Cla003529 (gene) Watermelon (97103) v1

Overview
NameCla003529
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 13853164 .. 13853349 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCCACGATTGGCAAGCTGAGCGACGATTATGACGAGCTTGTCCAAGAGAACATTGAGGTGGCGATCGTTAAGAAGCTCATTGAAGATCTCGGTCAATCATTCCGATGTGAGGTAAGCACCCTATCCACTAAAGTCTCTGACATTCAGAATTTTGTGGAGGGTGAATTGAAAGAGCTTTGA

mRNA sequence

ATGCAAGCCACGATTGGCAAGCTGAGCGACGATTATGACGAGCTTGTCCAAGAGAACATTGAGGTGGCGATCGTTAAGAAGCTCATTGAAGATCTCGGTCAATCATTCCGATGTGAGGTAAGCACCCTATCCACTAAAGTCTCTGACATTCAGAATTTTGTGGAGGGTGAATTGAAAGAGCTTTGA

Coding sequence (CDS)

ATGCAAGCCACGATTGGCAAGCTGAGCGACGATTATGACGAGCTTGTCCAAGAGAACATTGAGGTGGCGATCGTTAAGAAGCTCATTGAAGATCTCGGTCAATCATTCCGATGTGAGGTAAGCACCCTATCCACTAAAGTCTCTGACATTCAGAATTTTGTGGAGGGTGAATTGAAAGAGCTTTGA

Protein sequence

MQATIGKLSDDYDELVQENIEVAIVKKLIEDLGQSFRCEVSTLSTKVSDIQNFVEGELKEL
Homology
[Close]
BLAST of Cla003529 vs. NCBI nr
Match: gi|659083321|ref|XP_008442289.1| (PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-07
Identity = 28/62 (45.16%), Postives = 50/62 (80.65%), Query Frame = 1 

Query: 1   MQATIGKLSDDYDELVQENIEV-AIVKKLIEDLGQSFRCEVSTLSTKVSDIQNFVEGELK 60
           +Q  +G+LSD+++ELVQEN E+ ++ K++IED+G++F+ E+  L++ V+ ++ FVEGEL 
Sbjct: 58  VQLAVGRLSDNFEELVQENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELH 117

Query: 61  EL 62
           +L
Sbjct: 118 DL 119

[Close]
BLAST of Cla003529 vs. NCBI nr
Match: gi|659121350|ref|XP_008460615.1| (PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 27/62 (43.55%), Postives = 49/62 (79.03%), Query Frame = 1 

Query: 1  MQATIGKLSDDYDELVQENIEV-AIVKKLIEDLGQSFRCEVSTLSTKVSDIQNFVEGELK 60
          +Q  +G+LS++++ELVQEN E+ ++ K++IED+G++F+ E+  L++ V+ ++ FVEGEL 
Sbjct: 4  VQLAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELASTVTTLKAFVEGELH 63

Query: 61 EL 62
           L
Sbjct: 64 NL 65

[Close]
BLAST of Cla003529 vs. NCBI nr
Match: gi|659068885|ref|XP_008446938.1| (PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 7.8e-06
Identity = 26/62 (41.94%), Postives = 48/62 (77.42%), Query Frame = 1 

Query: 1   MQATIGKLSDDYDELVQENIEV-AIVKKLIEDLGQSFRCEVSTLSTKVSDIQNFVEGELK 60
           +Q  +G+LS++++ELV EN E+ ++ K++IED+G++F+ E+  L++ V+ ++ FVEGEL 
Sbjct: 58  VQLAVGRLSENFEELVLENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELH 117

Query: 61  EL 62
            L
Sbjct: 118 NL 119

The following BLAST results are available for this feature:
BLAST of Cla003529 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659083321|ref|XP_008442289.1|2.4e-0745.16PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo][more]
gi|659121350|ref|XP_008460615.1|1.6e-0643.55PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo][more]
gi|659068885|ref|XP_008446938.1|7.8e-0641.94PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003529Cla003529.1mRNA