Cla003516 (gene) Watermelon (97103) v1

NameCla003516
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 13310024 .. 13310296 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGCAAGAACCCGAATGGCAGCATACATTCAGCCCAATTAGCAATATTACAAACGAAATCAAACCAGGACCTAAAAAGTTCGGTGTCAAACCAGAAGTTGCCGCTAAATTAGATACAAGACCACCTCCATCCGACATATTAGAAAAAGCCAAAGCTGCCATTGCTTCAGCTGAGCGCGCCACTGCAGCAGCCCGAGTAGCTGCTGAACTAGCAAATGTCAACCTTGGAGCAATGAAGTTAGAAGGCGGACAAACTTCGGAGTGTTGA

mRNA sequence

ATGGGAAAGCAAGAACCCGAATGGCAGCATACATTCAGCCCAATTAGCAATATTACAAACGAAATCAAACCAGGACCTAAAAAGTTCGGTGTCAAACCAGAAGTTGCCGCTAAATTAGATACAAGACCACCTCCATCCGACATATTAGAAAAAGCCAAAGCTGCCATTGCTTCAGCTGAGCGCGCCACTGCAGCAGCCCGAGTAGCTGCTGAACTAGCAAATGTCAACCTTGGAGCAATGAAGTTAGAAGGCGGACAAACTTCGGAGTGTTGA

Coding sequence (CDS)

ATGGGAAAGCAAGAACCCGAATGGCAGCATACATTCAGCCCAATTAGCAATATTACAAACGAAATCAAACCAGGACCTAAAAAGTTCGGTGTCAAACCAGAAGTTGCCGCTAAATTAGATACAAGACCACCTCCATCCGACATATTAGAAAAAGCCAAAGCTGCCATTGCTTCAGCTGAGCGCGCCACTGCAGCAGCCCGAGTAGCTGCTGAACTAGCAAATGTCAACCTTGGAGCAATGAAGTTAGAAGGCGGACAAACTTCGGAGTGTTGA

Protein sequence

MGKQEPEWQHTFSPISNITNEIKPGPKKFGVKPEVAAKLDTRPPPSDILEKAKAAIASAERATAAARVAAELANVNLGAMKLEGGQTSEC
BLAST of Cla003516 vs. TrEMBL
Match: A0A0A0KMU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G367190 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.5e-31
Identity = 75/90 (83.33%), Postives = 77/90 (85.56%), Query Frame = 1

Query: 1   MGKQEPEWQHTFSPISNITNEIKPGPKKFGVKPEVAAKLDTRPPPSDILEKAKAAIASAE 60
           MGK+EPE  H   PIS  TNEIKP PK F VKPEVAAKLDTR PPSD+LEKAKAAIASAE
Sbjct: 235 MGKKEPEHHHAVGPISYNTNEIKPEPKSFDVKPEVAAKLDTR-PPSDVLEKAKAAIASAE 294

Query: 61  RATAAARVAAELANVNLGAMKLEGGQTSEC 91
           RATAAARVAAELANVNLG MK EGGQTSEC
Sbjct: 295 RATAAARVAAELANVNLGTMKFEGGQTSEC 323

BLAST of Cla003516 vs. TrEMBL
Match: A0A0B0MHH1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21801 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.0e-10
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1

Query: 6   PEWQHTFSP--ISNIT-NEIKPGPKKFGVKPEVAAKLDTRPPPSDILEKAKAAIASAERA 65
           P  QH   P  +  +T +EI+P  K     P    K +T   PSD+LE+A+AAIASAERA
Sbjct: 240 PASQHHQVPSHVGKLTRSEIEPSVKNGTAGPISDIKTETNSRPSDVLERARAAIASAERA 299

Query: 66  TAAARVAAELANVNLGAMKLEGGQT 88
           TAAAR AAEL NV  G++KL+G  +
Sbjct: 300 TAAARAAAELVNVKFGSLKLQGASS 324

BLAST of Cla003516 vs. TrEMBL
Match: A0A067KC50_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18335 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-09
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 1

Query: 3   KQEPEWQHTFSPISNI----TNEIKPGPKKFGVKPEVAAKLDTRPPPSDILEKAKAAIAS 62
           +Q  ++    SP+ N     T+E K   K     P   AK  T    SD+LE A+AAIAS
Sbjct: 239 RQGSQYLQAPSPMINTPSVDTSETKSSIKNDTTIPSPDAKRGTTSGSSDVLEIARAAIAS 298

Query: 63  AERATAAARVAAELANVNLGAMKLEGGQTS 89
           AERATA AR AAEL NVN G++KLE G++S
Sbjct: 299 AERATAVARAAAELVNVNFGSLKLEEGKSS 328

BLAST of Cla003516 vs. TrEMBL
Match: A0A061ED43_THECC (Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao GN=TCM_009773 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-09
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 1

Query: 3   KQEPEWQHTFSPISNI----TNEIKPGPKKFGVKPEVAAKLDTRPPPSDILEKAKAAIAS 62
           KQ  + Q    P+S      ++EI+P  K          K +T   PSD+LE+A+AAIAS
Sbjct: 239 KQASQHQQAPGPVSKAALLTSSEIEPSAKNCTAGSVSDIKTETTSRPSDVLERARAAIAS 298

Query: 63  AERATAAARVAAELANVNLGAMKLEG 85
           AE A AAAR AAEL NV  G+MKLEG
Sbjct: 299 AECAIAAARAAAELVNVKFGSMKLEG 324

BLAST of Cla003516 vs. TrEMBL
Match: A0A059BF26_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02315 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-08
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 1

Query: 16  SNITNEIKPGPKKFGVKPEVAAKLDTRPPPSDILEKAKAAIASAERATAAARVAAELANV 75
           S+ITNEI+   K          K++TRP  S+ILE+A+AAIASAERATAAAR AAELA +
Sbjct: 256 SHITNEIETSQKSQDAGMLTDLKIETRPQSSEILERARAAIASAERATAAARAAAELAKI 315

Query: 76  NLGAMK 82
             G  K
Sbjct: 316 QYGMQK 321

BLAST of Cla003516 vs. NCBI nr
Match: gi|659131631|ref|XP_008465781.1| (PREDICTED: IST1 homolog [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 5.0e-33
Identity = 75/90 (83.33%), Postives = 78/90 (86.67%), Query Frame = 1

Query: 1   MGKQEPEWQHTFSPISNITNEIKPGPKKFGVKPEVAAKLDTRPPPSDILEKAKAAIASAE 60
           MGK+EPE  H   PI+  TNEIKP PK F VKPEVAAKLDTRPPPSD+LEKAKAAIASAE
Sbjct: 236 MGKKEPEHHHAVGPINYNTNEIKPEPKSFDVKPEVAAKLDTRPPPSDVLEKAKAAIASAE 295

Query: 61  RATAAARVAAELANVNLGAMKLEGGQTSEC 91
           RATAAARVAAELANVNLG MK EGGQTSEC
Sbjct: 296 RATAAARVAAELANVNLGTMKFEGGQTSEC 325

BLAST of Cla003516 vs. NCBI nr
Match: gi|449445148|ref|XP_004140335.1| (PREDICTED: IST1 homolog [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.6e-31
Identity = 75/90 (83.33%), Postives = 77/90 (85.56%), Query Frame = 1

Query: 1   MGKQEPEWQHTFSPISNITNEIKPGPKKFGVKPEVAAKLDTRPPPSDILEKAKAAIASAE 60
           MGK+EPE  H   PIS  TNEIKP PK F VKPEVAAKLDTR PPSD+LEKAKAAIASAE
Sbjct: 235 MGKKEPEHHHAVGPISYNTNEIKPEPKSFDVKPEVAAKLDTR-PPSDVLEKAKAAIASAE 294

Query: 61  RATAAARVAAELANVNLGAMKLEGGQTSEC 91
           RATAAARVAAELANVNLG MK EGGQTSEC
Sbjct: 295 RATAAARVAAELANVNLGTMKFEGGQTSEC 323

BLAST of Cla003516 vs. NCBI nr
Match: gi|1009155255|ref|XP_015895613.1| (PREDICTED: IST1 homolog [Ziziphus jujuba])

HSP 1 Score: 71.6 bits (174), Expect = 7.7e-10
Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 1

Query: 2   GKQEPEWQHTFSPISNI----TNEIKPGPKKFGVKPEVAAKLDTRPPPSDILEKAKAAIA 61
           GKQEP+       +S +    TNEI+P  +     P +  K +TRP  SD+LE+A+AAIA
Sbjct: 239 GKQEPQHLQVPKSLSKMPSFGTNEIQPSIRDDDAPPAIDFKHETRPRSSDVLERARAAIA 298

Query: 62  SAERATAAARVAAELANV 76
           SAERA+AAAR AAELANV
Sbjct: 299 SAERASAAARAAAELANV 316

BLAST of Cla003516 vs. NCBI nr
Match: gi|728814754|gb|KHG01623.1| (Uncharacterized protein F383_21801 [Gossypium arboreum])

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1

Query: 6   PEWQHTFSP--ISNIT-NEIKPGPKKFGVKPEVAAKLDTRPPPSDILEKAKAAIASAERA 65
           P  QH   P  +  +T +EI+P  K     P    K +T   PSD+LE+A+AAIASAERA
Sbjct: 240 PASQHHQVPSHVGKLTRSEIEPSVKNGTAGPISDIKTETNSRPSDVLERARAAIASAERA 299

Query: 66  TAAARVAAELANVNLGAMKLEGGQT 88
           TAAAR AAEL NV  G++KL+G  +
Sbjct: 300 TAAARAAAELVNVKFGSLKLQGASS 324

BLAST of Cla003516 vs. NCBI nr
Match: gi|802681321|ref|XP_012082098.1| (PREDICTED: IST1 homolog [Jatropha curcas])

HSP 1 Score: 68.6 bits (166), Expect = 6.6e-09
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 1

Query: 3   KQEPEWQHTFSPISNI----TNEIKPGPKKFGVKPEVAAKLDTRPPPSDILEKAKAAIAS 62
           +Q  ++    SP+ N     T+E K   K     P   AK  T    SD+LE A+AAIAS
Sbjct: 239 RQGSQYLQAPSPMINTPSVDTSETKSSIKNDTTIPSPDAKRGTTSGSSDVLEIARAAIAS 298

Query: 63  AERATAAARVAAELANVNLGAMKLEGGQTS 89
           AERATA AR AAEL NVN G++KLE G++S
Sbjct: 299 AERATAVARAAAELVNVNFGSLKLEEGKSS 328

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KMU2_CUCSA2.5e-3183.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G367190 PE=4 SV=1[more]
A0A0B0MHH1_GOSAR7.0e-1049.41Uncharacterized protein OS=Gossypium arboreum GN=F383_21801 PE=4 SV=1[more]
A0A067KC50_JATCU4.6e-0947.78Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18335 PE=4 SV=1[more]
A0A061ED43_THECC6.0e-0947.67Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao GN=TCM_... [more]
A0A059BF26_EUCGR1.0e-0856.06Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02315 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659131631|ref|XP_008465781.1|5.0e-3383.33PREDICTED: IST1 homolog [Cucumis melo][more]
gi|449445148|ref|XP_004140335.1|3.6e-3183.33PREDICTED: IST1 homolog [Cucumis sativus][more]
gi|1009155255|ref|XP_015895613.1|7.7e-1052.56PREDICTED: IST1 homolog [Ziziphus jujuba][more]
gi|728814754|gb|KHG01623.1|1.0e-0949.41Uncharacterized protein F383_21801 [Gossypium arboreum][more]
gi|802681321|ref|XP_012082098.1|6.6e-0947.78PREDICTED: IST1 homolog [Jatropha curcas][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003516Cla003516.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None