Cla003560 (gene) Watermelon (97103) v1

NameCla003560
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGypsy-like retrotransposase (AHRD V1 *-*- B0F6T3_CUCSA)
LocationChr1 : 14482210 .. 14482908 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCAAGTCAAGCTTGAGGTGCCAAAGAATGAAGGGATGATAAGCACACAAGGAAAGAACTCAAAATCTCTCGTCTTACGCTATGTCCCTCTATCTCGACGCAAGAAACGAGAATCACCATTTGCAGAATTCTCCAAAAATCTAATGATCGGAGATGTCGAAATTTTGAAAGAGAGTTTCACTACACCGCTTACAAAGATGGATAAGAGTGACATCAAAAACACCGAGACAGAGCAAGCTAAGGCAACTCTGCCAGAAAAACGAACAGAGGATGGCTTCGATCCAAAGGCACATAGGCTACTGGCAAATGCAGGTTATGATTTCAAGGCTCATACTGAGTTTAAAACCCTGAAGATATCTGATGAAAGACCAAAACTCTCCCCTACTCAAAGGAAGCTTCAGAAAGAAGGGTATACTATCCCTTATTCAAGGGCCAAACTTGGATATAATCCCCCGAAGCCGATTCGTATAACCAGAAAAGGAAAAGCAAAGATTACAAATACATGTCACAATACTGTGGAAGAAAGCAATGACTCTAAAGAAGACAAGAGAAGTGAAGGTCAGGGAAAGTCTGCCTTTAGTCGTATTACTCCTTCTGTGGCACGTCCGTCAGTTTTTCAAAGGCTGAGTATGCTTGGGGGTGAAAATAAAGAACGACAACTTCTCATACCCGACTTTCTGCGTTTCAGAGGTTAA

mRNA sequence

ATGACTCAAGTCAAGCTTGAGGTGCCAAAGAATGAAGGGATGATAAGCACACAAGGAAAGAACTCAAAATCTCTCGTCTTACGCTATGTCCCTCTATCTCGACGCAAGAAACGAGAATCACCATTTGCAGAATTCTCCAAAAATCTAATGATCGGAGATGTCGAAATTTTGAAAGAGAGTTTCACTACACCGCTTACAAAGATGGATAAGAGTGACATCAAAAACACCGAGACAGAGCAAGCTAAGGCAACTCTGCCAGAAAAACGAACAGAGGATGGCTTCGATCCAAAGGCACATAGGCTACTGGCAAATGCAGGTTATGATTTCAAGGCTCATACTGAGTTTAAAACCCTGAAGATATCTGATGAAAGACCAAAACTCTCCCCTACTCAAAGGAAGCTTCAGAAAGAAGGGTATACTATCCCTTATTCAAGGGCCAAACTTGGATATAATCCCCCGAAGCCGATTCGTATAACCAGAAAAGGAAAAGCAAAGATTACAAATACATGTCACAATACTGTGGAAGAAAGCAATGACTCTAAAGAAGACAAGAGAAGTGAAGGTCAGGGAAAGTCTGCCTTTAGTCGTATTACTCCTTCTGTGGCACGTCCGTCAGTTTTTCAAAGGCTGAGTATGCTTGGGGGTGAAAATAAAGAACGACAACTTCTCATACCCGACTTTCTGCGTTTCAGAGGTTAA

Coding sequence (CDS)

ATGACTCAAGTCAAGCTTGAGGTGCCAAAGAATGAAGGGATGATAAGCACACAAGGAAAGAACTCAAAATCTCTCGTCTTACGCTATGTCCCTCTATCTCGACGCAAGAAACGAGAATCACCATTTGCAGAATTCTCCAAAAATCTAATGATCGGAGATGTCGAAATTTTGAAAGAGAGTTTCACTACACCGCTTACAAAGATGGATAAGAGTGACATCAAAAACACCGAGACAGAGCAAGCTAAGGCAACTCTGCCAGAAAAACGAACAGAGGATGGCTTCGATCCAAAGGCACATAGGCTACTGGCAAATGCAGGTTATGATTTCAAGGCTCATACTGAGTTTAAAACCCTGAAGATATCTGATGAAAGACCAAAACTCTCCCCTACTCAAAGGAAGCTTCAGAAAGAAGGGTATACTATCCCTTATTCAAGGGCCAAACTTGGATATAATCCCCCGAAGCCGATTCGTATAACCAGAAAAGGAAAAGCAAAGATTACAAATACATGTCACAATACTGTGGAAGAAAGCAATGACTCTAAAGAAGACAAGAGAAGTGAAGGTCAGGGAAAGTCTGCCTTTAGTCGTATTACTCCTTCTGTGGCACGTCCGTCAGTTTTTCAAAGGCTGAGTATGCTTGGGGGTGAAAATAAAGAACGACAACTTCTCATACCCGACTTTCTGCGTTTCAGAGGTTAA

Protein sequence

MTQVKLEVPKNEGMISTQGKNSKSLVLRYVPLSRRKKRESPFAEFSKNLMIGDVEILKESFTTPLTKMDKSDIKNTETEQAKATLPEKRTEDGFDPKAHRLLANAGYDFKAHTEFKTLKISDERPKLSPTQRKLQKEGYTIPYSRAKLGYNPPKPIRITRKGKAKITNTCHNTVEESNDSKEDKRSEGQGKSAFSRITPSVARPSVFQRLSMLGGENKERQLLIPDFLRFRG
BLAST of Cla003560 vs. TrEMBL
Match: A5C5C0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007094 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 67/205 (32.68%), Postives = 105/205 (51.22%), Query Frame = 1

Query: 24  SLVLRYVPLSRRKKRESPFAEFS-----KNLMIGDVEILKESFTTPLTKMD-------KS 83
           S V + +P SRR + + PF E       + L  GD+++LKE  T  L  +        + 
Sbjct: 183 SPVFKCIPRSRRSEGQPPFIEDKSEVQPRRLENGDLQVLKEVVTILLPNLQLIFRDDTQK 242

Query: 84  DIKNTETEQAKATLPEKRTEDGFDPKAHRLLANAGYDFKAHTEFKTLKISDERPK---LS 143
            IK+   +  K   P K+ ++GF+PKA++LLA AGYDF + ++   L       K   L+
Sbjct: 243 SIKSLRDQTKKELFPIKKIDEGFNPKAYKLLAKAGYDFISSSQLGELSPETTGXKMHGLN 302

Query: 144 PTQRKLQKEGYTIPYSRAKLGYNPPKPIRITRKGKAKITNTCHNTVEESNDSKEDKRSEG 203
            TQRKL+++GY + +S   LG+ P +PI+I+ K K    +T H  VE  ++S     +  
Sbjct: 303 ETQRKLKQQGYAVKHSMEGLGFIPFEPIKISTKTKKTKASTQHIIVEYMDESSXS--NSP 362

Query: 204 QGKSAFSRITPSVARPSVFQRLSML 214
              S F +I   + +  VF RL  L
Sbjct: 363 PQISVFDQIEAPIVQALVFTRLGNL 385

BLAST of Cla003560 vs. TrEMBL
Match: B0F6T3_CUCSA (Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 1

Query: 14  MISTQGKNSKSLVLRYVPLSRRKKRESPFAEFSKNLMIGDVEILKESFTTPLTKMDKSDI 73
           MI      S   VL YVP SRR K ES F E  K+L +GD+++LKESFTTPLTK+ K +I
Sbjct: 1   MILKDENASNPSVLHYVPPSRRMKGESSFVESPKDLKVGDIKVLKESFTTPLTKIMKQEI 60

Query: 74  KNTETEQAKATLPEKRTEDGFDPKAHRLLANAGYDFKAHTE 115
           K    E+    LP++R +D FD KA +L+A AG   K + E
Sbjct: 61  KIDLMEE---NLPQRRMKDKFDSKACKLMAKAGVCKKKNVE 98

BLAST of Cla003560 vs. TrEMBL
Match: A0A0J8CB77_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g111360 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.5e-13
Identity = 63/191 (32.98%), Postives = 98/191 (51.31%), Query Frame = 1

Query: 32  LSRRKKRESPFAEFSKN--------LMIGDVEILKESFTTPLTKMDKSDIKNTETE--QA 91
           +SRRKK +SPFA+   N              +++ E  T P+ ++  S I +      + 
Sbjct: 1   MSRRKKGQSPFAQCGGNEAKTKPVPAQGERKQVISERMTLPVQRISDSKISSVPLPGFEK 60

Query: 92  KATLPEKRTEDGFDPKAHRLLANAGYDFKAHTEFKTLKISDERPKLSPTQRKLQKEGYTI 151
            +  P  R E GFDP A++L+ N+GYDF ++ E     I  +   LS TQ+ LQK+G  +
Sbjct: 61  SSETPSARKE-GFDPVAYKLMENSGYDF-SNPEPMGKVIEAKAYGLSKTQQNLQKQGERV 120

Query: 152 PYSRAKLGYNPPKPIRITRKGKAKITNTCHNTVEESNDSKEDKRSEGQGKSAFSRITPSV 211
              +  LG+   KP+RIT + +  I  T +  VEE  +S+ +     + +S F RI P+ 
Sbjct: 121 FVKKVGLGFTESKPVRITAR-RRPIQATQYIAVEELEESEGENTLPIKMESVFDRIKPAS 180

BLAST of Cla003560 vs. TrEMBL
Match: A0A0K9QLX7_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_164230 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.0e-09
Identity = 65/214 (30.37%), Postives = 104/214 (48.60%), Query Frame = 1

Query: 2   TQVKLEVPKNE---GMISTQGKNSKSLVLRYVPLSRRKKRESPFAEFSKNLMIGDVEILK 61
           T  KL + ++E     +  QG N      R +  + +K ++ P  EF K++ +    + K
Sbjct: 303 TMTKLGITESELTESRLMIQGFNLGGQ--RAIETTSKKVKDMP-QEFDKSMTL---PVHK 362

Query: 62  ESFTTPLTKMDKSDIKNTETEQAKATLPEKRTEDGFDPKAHRLLANAGYDFKAHTEFKTL 121
            S    LT    +  K+ ET  ++        +DGFDP A+ L+  +GYDF ++ E    
Sbjct: 363 ISDPKILTSPTPNSTKSPETPSSR--------KDGFDPVAYNLMEISGYDF-SNLEPMGK 422

Query: 122 KISDERPKLSPTQRKLQKEGYTIPYSRAKLGYNPPKPIRITRKGKAKITNTCHNTVEESN 181
            + D+   L+ TQ+KLQ++G  +   R  LG+   KPI I+ + ++   +     +EES 
Sbjct: 423 LVEDKSYGLNKTQQKLQQQGERVWVKRVGLGFKESKPIVISGRRRSMQASQWSQEIEESV 482

Query: 182 DSKEDKRSEGQGKSAFSRITPS--VARPSVFQRL 211
           D   +     Q +S F RI PS   AR SVF RL
Sbjct: 483 DENFEPI---QKESIFDRIHPSSAKARSSVFDRL 498

BLAST of Cla003560 vs. TrEMBL
Match: A0A0K9QEF1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_188210 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.9e-09
Identity = 52/155 (33.55%), Postives = 80/155 (51.61%), Query Frame = 1

Query: 59  ESFTTPLTKMDKSDIKNTETEQA-KATLPEKRTEDGFDPKAHRLLANAGYDFKAHTEFKT 118
           +S T P+ K+    I  + T  + K+       +DGFDP A+ L+  +GYDF ++ E   
Sbjct: 7   KSMTLPVHKISDPKILTSPTPNSTKSPETPSSRKDGFDPVAYNLMEISGYDF-SNLEPMG 66

Query: 119 LKISDERPKLSPTQRKLQKEGYTIPYSRAKLGYNPPKPIRITRKGKAKITNTCHNTVEES 178
             + D+   L+ TQ+KLQ++G  +   R  LG+   KPI I+ + ++   +     +EES
Sbjct: 67  KLVEDKSYGLNKTQQKLQQQGERVWVKRVGLGFKESKPIVISGRRRSMQASQWSQEIEES 126

Query: 179 NDSKEDKRSEGQGKSAFSRITPS--VARPSVFQRL 211
            D   +     Q +S F RI PS   AR SVF RL
Sbjct: 127 VDENFEPI---QKESIFDRIHPSSAKARSSVFDRL 157

BLAST of Cla003560 vs. NCBI nr
Match: gi|778660504|ref|XP_011656345.1| (PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 3.7e-56
Identity = 121/218 (55.50%), Postives = 158/218 (72.48%), Query Frame = 1

Query: 12  EGMISTQGKNSKSLVLRYVPLSRRKKRESPFAEFSKNLMIGDVEILKESFTTPLTKMDKS 71
           +GMI      + + VLRYVPLSRRKK ESPF E  K L +GD+EI+KESFTTPLTK+ K 
Sbjct: 417 KGMILKDENAANTPVLRYVPLSRRKKGESPFMESPKGLKVGDIEIIKESFTTPLTKIAKQ 476

Query: 72  DIKNTETEQAKATLPEKRTEDGFDPKAHRLLANAGYDFKAHTEFKTLKISDERPKLSPTQ 131
           ++K    +  +A LP++RT+DGFDPKA++L+A AGYDF AHTEFK+L+I D RP+LS TQ
Sbjct: 477 EVK---VDLVEANLPQRRTKDGFDPKAYKLMAKAGYDFTAHTEFKSLEIHD-RPELSSTQ 536

Query: 132 RKLQKEGYTIPYSRAKLGYNPPKPIRITRKGKAKITNTCHNTVEESNDSKEDKRSEGQGK 191
           +KL +EG++IP SR  LGY  P+PIRIT+KGK K+ +  H T+EE +D+ + K  + Q  
Sbjct: 537 KKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEE-DDNTDVKEGDNQRI 596

Query: 192 SAFSRITPSVARPSVFQRLSMLGGENKERQLLIPDFLR 230
           S F RI PSVARP VF+RLSM   E +ER   +P+  R
Sbjct: 597 SVFDRIRPSVARPVVFERLSMTEAE-RERLQSVPNLER 628

BLAST of Cla003560 vs. NCBI nr
Match: gi|659124357|ref|XP_008462116.1| (PREDICTED: uncharacterized protein LOC103500544 [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 83/136 (61.03%), Postives = 103/136 (75.74%), Query Frame = 1

Query: 77  ETEQAKATLPEKRTEDGFDPKAHRLLANAGYDFKAHTEFKTLKISDERPKLSPTQRKLQK 136
           E    +A LPE+RT +GFDPKA++L+A AGYDF   TE K++KI DERP+LSPTQ+KLQK
Sbjct: 517 EKNDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPELSPTQKKLQK 576

Query: 137 EGYTIPYSRAKLGYNPPKPIRITRKGKAKITNTCHNTVEESNDSKEDKRSEGQGKSAFSR 196
           +GY+IP S+A +GY   +P+RIT KGK K+ NTCH TVEES DSKE K+  GQ  S F R
Sbjct: 577 QGYSIPNSKAGIGYQSSEPVRITGKGKTKVANTCHITVEESKDSKEGKKDRGQRSSVFDR 636

Query: 197 ITPSVARPSVFQRLSM 213
           I  S  RPSVFQR+S+
Sbjct: 637 IAFSAIRPSVFQRVSI 652

BLAST of Cla003560 vs. NCBI nr
Match: gi|659099164|ref|XP_008450461.1| (PREDICTED: uncharacterized protein LOC103492056 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 9.5e-28
Identity = 64/116 (55.17%), Postives = 85/116 (73.28%), Query Frame = 1

Query: 2   TQVKLEVPKNEGMISTQGKNSKSLVLRYVPLSRRKKRESPFAEFSKNLMIGDVEILKESF 61
           T++KL  PK E + + Q + S   VLRY+PLSRR+K ESPFAE SKNL + + EILKE+F
Sbjct: 23  TEIKLRAPKAEKIATLQKEVSNPTVLRYIPLSRREKGESPFAECSKNLTVKNTEILKENF 82

Query: 62  TTPLTKMDKSDIKNTETEQAKATLPEKRTEDGFDPKAHRLLANAGYDFKAHTEFKT 118
           T PLTK++K + K  E +  +A LPE+RT +GFDPKA++L+A AGYDF   TE K+
Sbjct: 83  TAPLTKIEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKS 138

BLAST of Cla003560 vs. NCBI nr
Match: gi|659113191|ref|XP_008456446.1| (PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 2.1e-27
Identity = 67/120 (55.83%), Postives = 87/120 (72.50%), Query Frame = 1

Query: 4   VKLEVPKNEGMIST-------QGKNSKSLVLRYVPLSRRKKRESPFAEFSKNLMIGDVEI 63
           V +EVP +E   ST         K S   +LRYVPLSRRKK ESPF E S+ L +GD+E+
Sbjct: 170 VSVEVPISEASTSTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESSQALKVGDIEV 229

Query: 64  LKESFTTPLTKMDKSDIKNTETEQAKATLPEKRTEDGFDPKAHRLLANAGYDFKAHTEFK 117
           L+ESFTTPLTK+ K +   T+T+Q +A+LP++RT+DGFDPKA++L+A AGYDF  H EFK
Sbjct: 230 LRESFTTPLTKITKQE---TKTDQTEASLPQRRTKDGFDPKAYKLMAKAGYDFTTHIEFK 286

BLAST of Cla003560 vs. NCBI nr
Match: gi|778697752|ref|XP_011654390.1| (PREDICTED: uncharacterized protein LOC105435379 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 4.4e-25
Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 1

Query: 2   TQVKLEVPKNEGMISTQGKNSKSLVLRYVPLSRRKKRESPFAEFSKNLMIGDVEILKESF 61
           TQ K EVPK+E +   Q K +K  +LRYVPLSRRK  ES   E+ +NLMIG +EIL+ESF
Sbjct: 158 TQAKSEVPKSEKITLPQEKATKPPILRYVPLSRRKNGESSITEYPENLMIGSIEILEESF 217

Query: 62  TTPLTKMDKSDIKNTETEQAKATLPEKRTEDGFDPKAHRLLANAGYDFKAHTEFKTLKIS 121
           TTPLTK++K + K  +T+  +A LP++R   GFD KA+ L+A  GYDF      K L  +
Sbjct: 218 TTPLTKIEKGETKRLKTKSVEAFLPKRRITGGFDQKAYTLMAKVGYDFTTLVNLKVLNTT 277

Query: 122 DER-PKLSPT 131
            ++    SPT
Sbjct: 278 SKKIESASPT 287

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A5C5C0_VITVI1.8e-1732.68Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007094 PE=4 SV=1[more]
B0F6T3_CUCSA1.2e-1348.51Gypsy-like retrotransposase OS=Cucumis sativus PE=4 SV=1[more]
A0A0J8CB77_BETVU3.5e-1332.98Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g111360 PE=4 S... [more]
A0A0K9QLX7_SPIOL4.0e-0930.37Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_164230 PE=4 SV=1[more]
A0A0K9QEF1_SPIOL6.9e-0933.55Uncharacterized protein OS=Spinacia oleracea GN=SOVF_188210 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778660504|ref|XP_011656345.1|3.7e-5655.50PREDICTED: uncharacterized protein LOC105435721 isoform X1 [Cucumis sativus][more]
gi|659124357|ref|XP_008462116.1|2.9e-4061.03PREDICTED: uncharacterized protein LOC103500544 [Cucumis melo][more]
gi|659099164|ref|XP_008450461.1|9.5e-2855.17PREDICTED: uncharacterized protein LOC103492056 [Cucumis melo][more]
gi|659113191|ref|XP_008456446.1|2.1e-2755.83PREDICTED: uncharacterized protein LOC103496389 [Cucumis melo][more]
gi|778697752|ref|XP_011654390.1|4.4e-2549.23PREDICTED: uncharacterized protein LOC105435379 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003560Cla003560.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None