120
Identity = 218/274 (79.56%), Postives = 233/274 (85.04%), Query Frame = 1 

Query: 1   MALLFKDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEI 60
           MALLFKDPSKLS YRDRRF GTQ++FE ALQTSTTVYVGNMSFYTTEEQVYELF RAGEI
Sbjct: 1   MALLFKDPSKLSAYRDRRFPGTQEDFEHALQTSTTVYVGNMSFYTTEEQVYELFSRAGEI 60

Query: 61  KKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWG 120
           KKIIMGLDKN+KTPCGFCFVLYYSREDTEDA KYISGTILDDR IRVDFDWGFQDGRQWG
Sbjct: 61  KKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRLIRVDFDWGFQDGRQWG 120

Query: 121 RGRSGGQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTG 180
           RGRSGGQVRDEYRTDYDP                  +GGYGKLVQKELE QRQLVDYGTG
Sbjct: 121 RGRSGGQVRDEYRTDYDPG-----------------RGGYGKLVQKELEVQRQLVDYGTG 180

Query: 181 SLGSMPPVMP-QYGKHGGSHGHG------HRHGRDYHHRKRYRDDDHHAHESFKRTSDYE 240
           SLGS PPV+P  YG+HGG HGHG      HRHGRDY +RKR+RDDD H HES KRTSD++
Sbjct: 181 SLGSFPPVIPSSYGRHGGGHGHGHGHGGSHRHGRDY-YRKRHRDDDRHTHESSKRTSDHD 240

Query: 241 SRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR 268
           SRRN DHESR EKNPRFRESGDSD+E++DD+K+R
Sbjct: 241 SRRNTDHESRPEKNPRFRESGDSDDEEEDDRKRR 256

The following BLAST results are available for this feature:
BLAST of Cla003707 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NCBP2_ARATH1.3e-10569.60Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana GN=CBP20 PE=1 SV=1[more]
NCBP2_ORYSJ4.4e-9366.54Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica GN=CBP20 P... [more]
NCBP2_DICDI7.8e-5045.28Nuclear cap-binding protein subunit 2 OS=Dictyostelium discoideum GN=ncbp2 PE=3 ... [more]
NCBP2_IXOSC2.5e-4858.86Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis GN=Cbp20 PE=3 SV=1[more]
NCBP2_RAT3.3e-4860.76Nuclear cap-binding protein subunit 2 OS=Rattus norvegicus GN=Ncbp2 PE=1 SV=1[more]
BLAST of Cla003707 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVX7_CUCSA1.1e-13889.55Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129020 PE=4 SV=1[more]
A0A0B2R7I8_GLYSO7.7e-12180.74Nuclear cap-binding protein subunit 2 OS=Glycine soja GN=glysoja_007640 PE=4 SV=... [more]
I1LUI7_SOYBN8.5e-12080.00Uncharacterized protein OS=Glycine max GN=GLYMA_12G206400 PE=4 SV=1[more]
A0A0S3SHJ5_PHAAN1.5e-11979.20Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G100500 PE=... [more]
V7BXM9_PHAVU7.2e-11978.83Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G100900g PE=4 SV=1[more]
BLAST of Cla003707 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198627|gb|KGN53785.1|1.5e-13889.55hypothetical protein Csa_4G129020 [Cucumis sativus][more]
gi|449438721|ref|XP_004137136.1|3.9e-13487.31PREDICTED: nuclear cap-binding protein subunit 2 [Cucumis sativus][more]
gi|659129219|ref|XP_008464581.1|3.9e-13487.69PREDICTED: nuclear cap-binding protein subunit 2 [Cucumis melo][more]
gi|734392992|gb|KHN27908.1|1.1e-12080.74Nuclear cap-binding protein subunit 2 [Glycine soja][more]
gi|951072427|ref|XP_014491701.1|7.2e-12079.56PREDICTED: nuclear cap-binding protein subunit 2 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR027157NCBP2
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0000339RNA cap binding
Vocabulary: Biological Process
TermDefinition
GO:0045292mRNA cis splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005846nuclear cap binding complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045292 mRNA cis splicing, via spliceosome
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005846 nuclear cap binding complex
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0000339 RNA cap binding
molecular_function GO:0003676 nucleic acid binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU38744watermelon EST collection version 2.0transcribed_cluster
WMU59469watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003707Cla003707.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU38744WMU38744transcribed_cluster
WMU59469WMU59469transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 36..106
score: 5.7
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 35..108
score: 1.3
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 34..112
score: 15
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 7..118
score: 8.6
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 27..137
score: 7.12
IPR027157Nuclear cap-binding protein subunit 2PANTHERPTHR1884720 KD NUCLEAR CAP BINDING PROTEINcoord: 1..139
score: 1.8E-123coord: 157..241
score: 1.8E
NoneNo IPR availablePANTHERPTHR18847:SF0NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2coord: 1..139
score: 1.8E-123coord: 157..241
score: 1.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003707Cla97C02G035850Watermelon (97103) v2wmwmbB318
Cla003707ClCG02G009520Watermelon (Charleston Gray)wcgwmB202
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003707Cucurbita maxima (Rimu)cmawmB525