Cla003532 (gene) Watermelon (97103) v1

Overview
NameCla003532
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 13983682 .. 13985072 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAGGTGGGATTTTTCCCTGAAGAAGCCCTAGTGCCGCCATACATCGCCGAAATAATTGACCACCACGGCTGGAGACACTTCTGTTCCAGCACCCCTTGGATCCAACCTGAAGTAGTCCGAGATTTTTATAACGGACGCATAGACGAAGAGGAGGACGTGGTGGTGGTGGTGGATGAAACTGAAGTCCCATTCAACGCAAGAGAAATCAACGCTATATATGAGTTGAGGGACAACCCGAATGCGGAAGGAAATAAGATTATAGAATCAACTCCAACGGAGTTAATAGAGGACGCAATCTGGGTAATGGCAAAGCCAGGGGCTAAGTGGGATGTTTCACCCACAGGTATAAAAACGCTATCAGCAAGCAACCTAACACCAGAGGCAAACCTGTGGGTGTATTTGGTGAAGAAGCGGTTGATCCCTACAACGCATGATAAGACAGTATCAAGGGATCGAGTGATGACAGTATCAAGGGATCGAGTGAAGAAGCGGTTGATCCCTACAGCTCCTCATCCTCTTCTATTTGCAGCTCTCTCTCGAGCTCCTCAACTGCTTTTTCTATTCTTTCTTCTTCCCTCATTTCCTCTTCAATTGCCATTGCGGCTTCGTCTGTTTGAGGATCAGGAAGGCCTTGCGTTTCACAATCTTCTTGAGGCCGCACTTCGCTACGCGCCTCCTTGTTGGACAATGCGTCATTAGCAATTTTCTCTGCTCCTTTTCTGAGGGCCCTGAGCTCTTTTCTCAACTTGGCCCTTTTCTTTTTCATCTTTGCTGCCATCCTATCGAAAGATGTTGCCGCAATTAGGGACTCAGGACCGTCTCCTTGCGCTGCACTTTTAGGCTCTTCATCCTCGGCAGTTTCTTGTGATACCCTTCTTTTCTTCCTTAACAAGGGTACCACTTCCTCTTCCTCTTCTCTTCCTCTCTTGGCCTCTACGGCCAATACGACCTTTCTAATAGGTCCTTCATTGGAGTCCAGGGTCATCTCCTCAGGACTGATAGATGCAGGGACAGACCCTTGCGTTTCATGTGGCTCGCCTACGACCTCCTTGCTGTAGGCAACTTCTCCTTCCTTGTCTCCCCCATTCTTTTCACCCTCCTGAGTCTCTCTTGACTGACTCTGGACTTCTCTTATCAGCGAGGGTGATTCCATTCTTGCGTCTGAGACGGTTGCGTCCATTGGGTCACGCAATCCGCTCAGGAATTCGGCTATTCATACGTCTGGGGATCGTGCGGAGTTCACTTCCCCTACTGTGACAGCCACTTCTTCAACTTTTCCTCTCCCCATCTCTTCGGTCTCTCTTGTGCTAGGTGGACGCGATAGGGGCAAGGGCTGGTTGACCTCCCCGTCATCCTCCCTACCCTTTGCTTCCCTTTCTTCCTGA

mRNA sequence

ATGATTGAGGTGGGATTTTTCCCTGAAGAAGCCCTAGTGCCGCCATACATCGCCGAAATAATTGACCACCACGGCTGGAGACACTTCTGTTCCAGCACCCCTTGGATCCAACCTGAAGTAGTCCGAGATTTTTATAACGGACGCATAGACGAAGAGGAGGACGTGGTGGTGGTGGTGGATGAAACTGAAGTCCCATTCAACGCAAGAGAAATCAACGCTATATATGAGTTGAGGGACAACCCGAATGCGGAAGGAAATAAGATTATAGAATCAACTCCAACGGAGTTAATAGAGGACGCAATCTGGGTAATGGCAAAGCCAGGGGCTAAGTGGGATGTTTCACCCACAGGTATAAAAACGCTATCAGCAAGCAACCTAACACCAGAGGCAAACCTGTGGGTGTATTTGGTGAAGAAGCGGTTGATCCCTACAACGCATGATAAGACAGTATCAAGGGATCGAGTGATGACAGTATCAAGGGATCGAGTGAAGAAGCGGTTGATCCCTACAGCTCCTCATCCTCTTCTATTTGCAGCTCTCTCTCGAGCTCCTCAACTGCTTTTTCTATTCTTTCTTCTTCCCTCATTTCCTCTTCAATTGCCATTGCGGCTTCATGTTGCCGCAATTAGGGACTCAGGACCGTCTCCTTGCGCTGCACTTTTAGGCTCTTCATCCTCGGCAGTTTCTTGTGATACCCTTCTTTTCTTCCTTAACAAGGGTACCACTTCCTCTTCCTCTTCTCTTCCTCTCTTGGCCTCTACGGCCAATACGACCTTTCTAATAGGTCCTTCATTGGAGTCCAGGGTCATCTCCTCAGGACTGATAGATGCAGGGACAGACCCTTGCGTTTCATGTGGCTCGCCTACGACCTCCTTGCTCGAGGGTGATTCCATTCTTGCGTCTGAGACGGTTGCGTCCATTGGGTCACGCAATCCGCTCAGGAATTCGGCTATTCATACGTCTGGGGATCGTGCGGAGTTCACTTCCCCTACTGTGACAGCCACTTCTTCAACTTTTCCTCTCCCCATCTCTTCGGTCTCTCTTGTGCTAGGTGGACGCGATAGGGGCAAGGGCTGGTTGACCTCCCCGTCATCCTCCCTACCCTTTGCTTCCCTTTCTTCCTGA

Coding sequence (CDS)

ATGATTGAGGTGGGATTTTTCCCTGAAGAAGCCCTAGTGCCGCCATACATCGCCGAAATAATTGACCACCACGGCTGGAGACACTTCTGTTCCAGCACCCCTTGGATCCAACCTGAAGTAGTCCGAGATTTTTATAACGGACGCATAGACGAAGAGGAGGACGTGGTGGTGGTGGTGGATGAAACTGAAGTCCCATTCAACGCAAGAGAAATCAACGCTATATATGAGTTGAGGGACAACCCGAATGCGGAAGGAAATAAGATTATAGAATCAACTCCAACGGAGTTAATAGAGGACGCAATCTGGGTAATGGCAAAGCCAGGGGCTAAGTGGGATGTTTCACCCACAGGTATAAAAACGCTATCAGCAAGCAACCTAACACCAGAGGCAAACCTGTGGGTGTATTTGGTGAAGAAGCGGTTGATCCCTACAACGCATGATAAGACAGTATCAAGGGATCGAGTGATGACAGTATCAAGGGATCGAGTGAAGAAGCGGTTGATCCCTACAGCTCCTCATCCTCTTCTATTTGCAGCTCTCTCTCGAGCTCCTCAACTGCTTTTTCTATTCTTTCTTCTTCCCTCATTTCCTCTTCAATTGCCATTGCGGCTTCATGTTGCCGCAATTAGGGACTCAGGACCGTCTCCTTGCGCTGCACTTTTAGGCTCTTCATCCTCGGCAGTTTCTTGTGATACCCTTCTTTTCTTCCTTAACAAGGGTACCACTTCCTCTTCCTCTTCTCTTCCTCTCTTGGCCTCTACGGCCAATACGACCTTTCTAATAGGTCCTTCATTGGAGTCCAGGGTCATCTCCTCAGGACTGATAGATGCAGGGACAGACCCTTGCGTTTCATGTGGCTCGCCTACGACCTCCTTGCTCGAGGGTGATTCCATTCTTGCGTCTGAGACGGTTGCGTCCATTGGGTCACGCAATCCGCTCAGGAATTCGGCTATTCATACGTCTGGGGATCGTGCGGAGTTCACTTCCCCTACTGTGACAGCCACTTCTTCAACTTTTCCTCTCCCCATCTCTTCGGTCTCTCTTGTGCTAGGTGGACGCGATAGGGGCAAGGGCTGGTTGACCTCCCCGTCATCCTCCCTACCCTTTGCTTCCCTTTCTTCCTGA

Protein sequence

MIEVGFFPEEALVPPYIAEIIDHHGWRHFCSSTPWIQPEVVRDFYNGRIDEEEDVVVVVDETEVPFNAREINAIYELRDNPNAEGNKIIESTPTELIEDAIWVMAKPGAKWDVSPTGIKTLSASNLTPEANLWVYLVKKRLIPTTHDKTVSRDRVMTVSRDRVKKRLIPTAPHPLLFAALSRAPQLLFLFFLLPSFPLQLPLRLHVAAIRDSGPSPCAALLGSSSSAVSCDTLLFFLNKGTTSSSSSLPLLASTANTTFLIGPSLESRVISSGLIDAGTDPCVSCGSPTTSLLEGDSILASETVASIGSRNPLRNSAIHTSGDRAEFTSPTVTATSSTFPLPISSVSLVLGGRDRGKGWLTSPSSSLPFASLSS
Homology
[Close]
BLAST of Cla003532 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.0e-15
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 1 

Query: 14  PPYIAEIIDHHGWRHFCSSTPWIQPEVVRDFYNGRIDEEEDVVVVVDETEVPFNAREINA 73
           P +I  +I  HGWR FC         +VR+FY   +D  ++ V V    +VPF AR IN+
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFV-QNVKVPFTARAINS 63

Query: 74  IYELRDNPNAEGNKIIESTPTELIEDAIWVMAKPGAKWDVSPTGIKTLSASNLTPEANLW 133
           I+ L +  +   +   E T  +L E  +  +A  GA W +SP G  T     L   A +W
Sbjct: 64  IFGLEEVVDEYVDFASEVTDEQL-EVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIW 123

Query: 134 VYLVKKRLIPTTHDKTVSRDRVM 157
            + +  R +P+TH KTV++DRV+
Sbjct: 124 YHFLTARFMPSTHGKTVAKDRVL 144

[Close]
BLAST of Cla003532 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 43/145 (29.66%), Postives = 76/145 (52.41%), Query Frame = 1 

Query: 14  PPYIAEIIDHHGWRHFCSSTPWIQPEV--VRDFYNGRIDEEEDVVVVVDETEVPFNAREI 73
           P +I+++I   GW+ FC     I P V  V++FY   +  +    V V E ++ F +  I
Sbjct: 76  PGFISDVIISRGWQIFCRHP--IDPIVPLVKEFY-ANLQNQGQNTVFVWEIDITFTSNYI 135

Query: 74  NAIYELRDNPNAEGNKIIESTPTELIEDAIWVMAKPGAKWDVSPTGIKTLSASNLTPEAN 133
           N +  +  N + E  ++I     E +++ +  +A  GA+W +S  G  T +   L P A 
Sbjct: 136 NGVLGI-PNQDDEFVELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAK 195

Query: 134 LWVYLVKKRLIPTTHDKTVSRDRVM 157
           +W + +  RL+ +TH KT+SR+R +
Sbjct: 196 VWYHFLASRLLLSTHGKTISRNRAI 216

[Close]
BLAST of Cla003532 vs. TrEMBL
Match: A0A061FWG2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_013502 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 39/140 (27.86%), Postives = 66/140 (47.14%), Query Frame = 1 

Query: 20  IIDHHGWRHFCSSTPWIQPEVVRDFYNGRIDEEEDVVVVVDETEVPFNAREINAIYELRD 79
           +ID   W++FC+S       +VR+FY   ++   D V    +  VPF++  IN  YE  D
Sbjct: 1   MIDKRPWQNFCASLAATNIPLVREFYANAVEATYDFVFGRSKL-VPFSSHAINEFYETTD 60

Query: 80  -NPNAEGNKIIESTPTELIEDAIWVMAKPGAKWDVSPTGIKTLSASNLTPEANLWVYLVK 139
              N  G  + E    E  +D I ++ +  A+         +   + + P   +W+Y V 
Sbjct: 61  IKSNGYGQYLGEH---EDWDDIIHILYEESAQCRFFNNTPVSFKKNVMKPTYKIWLYFVA 120

Query: 140 KRLIPTTHDKTVSRDRVMTV 159
            +L+PTTH   V +DR + +
Sbjct: 121 SKLLPTTHTSNVMKDRAIPI 136

[Close]
BLAST of Cla003532 vs. TrEMBL
Match: A0A061FAJ6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.7e-06
Identity = 44/152 (28.95%), Postives = 70/152 (46.05%), Query Frame = 1 

Query: 10  EALVPPY--IAEIIDHHGWRHFCSSTPWIQPEVVRDFYNGRIDEEEDVVVVVDETEVPFN 69
           E  + PY  I ++I    W  FC     +   VVR+FY   + E  D V  V    VPF+
Sbjct: 44  EIPILPYKEINDLIRDRYWHQFCHQPNVVVVLVVREFY-ATVVEHVDGVAFVRGKHVPFH 103

Query: 70  AREINAIYELRDNPNAEGNKIIESTPTEL-IEDAIWVMAKPGAKWDVSPTGIKTLSASNL 129
           ++ IN   EL   PN E ++  +         + I  +   GA+W  S     +   S +
Sbjct: 104 SQAIN---ELLRTPNIENDEYGQYLGDHQDCNEIISTLCIEGAQWKTSHGEPVSFKRSVM 163

Query: 130 TPEANLWVYLVKKRLIPTTHDKTVSRDRVMTV 159
             E  +W++ V  RL+P+TH   V++DR + +
Sbjct: 164 KKELKVWLHFVAARLLPSTHISDVTKDRAVLI 191

[Close]
BLAST of Cla003532 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 1 

Query: 14  PPYIAEIIDHHGWRHFCSSTPWIQPEVVRDFYNGRIDEEEDVVVVVDETEVPFNAREINA 73
           P +I  +I  HGWR FC         +VR+FY   +D  ++ V V    +VPF AR IN+
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFV-QNVKVPFTARAINS 63

Query: 74  IYELRDNPNAEGNKIIESTPTELIEDAIWVMAKPGAKWDVSPTGIKTLSASNLTPEANLW 133
           I+ L +  +   +   E T  +L E  +  +A  GA W +SP G  T     L   A +W
Sbjct: 64  IFGLEEVVDEYVDFASEVTDEQL-EVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIW 123

Query: 134 VYLVKKRLIPTTHDKTVSRDRVM 157
            + +  R +P+TH KTV++DRV+
Sbjct: 124 YHFLTARFMPSTHGKTVAKDRVL 144

[Close]
BLAST of Cla003532 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 43/145 (29.66%), Postives = 76/145 (52.41%), Query Frame = 1 

Query: 14  PPYIAEIIDHHGWRHFCSSTPWIQPEV--VRDFYNGRIDEEEDVVVVVDETEVPFNAREI 73
           P +I+++I   GW+ FC     I P V  V++FY   +  +    V V E ++ F +  I
Sbjct: 76  PGFISDVIISRGWQIFCRHP--IDPIVPLVKEFY-ANLQNQGQNTVFVWEIDITFTSNYI 135

Query: 74  NAIYELRDNPNAEGNKIIESTPTELIEDAIWVMAKPGAKWDVSPTGIKTLSASNLTPEAN 133
           N +  +  N + E  ++I     E +++ +  +A  GA+W +S  G  T +   L P A 
Sbjct: 136 NGVLGI-PNQDDEFVELITDAIEEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAK 195

Query: 134 LWVYLVKKRLIPTTHDKTVSRDRVM 157
           +W + +  RL+ +TH KT+SR+R +
Sbjct: 196 VWYHFLASRLLLSTHGKTISRNRAI 216

[Close]
BLAST of Cla003532 vs. NCBI nr
Match: gi|590666924|ref|XP_007037100.1| (Uncharacterized protein TCM_013502 [Theobroma cacao])

HSP 1 Score: 61.2 bits (147), Expect = 4.3e-06
Identity = 39/140 (27.86%), Postives = 66/140 (47.14%), Query Frame = 1 

Query: 20  IIDHHGWRHFCSSTPWIQPEVVRDFYNGRIDEEEDVVVVVDETEVPFNAREINAIYELRD 79
           +ID   W++FC+S       +VR+FY   ++   D V    +  VPF++  IN  YE  D
Sbjct: 1   MIDKRPWQNFCASLAATNIPLVREFYANAVEATYDFVFGRSKL-VPFSSHAINEFYETTD 60

Query: 80  -NPNAEGNKIIESTPTELIEDAIWVMAKPGAKWDVSPTGIKTLSASNLTPEANLWVYLVK 139
              N  G  + E    E  +D I ++ +  A+         +   + + P   +W+Y V 
Sbjct: 61  IKSNGYGQYLGEH---EDWDDIIHILYEESAQCRFFNNTPVSFKKNVMKPTYKIWLYFVA 120

Query: 140 KRLIPTTHDKTVSRDRVMTV 159
            +L+PTTH   V +DR + +
Sbjct: 121 SKLLPTTHTSNVMKDRAIPI 136

[Close]
BLAST of Cla003532 vs. NCBI nr
Match: gi|590612524|ref|XP_007022408.1| (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 60.1 bits (144), Expect = 9.7e-06
Identity = 44/152 (28.95%), Postives = 70/152 (46.05%), Query Frame = 1 

Query: 10  EALVPPY--IAEIIDHHGWRHFCSSTPWIQPEVVRDFYNGRIDEEEDVVVVVDETEVPFN 69
           E  + PY  I ++I    W  FC     +   VVR+FY   + E  D V  V    VPF+
Sbjct: 44  EIPILPYKEINDLIRDRYWHQFCHQPNVVVVLVVREFY-ATVVEHVDGVAFVRGKHVPFH 103

Query: 70  AREINAIYELRDNPNAEGNKIIESTPTEL-IEDAIWVMAKPGAKWDVSPTGIKTLSASNL 129
           ++ IN   EL   PN E ++  +         + I  +   GA+W  S     +   S +
Sbjct: 104 SQAIN---ELLRTPNIENDEYGQYLGDHQDCNEIISTLCIEGAQWKTSHGEPVSFKRSVM 163

Query: 130 TPEANLWVYLVKKRLIPTTHDKTVSRDRVMTV 159
             E  +W++ V  RL+P+TH   V++DR + +
Sbjct: 164 KKELKVWLHFVAARLLPSTHISDVTKDRAVLI 191

The following BLAST results are available for this feature:
BLAST of Cla003532 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QTD9_9ROSA8.0e-1534.97Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1[more]
W9RBS1_9ROSA1.5e-0829.66Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1[more]
A0A061FWG2_THECC3.0e-0627.86Uncharacterized protein OS=Theobroma cacao GN=TCM_013502 PE=4 SV=1[more]
A0A061FAJ6_THECC6.7e-0628.95Uncharacterized protein OS=Theobroma cacao GN=TCM_032752 PE=4 SV=1[more]
BLAST of Cla003532 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703087370|ref|XP_010093253.1|1.1e-1434.97hypothetical protein L484_022412 [Morus notabilis][more]
gi|703082781|ref|XP_010092041.1|2.1e-0829.66hypothetical protein L484_000844 [Morus notabilis][more]
gi|590666924|ref|XP_007037100.1|4.3e-0627.86Uncharacterized protein TCM_013502 [Theobroma cacao][more]
gi|590612524|ref|XP_007022408.1|9.7e-0628.95Uncharacterized protein TCM_032752 [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003532Cla003532.1mRNA