Cla003511 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003511
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 13130967 .. 13131269 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATAATCCAGGAGGGGGTGTGACACAAGTAGACGAAGCCGCAGTGGCGTTTGAGGAGGAAATGAGGGAAGAAGAAAGATTAGAAAAGGCAGCTGAGGAGTTTGAGAGAGAGTTGCAATTAGAAGAAGATGAAGAGTTGGCTGCAAGAATTAATGCCCAAGAAGAAAGGGAGGGCAAAAAGAAGAAAAAGAAGAGAAGTAGGCATCACTTGCCTACAAGGAAGAAACGCATCGGGGAGGATGCGAGAGAAAAGCAAGGTGTTAGCACCTTGAAAAAGAAAAAGAAGAAAGAAAAATAG

mRNA sequence

ATGGAGGATAATCCAGGAGGGGGTGTGACACAAGTAGACGAAGCCGCAGTGGCGTTTGAGGAGGAAATGAGGGAAGAAGAAAGATTAGAAAAGGCAGCTGAGGAGTTTGAGAGAGAGTTGCAATTAGAAGAAGATGAAGAGTTGGCTGCAAGAATTAATGCCCAAGAAGAAAGGGAGGGCAAAAAGAAGAAAAAGAAGAGAAGTAGGCATCACTTGCCTACAAGGAAGAAACGCATCGGGGAGGATGCGAGAGAAAAGCAAGGTGTTAGCACCTTGAAAAAGAAAAAGAAGAAAGAAAAATAG

Coding sequence (CDS)

ATGGAGGATAATCCAGGAGGGGGTGTGACACAAGTAGACGAAGCCGCAGTGGCGTTTGAGGAGGAAATGAGGGAAGAAGAAAGATTAGAAAAGGCAGCTGAGGAGTTTGAGAGAGAGTTGCAATTAGAAGAAGATGAAGAGTTGGCTGCAAGAATTAATGCCCAAGAAGAAAGGGAGGGCAAAAAGAAGAAAAAGAAGAGAAGTAGGCATCACTTGCCTACAAGGAAGAAACGCATCGGGGAGGATGCGAGAGAAAAGCAAGGTGTTAGCACCTTGAAAAAGAAAAAGAAGAAAGAAAAATAG

Protein sequence

MEDNPGGGVTQVDEAAVAFEEEMREEERLEKAAEEFERELQLEEDEELAARINAQEEREGKKKKKKRSRHHLPTRKKRIGEDAREKQGVSTLKKKKKKEK

Homology

[Close]

BLAST of Cla003511 vs. Swiss-Prot
Match: IF2_PSEHT (Translation initiation factor IF-2 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=infB PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.5e-06
Identity = 37/97 (38.14%), Postives = 51/97 (52.58%), Query Frame = 1


Query: 14  EAAVAFEEEMREEERLEKAAEEF-------ERELQLEEDEELAARINAQ--EEREGKKKK 73
           E +   E++  E ERL+K AEE        E + Q EE  +LA   +A+  +E E +KK+
Sbjct: 172 EQSAKSEKDRIEAERLQKEAEEAALKKAEEEAKRQAEEARKLAEENSARWKKEEEERKKR 231

Query: 74  KKRSRHHLPT----RKKRIGEDAREKQGVSTLKKKKK 98
           ++ S HHL T    R+     DAR++QG    KKKKK
Sbjct: 232 EETSDHHLTTSTYAREAEDVADARDEQGTRRAKKKKK 268

[Close]

BLAST of Cla003511 vs. NCBI nr
Match: gi|918299099|gb|KOF73818.1| (hypothetical protein OCBIM_22037274mg [Octopus bimaculoides])

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1


Query: 20  EEEMREEERLEKAAEEFERELQLEEDEELAARINAQEEREGKKKKKKRSRHHLPTRKKRI 79
           EEE  EEE  E+  EE E E ++EE+EE   +   +EE EG++KKKK++ ++   +KKR 
Sbjct: 61  EEEEEEEEEEEEEEEEEEEEEEMEEEEEEGEK---EEEEEGEEKKKKKNNNNKKKKKKR- 120

Query: 80  GEDAREKQGVSTLKKKKKKEK 101
            +  ++K+ +   KKKKKK+K
Sbjct: 121 -KKKKKKKKMKEKKKKKKKKK 136

[Close]

BLAST of Cla003511 vs. NCBI nr
Match: gi|918299099|gb|KOF73818.1| (hypothetical protein OCBIM_22037274mg [Octopus bimaculoides])

HSP 1 Score: 44.7 bits (104), Expect = 1.1e-01
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 1


Query: 20  EEEMREEERLEKAAEEFERELQLEEDEELAARINAQEEREGKKKKKKRSRHHLPTRKKR- 79
           EEEM EEE      EE E+E + EE EE   + N   +++ KK+KKK+ +  +  +KK+ 
Sbjct: 80  EEEMEEEE------EEGEKE-EEEEGEEKKKKKNNNNKKKKKKRKKKKKKKKMKEKKKKK 139

Query: 80  -----IGEDAREKQGVSTLKKKKKKEK 101
                   + ++K+     KKKKKK+K
Sbjct: 140 KKKKNNNNNNKKKKWKKKKKKKKKKKK 159

HSP 2 Score: 37.4 bits (85), Expect = 1.8e+01
Identity = 20/83 (24.10%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 20  EEEMREEERLEKAAEEFERELQLEEDEELAARINAQEEREGKKKKKKRSRHHLPTRK--K 79
           +++ +++++ +K  E+ +++ + ++ +E   +    +++  KKK+KK+ +     RK  K
Sbjct: 150 KKKKKKKKKKKKWKEKKKKKWKKKKKKERKMKKKQSKKKNKKKKEKKKKKKWKKKRKRWK 209

Query: 80  RIGEDAREKQGVSTLKKKKKKEK 101
           + G+  ++K+G    +KKKKK K
Sbjct: 210 KKGKKKKKKKGKRKKEKKKKKRK 232

The following BLAST results are available for this feature:

BLAST of Cla003511 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IF2_PSEHT	7.5e-06	38.14	Translation initiation factor IF-2 OS=Pseudoalteromonas haloplanktis (strain TAC...	[more]

BLAST of Cla003511 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|918299099\|gb\|KOF73818.1\|	3.4e-06	41.98	hypothetical protein OCBIM_22037274mg [Octopus bimaculoides]	[more]
gi\|918299099\|gb\|KOF73818.1\|	1.1e-01	35.63	hypothetical protein OCBIM_22037274mg [Octopus bimaculoides]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003511	Cla003511.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 12..53 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003511	Cucumber (Gy14) v1	cgywmB713
Cla003511	Cucurbita maxima (Rimu)	cmawmB674
Cla003511	Melon (DHL92) v3.5.1	mewmB270
Cla003511	Watermelon (Charleston Gray)	wcgwmB225
Cla003511	Watermelon (Charleston Gray)	wcgwmB231
Cla003511	Cucumber (Chinese Long) v2	cuwmB018
Cla003511	Cucurbita pepo (Zucchini)	cpewmB401
Cla003511	Bottle gourd (USVL1VR-Ls)	lsiwmB010
Cla003511	Cucumber (Gy14) v2	cgybwmB021
Cla003511	Melon (DHL92) v3.6.1	medwmB261
Cla003511	Watermelon (97103) v2	wmwmbB131