Cla003702 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003702
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 9241961 .. 9242380 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAGATTAGTCTTAACTCCATTGTAGTCGCAATGGCTTCCATTCCTGAGCCTCTGAAGCAATCCAACGGTGACATCGGTTCTGATGAACCGGGTGGGGTGCGCGCCGCCTCTGGACCAGTCGACCCAAGTGAGGGTCCGGTTGGAGTTGTTCTTGGAGAATTTGATTCCGACGAAGGTGGGGAGGTAGTGCTCGTCCATGTAACAAGAGGGCTTACAGAATTTCTGGAAGACGGGGAAGAATTTCTGGTCGGAGACGACTTGGGAGGCGATGGTTCGGTCCATTTCGAACCATTGGGAGCCCTTGCGCCATTGATGGAGGTTGATTGTGGGGCGCATTTTTGGGCTGTAACGGCCGCGGCCCACTGGGCCTGGAAGGTCGTAGGCCTCAATGAAAGTGGATTTGGAGCCCATTAA

mRNA sequence

ATGACAGAGATTAGTCTTAACTCCATTGTAGTCGCAATGGCTTCCATTCCTGAGCCTCTGAAGCAATCCAACGGTGACATCGGTTCTGATGAACCGGGTGGGGTGCGCGCCGCCTCTGGACCAGTCGACCCAAGTGAGGGTCCGGTTGGAGTTGTTCTTGGAGAATTTGATTCCGACGAAGGTGGGGAGGTAGTGCTCGTCCATGTAACAAGAGGGCTTACAGAATTTCTGGAAGACGGGGAAGAATTTCTGGTCGGAGACGACTTGGGAGGCGATGGTTCGGTCCATTTCGAACCATTGGGAGCCCTTGCGCCATTGATGGAGGTTGATTGTGGGGCGCATTTTTGGGCTGTAACGGCCGCGGCCCACTGGGCCTGGAAGGTCGTAGGCCTCAATGAAAGTGGATTTGGAGCCCATTAA

Coding sequence (CDS)

ATGACAGAGATTAGTCTTAACTCCATTGTAGTCGCAATGGCTTCCATTCCTGAGCCTCTGAAGCAATCCAACGGTGACATCGGTTCTGATGAACCGGGTGGGGTGCGCGCCGCCTCTGGACCAGTCGACCCAAGTGAGGGTCCGGTTGGAGTTGTTCTTGGAGAATTTGATTCCGACGAAGGTGGGGAGGTAGTGCTCGTCCATGTAACAAGAGGGCTTACAGAATTTCTGGAAGACGGGGAAGAATTTCTGGTCGGAGACGACTTGGGAGGCGATGGTTCGGTCCATTTCGAACCATTGGGAGCCCTTGCGCCATTGATGGAGGTTGATTGTGGGGCGCATTTTTGGGCTGTAACGGCCGCGGCCCACTGGGCCTGGAAGGTCGTAGGCCTCAATGAAAGTGGATTTGGAGCCCATTAA

Protein sequence

MTEISLNSIVVAMASIPEPLKQSNGDIGSDEPGGVRAASGPVDPSEGPVGVVLGEFDSDEGGEVVLVHVTRGLTEFLEDGEEFLVGDDLGGDGSVHFEPLGALAPLMEVDCGAHFWAVTAAAHWAWKVVGLNESGFGAH

Homology

[Close]

BLAST of Cla003702 vs. TrEMBL
Match: A0A0A0LSQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024225 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.0e-52
Identity = 101/136 (74.26%), Postives = 115/136 (84.56%), Query Frame = 1


Query: 1   MTEISLNSIVVAMASIPEPLKQSNGDIGSDEPGGVRAASGPVDPSEGPVGVVLGEFDSDE 60
           MTEIS NSI++A+A+IP+PLKQ  GDIGS+EPG V AASGP+DPS+GPVGV L E DS++
Sbjct: 1   MTEISFNSIILAVATIPQPLKQFKGDIGSNEPGRVSAASGPIDPSQGPVGVGLRESDSNK 60

Query: 61  GGEVVLVHVTRGLTEFLEDGEEFLVGDDLGGDGSVHFEPLGALAPLMEVDCGAHFWAVTA 120
           GGEVVLVHV R   +FLEDGE  LVGDDLGGDGSVHFEPLG LAPLME+D   HFW V A
Sbjct: 61  GGEVVLVHVARRFAKFLEDGEILLVGDDLGGDGSVHFEPLGTLAPLMELDYWPHFWVVAA 120

Query: 121 AAHWAWKVVGLNESGF 137
           +AHWAWKV+GLNE GF
Sbjct: 121 SAHWAWKVIGLNECGF 136

[Close]

BLAST of Cla003702 vs. NCBI nr
Match: gi|700208741|gb|KGN63837.1| (hypothetical protein Csa_1G024225 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 4.3e-52
Identity = 101/136 (74.26%), Postives = 115/136 (84.56%), Query Frame = 1


Query: 1   MTEISLNSIVVAMASIPEPLKQSNGDIGSDEPGGVRAASGPVDPSEGPVGVVLGEFDSDE 60
           MTEIS NSI++A+A+IP+PLKQ  GDIGS+EPG V AASGP+DPS+GPVGV L E DS++
Sbjct: 1   MTEISFNSIILAVATIPQPLKQFKGDIGSNEPGRVSAASGPIDPSQGPVGVGLRESDSNK 60

Query: 61  GGEVVLVHVTRGLTEFLEDGEEFLVGDDLGGDGSVHFEPLGALAPLMEVDCGAHFWAVTA 120
           GGEVVLVHV R   +FLEDGE  LVGDDLGGDGSVHFEPLG LAPLME+D   HFW V A
Sbjct: 61  GGEVVLVHVARRFAKFLEDGEILLVGDDLGGDGSVHFEPLGTLAPLMELDYWPHFWVVAA 120

Query: 121 AAHWAWKVVGLNESGF 137
           +AHWAWKV+GLNE GF
Sbjct: 121 SAHWAWKVIGLNECGF 136

The following BLAST results are available for this feature:

BLAST of Cla003702 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSQ5_CUCSA	3.0e-52	74.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024225 PE=4 SV=1	[more]

BLAST of Cla003702 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208741\|gb\|KGN63837.1\|	4.3e-52	74.26	hypothetical protein Csa_1G024225 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003702	Cla003702.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003702	Cucumber (Chinese Long) v3	cucwmB491
Cla003702	Wax gourd	wgowmB321
Cla003702	Cucumber (Gy14) v1	cgywmB661
Cla003702	Wild cucumber (PI 183967)	cpiwmB480
Cla003702	Melon (DHL92) v3.5.1	mewmB304
Cla003702	Watermelon (Charleston Gray)	wcgwmB410
Cla003702	Cucumber (Chinese Long) v2	cuwmB463
Cla003702	Bottle gourd (USVL1VR-Ls)	lsiwmB472
Cla003702	Cucumber (Gy14) v2	cgybwmB436
Cla003702	Melon (DHL92) v3.6.1	medwmB306