Cla003524 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003524
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	CACTA en-spm transposon protein (AHRD V1 ***- E5GC72_CUCME)
Location	Chr1 : 13757443 .. 13758295 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTCGACGACATTTGCTCACATATGGAAGAGGCATGTGCAAACCCACCCAAGCGACTTAAATCTACCATTGAAGATTGGCATTTTTTGTGCAACAAGTTTGAGAGCCCTGAATTTAAAGTATGGTCTTACTTTACATTTATTAGTTTTTCCTCTTTATACAATCTGATGTTTCTGAAGCATATTTGTTGTATCTCTATCAGAAACTGGAAGAGACTAATAAAAAGAACCGGGTAAAACTAAAATTCAATCATCGAGTTGGCCTAAGACATTCATTAACATACAACAGGAACTGGTGAGACATCTTAAGCAAATTTGTTCCATCTCATTATCTATATTTAATCACTAAGAAACTTTACTTTTTGTGGGGTTTGGATTTTAGAGTGTGAAAGATGGCCAACAGTGTGGACCAATTGACCTATTTAAGATAACACACTCACGAGATGACCAATGGATGAACCAGGCTGCCAGTGATGCACATGTAACGTTGTTTTTCATTATGTAATATATGCTCATTTAAATATGTGTTATATATTATCACTCATTTATACTCTTTTAATTATAGGCATTGATGTTGGAATTGGAAGGGGCGTCAACTTCAGAAGGGAGTCAACCACTTTCACAGGAAGAAATATGTGAGATGGTGTTGGGAAGACGACTAGGACATGTTAAAGGTCTCGATTGGGGGCCAAAACCAAAGCCAAGAAAGTATGCTTCCTCATCATCGATTGAGTCTATGCAACATAGAGAGTTCGAACAAGTGATTGAGATACAAAATTTGAAAGACAACTTGAAGAACAGAAGGCAGAGATTCAACAAGAGAGGGAAGCAAGAAATGCAACTAGGATAG

mRNA sequence

ATGGGGTTCGACGACATTTGCTCACATATGGAAGAGGCATGTGCAAACCCACCCAAGCGACTTAAATCTACCATTGAAGATTGGCATTTTTTGTGCAACAAGTTTGAGAGCCCTGAATTTAAAAGTGTGAAAGATGGCCAACAGTGTGGACCAATTGACCTATTTAAGATAACACACTCACGAGATGACCAATGGATGAACCAGGCTGCCAGTGATGCACATGCATTGATGTTGGAATTGGAAGGGGCGTCAACTTCAGAAGGGAGTCAACCACTTTCACAGGAAGAAATATGTGAGATGGTGTTGGGAAGACGACTAGGACATGTTAAAGGTCTCGATTGGGGGCCAAAACCAAAGCCAAGAAAGTATGCTTCCTCATCATCGATTGAGTCTATGCAACATAGAGAGTTCGAACAAGTGATTGAGATACAAAATTTGAAAGACAACTTGAAGAACAGAAGGCAGAGATTCAACAAGAGAGGGAAGCAAGAAATGCAACTAGGATAG

Coding sequence (CDS)

ATGGGGTTCGACGACATTTGCTCACATATGGAAGAGGCATGTGCAAACCCACCCAAGCGACTTAAATCTACCATTGAAGATTGGCATTTTTTGTGCAACAAGTTTGAGAGCCCTGAATTTAAAAGTGTGAAAGATGGCCAACAGTGTGGACCAATTGACCTATTTAAGATAACACACTCACGAGATGACCAATGGATGAACCAGGCTGCCAGTGATGCACATGCATTGATGTTGGAATTGGAAGGGGCGTCAACTTCAGAAGGGAGTCAACCACTTTCACAGGAAGAAATATGTGAGATGGTGTTGGGAAGACGACTAGGACATGTTAAAGGTCTCGATTGGGGGCCAAAACCAAAGCCAAGAAAGTATGCTTCCTCATCATCGATTGAGTCTATGCAACATAGAGAGTTCGAACAAGTGATTGAGATACAAAATTTGAAAGACAACTTGAAGAACAGAAGGCAGAGATTCAACAAGAGAGGGAAGCAAGAAATGCAACTAGGATAG

Protein sequence

MGFDDICSHMEEACANPPKRLKSTIEDWHFLCNKFESPEFKSVKDGQQCGPIDLFKITHSRDDQWMNQAASDAHALMLELEGASTSEGSQPLSQEEICEMVLGRRLGHVKGLDWGPKPKPRKYASSSSIESMQHREFEQVIEIQNLKDNLKNRRQRFNKRGKQEMQLG

Homology

[Close]

BLAST of Cla003524 vs. TrEMBL
Match: B8A7V1_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_01836 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = 1


Query: 11  EEACANPPKRLKSTIEDWHFLCNKFESPEFKSVKDGQQCGPIDLFKITHSRDDQWMNQAA 70
           E A  NP K L+  + DW +LC+ FE+ EF      Q CG I L+K  +S D  W +  A
Sbjct: 393 ENARMNPHKALEDHLADWFWLCDHFETEEF------QGCGDITLYKECYSNDKGWASSDA 452

Query: 71  SDAHALMLELEGASTSEGSQPLSQEEICEMVLGRRLGHVKGLDWGPKPKPRKYASSSSIE 130
            + H  M+ ++  S  +   PL + +ICE VLG+  G+++G   GPKP  R  A+S+S  
Sbjct: 453 REKHDQMVRMQEESMQQDEIPLIELQICEKVLGKTYGYIRGRGHGPKPNRR--ATSTSTR 512

Query: 131 SMQHREFEQVIEIQNLKDNLKNRRQRFNKRGKQEMQL 168
           + Q  E E     Q +         + N+   Q+ QL
Sbjct: 513 TYQQVEEELASTKQTVAVQQNQLAVQQNQLESQQKQL 541

[Close]

BLAST of Cla003524 vs. TrEMBL
Match: Q75M57_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os03g26360 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.4e-13
Identity = 54/182 (29.67%), Postives = 83/182 (45.60%), Query Frame = 1


Query: 11  EEACANPPKRLKSTIEDWHFLCNKFESPEFKSV----KDGQQ------------------ 70
           E A  NP K L+  + DW +LC+ FE+ EF+      KD +                   
Sbjct: 56  ENARMNPHKALEDRLADWFWLCDHFETEEFQKRSTIGKDNRSNLPYMHWKGTKSFVALQH 115

Query: 71  ---CGPIDLFKITHSRDDQWMNQAASDAHALMLELEGASTSEGSQPLSQEEICEMVLGRR 130
              CG I L+K  +S D  W +  A + H  M+ ++  S  +   PL++ +ICE VLG+ 
Sbjct: 116 ELGCGDITLYKECYSNDKGWASSDAREKHDQMVRMQEESMQQDEIPLTEPQICEKVLGKA 175

Query: 131 LGHVKGLDWGPKPKPRKYASSSSIESMQHREFEQVIEIQNLKDNLKNRRQRFNKRGKQEM 168
            G+++G   GPKP  R  A+S+S  + Q  E E     Q +         + N+   Q+ 
Sbjct: 176 YGYIRGRGHGPKPNRR--ATSTSTRTYQQMEEELASTKQTVAVQQNQLAVQQNQLESQQK 235

[Close]

BLAST of Cla003524 vs. TrEMBL
Match: B9F8Q4_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_11060 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.4e-13
Identity = 54/182 (29.67%), Postives = 83/182 (45.60%), Query Frame = 1


Query: 11  EEACANPPKRLKSTIEDWHFLCNKFESPEFKSV----KDGQQ------------------ 70
           E A  NP K L+  + DW +LC+ FE+ EF+      KD +                   
Sbjct: 152 ENARMNPHKALEDRLADWFWLCDHFETEEFQKRSTIGKDNRSNLPYMHWKGTKSFVALQH 211

Query: 71  ---CGPIDLFKITHSRDDQWMNQAASDAHALMLELEGASTSEGSQPLSQEEICEMVLGRR 130
              CG I L+K  +S D  W +  A + H  M+ ++  S  +   PL++ +ICE VLG+ 
Sbjct: 212 ELGCGDITLYKECYSNDKGWASSDAREKHDQMVRMQEESMQQDEIPLTEPQICEKVLGKA 271

Query: 131 LGHVKGLDWGPKPKPRKYASSSSIESMQHREFEQVIEIQNLKDNLKNRRQRFNKRGKQEM 168
            G+++G   GPKP  R  A+S+S  + Q  E E     Q +         + N+   Q+ 
Sbjct: 272 YGYIRGRGHGPKPNRR--ATSTSTRTYQQMEEELASTKQTVAVQQNQLAVQQNQLESQQK 331

[Close]

BLAST of Cla003524 vs. TrEMBL
Match: C7IZS6_ORYSJ (Os03g0380600 protein OS=Oryza sativa subsp. japonica GN=Os03g0380600 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.4e-13
Identity = 54/182 (29.67%), Postives = 83/182 (45.60%), Query Frame = 1


Query: 11  EEACANPPKRLKSTIEDWHFLCNKFESPEFKSV----KDGQQ------------------ 70
           E A  NP K L+  + DW +LC+ FE+ EF+      KD +                   
Sbjct: 681 ENARMNPHKALEDRLADWFWLCDHFETEEFQKRSTIGKDNRSNLPYMHWKGTKSFVALQH 740

Query: 71  ---CGPIDLFKITHSRDDQWMNQAASDAHALMLELEGASTSEGSQPLSQEEICEMVLGRR 130
              CG I L+K  +S D  W +  A + H  M+ ++  S  +   PL++ +ICE VLG+ 
Sbjct: 741 ELGCGDITLYKECYSNDKGWASSDAREKHDQMVRMQEESMQQDEIPLTEPQICEKVLGKA 800

Query: 131 LGHVKGLDWGPKPKPRKYASSSSIESMQHREFEQVIEIQNLKDNLKNRRQRFNKRGKQEM 168
            G+++G   GPKP  R  A+S+S  + Q  E E     Q +         + N+   Q+ 
Sbjct: 801 YGYIRGRGHGPKPNRR--ATSTSTRTYQQMEEELASTKQTVAVQQNQLAVQQNQLESQQK 860

[Close]

BLAST of Cla003524 vs. TrEMBL
Match: W5HS17_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 50/151 (33.11%), Postives = 78/151 (51.66%), Query Frame = 1


Query: 11  EEACANP-PKRLKSTIEDWHFLCNKFESPEFK-------------------------SVK 70
           ++A +NP P  + + + DW  LC+ FE+ EFK                         +V+
Sbjct: 56  DDARSNPYPPLIDNRVGDWICLCDHFETEEFKKRSTIGKANRSNLPYVHKKGTKSFVAVQ 115

Query: 71  DGQQCGPIDLFKITHSRDDQ-WMNQAASDAHALMLELEGASTSEGSQPLSQEEICEMVLG 130
               CG I L+K  +S D + W ++ A + H  ML+ +     EG  PL++++ICE VLG
Sbjct: 116 HELNCGDIRLYKECYSSDKKGWASEDARNKHEEMLQKQKEPIEEGEVPLTEQQICEHVLG 175

Query: 131 RRLGHVKGLDWGPKPKPRKYASSSSIESMQH 135
           +  G+++G   GPKP  R Y+S+SS  S QH
Sbjct: 176 KAYGYIRGRGHGPKPNRRAYSSASS--STQH 204

[Close]

BLAST of Cla003524 vs. NCBI nr
Match: gi|731411132|ref|XP_010657852.1| (PREDICTED: uncharacterized protein LOC104881002 [Vitis vinifera])

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-19
Identity = 59/140 (42.14%), Postives = 88/140 (62.86%), Query Frame = 1


Query: 12  EACANPPKRLKSTIEDWHFLCNKFESPEFKSVKDGQQCGPIDLFKITHSRD-DQWMNQAA 71
           EA  NP + + S  EDW +LC++F S EFKS ++G+  G I+LFK+ H +  D W+NQ A
Sbjct: 57  EAKRNPHESV-SNQEDWDYLCDRFSSEEFKSTENGEMVGQIELFKLVHWKSQDGWINQEA 116

Query: 72  SDAHALMLELEGASTSEGSQPLSQEEICEMVLGRRLGHVKGLDWGPKP----KPRKYASS 131
            D +  MLEL+    ++G   +++ EICE V G++ G+VKGL +GPKP    K R  +S 
Sbjct: 117 RDYYEKMLELQRQPIAKGVVAMTEAEICERVFGQKSGYVKGLGFGPKPISFSKSRPSSSK 176

Query: 132 SSIESMQHR--EFEQVIEIQ 145
             IE ++HR  E + ++E Q
Sbjct: 177 REIE-LEHRLVETQLLVETQ 194

[Close]

BLAST of Cla003524 vs. NCBI nr
Match: gi|731417062|ref|XP_010660148.1| (PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera])

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18
Identity = 58/153 (37.91%), Postives = 93/153 (60.78%), Query Frame = 1


Query: 12  EACANPPKRLKSTIEDWHFLCNKFESPEFKSVKDGQQCGPIDLFKITHSRD-DQWMNQAA 71
           EA  NP + + S  EDW +LC++F S EFKS ++G+  G I+LFK+ H +  D W+NQ  
Sbjct: 127 EAKRNPHESV-SNQEDWDYLCDRFSSEEFKSTENGEMVGQIELFKLVHWKSQDGWINQEK 186

Query: 72  SDAHALMLELEGASTSEGSQPLSQEEICEMVLGRRLGHVKGLDWGPKP----KPRKYASS 131
                 MLEL+    +EG+  +++ +ICE VLG++ G+VKGL +GPKP    K R  +S 
Sbjct: 187 ------MLELQRQPIAEGAVAMTEAKICERVLGQKSGYVKGLGFGPKPISFSKSRPSSSE 246

Query: 132 SSIESMQHREFEQVIEIQNLKDNLKNRRQRFNK 160
             IE ++HR  E  + ++  +  L+ ++ R ++
Sbjct: 247 REIE-LEHRLVETQLLVETQQQQLETQQDRIDQ 271

[Close]

BLAST of Cla003524 vs. NCBI nr
Match: gi|218188175|gb|EEC70602.1| (hypothetical protein OsI_01836 [Oryza sativa Indica Group])

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = 1


Query: 11  EEACANPPKRLKSTIEDWHFLCNKFESPEFKSVKDGQQCGPIDLFKITHSRDDQWMNQAA 70
           E A  NP K L+  + DW +LC+ FE+ EF      Q CG I L+K  +S D  W +  A
Sbjct: 393 ENARMNPHKALEDHLADWFWLCDHFETEEF------QGCGDITLYKECYSNDKGWASSDA 452

Query: 71  SDAHALMLELEGASTSEGSQPLSQEEICEMVLGRRLGHVKGLDWGPKPKPRKYASSSSIE 130
            + H  M+ ++  S  +   PL + +ICE VLG+  G+++G   GPKP  R  A+S+S  
Sbjct: 453 REKHDQMVRMQEESMQQDEIPLIELQICEKVLGKTYGYIRGRGHGPKPNRR--ATSTSTR 512

Query: 131 SMQHREFEQVIEIQNLKDNLKNRRQRFNKRGKQEMQL 168
           + Q  E E     Q +         + N+   Q+ QL
Sbjct: 513 TYQQVEEELASTKQTVAVQQNQLAVQQNQLESQQKQL 541

[Close]

BLAST of Cla003524 vs. NCBI nr
Match: gi|255674545|dbj|BAH92175.1| (Os03g0380600 [Oryza sativa Japonica Group])

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 54/182 (29.67%), Postives = 83/182 (45.60%), Query Frame = 1


Query: 11  EEACANPPKRLKSTIEDWHFLCNKFESPEFKSV----KDGQQ------------------ 70
           E A  NP K L+  + DW +LC+ FE+ EF+      KD +                   
Sbjct: 681 ENARMNPHKALEDRLADWFWLCDHFETEEFQKRSTIGKDNRSNLPYMHWKGTKSFVALQH 740

Query: 71  ---CGPIDLFKITHSRDDQWMNQAASDAHALMLELEGASTSEGSQPLSQEEICEMVLGRR 130
              CG I L+K  +S D  W +  A + H  M+ ++  S  +   PL++ +ICE VLG+ 
Sbjct: 741 ELGCGDITLYKECYSNDKGWASSDAREKHDQMVRMQEESMQQDEIPLTEPQICEKVLGKA 800

Query: 131 LGHVKGLDWGPKPKPRKYASSSSIESMQHREFEQVIEIQNLKDNLKNRRQRFNKRGKQEM 168
            G+++G   GPKP  R  A+S+S  + Q  E E     Q +         + N+   Q+ 
Sbjct: 801 YGYIRGRGHGPKPNRR--ATSTSTRTYQQMEEELASTKQTVAVQQNQLAVQQNQLESQQK 860

[Close]

BLAST of Cla003524 vs. NCBI nr
Match: gi|1002255711|ref|XP_015632135.1| (PREDICTED: uncharacterized protein LOC9268328 [Oryza sativa Japonica Group])

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 54/182 (29.67%), Postives = 83/182 (45.60%), Query Frame = 1


Query: 11  EEACANPPKRLKSTIEDWHFLCNKFESPEFKSV----KDGQQ------------------ 70
           E A  NP K L+  + DW +LC+ FE+ EF+      KD +                   
Sbjct: 152 ENARMNPHKALEDRLADWFWLCDHFETEEFQKRSTIGKDNRSNLPYMHWKGTKSFVALQH 211

Query: 71  ---CGPIDLFKITHSRDDQWMNQAASDAHALMLELEGASTSEGSQPLSQEEICEMVLGRR 130
              CG I L+K  +S D  W +  A + H  M+ ++  S  +   PL++ +ICE VLG+ 
Sbjct: 212 ELGCGDITLYKECYSNDKGWASSDAREKHDQMVRMQEESMQQDEIPLTEPQICEKVLGKA 271

Query: 131 LGHVKGLDWGPKPKPRKYASSSSIESMQHREFEQVIEIQNLKDNLKNRRQRFNKRGKQEM 168
            G+++G   GPKP  R  A+S+S  + Q  E E     Q +         + N+   Q+ 
Sbjct: 272 YGYIRGRGHGPKPNRR--ATSTSTRTYQQMEEELASTKQTVAVQQNQLAVQQNQLESQQK 331

The following BLAST results are available for this feature:

BLAST of Cla003524 vs. TrEMBL


Match Name	E-value	Identity	Description
B8A7V1_ORYSI	1.4e-14	33.76	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_01836 PE=4...	[more]
Q75M57_ORYSJ	7.4e-13	29.67	Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os03g26360 PE=4 SV=1	[more]
B9F8Q4_ORYSJ	7.4e-13	29.67	Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_11060 PE=4 SV=1	[more]
C7IZS6_ORYSJ	7.4e-13	29.67	Os03g0380600 protein OS=Oryza sativa subsp. japonica GN=Os03g0380600 PE=4 SV=1	[more]
W5HS17_WHEAT	1.3e-12	33.11	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]

BLAST of Cla003524 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|731411132\|ref\|XP_010657852.1\|	2.6e-19	42.14	PREDICTED: uncharacterized protein LOC104881002 [Vitis vinifera]	[more]
gi\|731417062\|ref\|XP_010660148.1\|	1.0e-18	37.91	PREDICTED: uncharacterized protein LOC104881475 [Vitis vinifera]	[more]
gi\|218188175\|gb\|EEC70602.1\|	1.9e-14	33.76	hypothetical protein OsI_01836 [Oryza sativa Indica Group]	[more]
gi\|255674545\|dbj\|BAH92175.1\|	1.1e-12	29.67	Os03g0380600 [Oryza sativa Japonica Group]	[more]
gi\|1002255711\|ref\|XP_015632135.1\|	1.1e-12	29.67	PREDICTED: uncharacterized protein LOC9268328 [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003524	Cla003524.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 140..160 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003524	Melon (DHL92) v3.6.1	medwmB155
Cla003524	Cucumber (Chinese Long) v3	cucwmB049
Cla003524	Watermelon (97103) v2	wmwmbB243
Cla003524	Watermelon (97103) v2	wmwmbB250
Cla003524	Wax gourd	wgowmB506
Cla003524	Wax gourd	wgowmB510
Cla003524	Cucumber (Gy14) v1	cgywmB392
Cla003524	Cucurbita maxima (Rimu)	cmawmB168
Cla003524	Cucurbita maxima (Rimu)	cmawmB199
Cla003524	Cucurbita moschata (Rifu)	cmowmB154
Cla003524	Cucurbita moschata (Rifu)	cmowmB186
Cla003524	Melon (DHL92) v3.5.1	mewmB159
Cla003524	Watermelon (Charleston Gray)	wcgwmB158
Cla003524	Cucumber (Chinese Long) v2	cuwmB042
Cla003524	Cucurbita pepo (Zucchini)	cpewmB518
Cla003524	Bottle gourd (USVL1VR-Ls)	lsiwmB260
Cla003524	Cucumber (Gy14) v2	cgybwmB043