Cla003560 (gene) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTCAAGTCAAGCTTGAGGTGCCAAAGAATGAAGGGATGATAAGCACACAAGGAAAGAACTCAAAATCTCTCGTCTTACGCTATGTCCCTCTATCTCGACGCAAGAAACGAGAATCACCATTTGCAGAATTCTCCAAAAATCTAATGATCGGAGATGTCGAAATTTTGAAAGAGAGTTTCACTACACCGCTTACAAAGATGGATAAGAGTGACATCAAAAACACCGAGACAGAGCAAGCTAAGGCAACTCTGCCAGAAAAACGAACAGAGGATGGCTTCGATCCAAAGGCACATAGGCTACTGGCAAATGCAGGTTATGATTTCAAGGCTCATACTGAGTTTAAAACCCTGAAGATATCTGATGAAAGACCAAAACTCTCCCCTACTCAAAGGAAGCTTCAGAAAGAAGGGTATACTATCCCTTATTCAAGGGCCAAACTTGGATATAATCCCCCGAAGCCGATTCGTATAACCAGAAAAGGAAAAGCAAAGATTACAAATACATGTCACAATACTGTGGAAGAAAGCAATGACTCTAAAGAAGACAAGAGAAGTGAAGGTCAGGGAAAGTCTGCCTTTAGTCGTATTACTCCTTCTGTGGCACGTCCGTCAGTTTTTCAAAGGCTGAGTATGCTTGGGGGTGAAAATAAAGAACGACAACTTCTCATACCCGACTTTCTGCGTTTCAGAGGTTAA ATGACTCAAGTCAAGCTTGAGGTGCCAAAGAATGAAGGGATGATAAGCACACAAGGAAAGAACTCAAAATCTCTCGTCTTACGCTATGTCCCTCTATCTCGACGCAAGAAACGAGAATCACCATTTGCAGAATTCTCCAAAAATCTAATGATCGGAGATGTCGAAATTTTGAAAGAGAGTTTCACTACACCGCTTACAAAGATGGATAAGAGTGACATCAAAAACACCGAGACAGAGCAAGCTAAGGCAACTCTGCCAGAAAAACGAACAGAGGATGGCTTCGATCCAAAGGCACATAGGCTACTGGCAAATGCAGGTTATGATTTCAAGGCTCATACTGAGTTTAAAACCCTGAAGATATCTGATGAAAGACCAAAACTCTCCCCTACTCAAAGGAAGCTTCAGAAAGAAGGGTATACTATCCCTTATTCAAGGGCCAAACTTGGATATAATCCCCCGAAGCCGATTCGTATAACCAGAAAAGGAAAAGCAAAGATTACAAATACATGTCACAATACTGTGGAAGAAAGCAATGACTCTAAAGAAGACAAGAGAAGTGAAGGTCAGGGAAAGTCTGCCTTTAGTCGTATTACTCCTTCTGTGGCACGTCCGTCAGTTTTTCAAAGGCTGAGTATGCTTGGGGGTGAAAATAAAGAACGACAACTTCTCATACCCGACTTTCTGCGTTTCAGAGGTTAA ATGACTCAAGTCAAGCTTGAGGTGCCAAAGAATGAAGGGATGATAAGCACACAAGGAAAGAACTCAAAATCTCTCGTCTTACGCTATGTCCCTCTATCTCGACGCAAGAAACGAGAATCACCATTTGCAGAATTCTCCAAAAATCTAATGATCGGAGATGTCGAAATTTTGAAAGAGAGTTTCACTACACCGCTTACAAAGATGGATAAGAGTGACATCAAAAACACCGAGACAGAGCAAGCTAAGGCAACTCTGCCAGAAAAACGAACAGAGGATGGCTTCGATCCAAAGGCACATAGGCTACTGGCAAATGCAGGTTATGATTTCAAGGCTCATACTGAGTTTAAAACCCTGAAGATATCTGATGAAAGACCAAAACTCTCCCCTACTCAAAGGAAGCTTCAGAAAGAAGGGTATACTATCCCTTATTCAAGGGCCAAACTTGGATATAATCCCCCGAAGCCGATTCGTATAACCAGAAAAGGAAAAGCAAAGATTACAAATACATGTCACAATACTGTGGAAGAAAGCAATGACTCTAAAGAAGACAAGAGAAGTGAAGGTCAGGGAAAGTCTGCCTTTAGTCGTATTACTCCTTCTGTGGCACGTCCGTCAGTTTTTCAAAGGCTGAGTATGCTTGGGGGTGAAAATAAAGAACGACAACTTCTCATACCCGACTTTCTGCGTTTCAGAGGTTAA MTQVKLEVPKNEGMISTQGKNSKSLVLRYVPLSRRKKRESPFAEFSKNLMIGDVEILKESFTTPLTKMDKSDIKNTETEQAKATLPEKRTEDGFDPKAHRLLANAGYDFKAHTEFKTLKISDERPKLSPTQRKLQKEGYTIPYSRAKLGYNPPKPIRITRKGKAKITNTCHNTVEESNDSKEDKRSEGQGKSAFSRITPSVARPSVFQRLSMLGGENKERQLLIPDFLRFRG
BLAST of Cla003560 vs. TrEMBL
Match: A5C5C0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007094 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17 Identity = 67/205 (32.68%), Postives = 105/205 (51.22%), Query Frame = 1
BLAST of Cla003560 vs. TrEMBL
Match: B0F6T3_CUCSA (Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13 Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 1
BLAST of Cla003560 vs. TrEMBL
Match: A0A0J8CB77_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g111360 PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 3.5e-13 Identity = 63/191 (32.98%), Postives = 98/191 (51.31%), Query Frame = 1
BLAST of Cla003560 vs. TrEMBL
Match: A0A0K9QLX7_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_164230 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 4.0e-09 Identity = 65/214 (30.37%), Postives = 104/214 (48.60%), Query Frame = 1
BLAST of Cla003560 vs. TrEMBL
Match: A0A0K9QEF1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_188210 PE=4 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 6.9e-09 Identity = 52/155 (33.55%), Postives = 80/155 (51.61%), Query Frame = 1
BLAST of Cla003560 vs. NCBI nr
Match: gi|778660504|ref|XP_011656345.1| (PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus]) HSP 1 Score: 226.9 bits (577), Expect = 3.7e-56 Identity = 121/218 (55.50%), Postives = 158/218 (72.48%), Query Frame = 1
BLAST of Cla003560 vs. NCBI nr
Match: gi|659124357|ref|XP_008462116.1| (PREDICTED: uncharacterized protein LOC103500544 [Cucumis melo]) HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40 Identity = 83/136 (61.03%), Postives = 103/136 (75.74%), Query Frame = 1
BLAST of Cla003560 vs. NCBI nr
Match: gi|659099164|ref|XP_008450461.1| (PREDICTED: uncharacterized protein LOC103492056 [Cucumis melo]) HSP 1 Score: 132.5 bits (332), Expect = 9.5e-28 Identity = 64/116 (55.17%), Postives = 85/116 (73.28%), Query Frame = 1
BLAST of Cla003560 vs. NCBI nr
Match: gi|659113191|ref|XP_008456446.1| (PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo]) HSP 1 Score: 131.3 bits (329), Expect = 2.1e-27 Identity = 67/120 (55.83%), Postives = 87/120 (72.50%), Query Frame = 1
BLAST of Cla003560 vs. NCBI nr
Match: gi|778697752|ref|XP_011654390.1| (PREDICTED: uncharacterized protein LOC105435379 [Cucumis sativus]) HSP 1 Score: 123.6 bits (309), Expect = 4.4e-25 Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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