Cla003509 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003509
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Gag/pol protein (Fragment) (AHRD V1 ***- E2GK51_BRYDI)
Location	Chr3 : 13098515 .. 13099123 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGTGATAACTACACTTCGTGGAAAAATACGATTAACACTGTACTCATCGTGGAGGACCTGGAGTTTGCAATCACTGAGGAGTGTCCTCAAGTTCTTGCTCAGAATGCATCAAAAAATATTTGTGATGCATATGAGAAATGGATGAGGGCAAACGAAAAGGCCAGAGCATATATTATTGTCAGCTTATCTGAAGTTTTGGCAAAGAAGCATGAAACCATGGCCACTGCTTGTGAGATCATGGATTCATTACAAGAGATGTTTGGACAATCGTCCTCAAAGATCAGGCATGATGCTCTGAAATTCATTTATAATGTATGTATGAACGAGGGGTCATCAGTGCGAGAACATGTTCTCAATATGATAGTCCACTTCAATGTGACTGAAATGAATGGGGCAATTATCGATGAGGCCAGTCAACTTATTTTTATTATGGCATCTCTACTAGAGAGTTTCCTTCAGTTCAGGACCAATGCTGTTATGAACAAACTGAACTACTCTCTTACAATCCCCTTTAACGAGCTGCAGTCTTATGAGTCCATGCATAAAAGCAAAAACCAAATGGGGAGGCAAATGTTGCCAGTTTCTCTAAAAGGTTCAACATAG

mRNA sequence

ATGAATGGTGATAACTACACTTCGTGGAAAAATACGATTAACACTGTACTCATCGTGGAGGACCTGGAGTTTGCAATCACTGAGGAGTGTCCTCAAGTTCTTGCTCAGAATGCATCAAAAAATATTTGTGATGCATATGAGAAATGGATGAGGGCAAACGAAAAGGCCAGAGCATATATTATTGTCAGCTTATCTGAAGTTTTGGCAAAGAAGCATGAAACCATGGCCACTGCTTGTGAGATCATGGATTCATTACAAGAGATGTTTGGACAATCGTCCTCAAAGATCAGGCATGATGCTCTGAAATTCATTTATAATGTATGTATGAACGAGGGGTCATCAGTGCGAGAACATGTTCTCAATATGATAGTCCACTTCAATGTGACTGAAATGAATGGGGCAATTATCGATGAGGCCAGTCAACTTATTTTTATTATGGCATCTCTACTAGAGAGTTTCCTTCAGTTCAGGACCAATGCTGTTATGAACAAACTGAACTACTCTCTTACAATCCCCTTTAACGAGCTGCAGTCTTATGAGTCCATGCATAAAAGCAAAAACCAAATGGGGAGGCAAATGTTGCCAGTTTCTCTAAAAGGTTCAACATAG

Coding sequence (CDS)

ATGAATGGTGATAACTACACTTCGTGGAAAAATACGATTAACACTGTACTCATCGTGGAGGACCTGGAGTTTGCAATCACTGAGGAGTGTCCTCAAGTTCTTGCTCAGAATGCATCAAAAAATATTTGTGATGCATATGAGAAATGGATGAGGGCAAACGAAAAGGCCAGAGCATATATTATTGTCAGCTTATCTGAAGTTTTGGCAAAGAAGCATGAAACCATGGCCACTGCTTGTGAGATCATGGATTCATTACAAGAGATGTTTGGACAATCGTCCTCAAAGATCAGGCATGATGCTCTGAAATTCATTTATAATGTATGTATGAACGAGGGGTCATCAGTGCGAGAACATGTTCTCAATATGATAGTCCACTTCAATGTGACTGAAATGAATGGGGCAATTATCGATGAGGCCAGTCAACTTATTTTTATTATGGCATCTCTACTAGAGAGTTTCCTTCAGTTCAGGACCAATGCTGTTATGAACAAACTGAACTACTCTCTTACAATCCCCTTTAACGAGCTGCAGTCTTATGAGTCCATGCATAAAAGCAAAAACCAAATGGGGAGGCAAATGTTGCCAGTTTCTCTAAAAGGTTCAACATAG

Protein sequence

MNGDNYTSWKNTINTVLIVEDLEFAITEECPQVLAQNASKNICDAYEKWMRANEKARAYIIVSLSEVLAKKHETMATACEIMDSLQEMFGQSSSKIRHDALKFIYNVCMNEGSSVREHVLNMIVHFNVTEMNGAIIDEASQLIFIMASLLESFLQFRTNAVMNKLNYSLTIPFNELQSYESMHKSKNQMGRQMLPVSLKGST

Homology

[Close]

BLAST of Cla003509 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.3e-56
Identity = 102/188 (54.26%), Postives = 152/188 (80.85%), Query Frame = 1


Query: 1   MNGDNYTSWKNTINTVLIVEDLEFAITEECPQVLAQNASKNICDAYEKWMRANEKARAYI 60
           +NGDNY++WK+ +NT+L+V+DL F +TEECPQ  A NA++ + +AY++W++AN+KAR YI
Sbjct: 14  LNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYDRWVKANDKARVYI 73

Query: 61  IVSLSEVLAKKHETMATACEIMDSLQEMFGQSSSKIRHDALKFIYNVCMNEGSSVREHVL 120
           + S+++VLAKKH+++ATA  IMDSL+EMFGQ S  +RH+A+K IY   M EG+SVREHVL
Sbjct: 74  LASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVL 133

Query: 121 NMIVHFNVTEMNGAIIDEASQLIFIMASLLESFLQFRTNAVMNKLNYSLTIPFNELQSYE 180
           +M++HFN+ E+NG  IDEA+Q+ FI+ SL +SF+ F+TNA +NK+ ++LT   NELQ ++
Sbjct: 134 DMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQ 193

Query: 181 SMHKSKNQ 189
           ++  SK +
Sbjct: 194 NLTLSKGK 201

[Close]

BLAST of Cla003509 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.4e-43
Identity = 90/191 (47.12%), Postives = 130/191 (68.06%), Query Frame = 1


Query: 1   MNGDNYTSWKNTINTVLIVEDLEFAITEECPQVLAQNASKNICDAYEKWMRANEKARAYI 60
           ++GDNY  WK+ +N +LI ED +F + +ECP   A NA+K   + Y++W++AN KA+ ++
Sbjct: 14  LDGDNYAKWKSNMNILLICEDYKFVLVDECPPEPAANATKTAREPYDRWIKANNKAKCFM 73

Query: 61  IVSLSEVLAKKHETMATACEIMDSLQEMFGQSSSKIRHDALKFIYNVCMNEGSSVREHVL 120
           + S+S+VL KKHE M TA EIM+SL+ MFG  S K R DA++   N  M +GSSV+ HVL
Sbjct: 74  LASMSDVLCKKHEEMETAYEIMESLEAMFGAPSEKARLDAVRAFMNDKMKKGSSVKAHVL 133

Query: 121 NMIVHFNVTEMNGAIIDEASQLIFIMASLLESFLQFRTNAVMNKLNYSLTIPFNELQSYE 180
           NMI H +  E+NGA IDEA+QL  I+ SL   F +F  N VMNK   +LT   N+LQ++E
Sbjct: 134 NMIDHLHDAELNGARIDEATQLGIILESLSPDFHEFVNNFVMNKKKSNLTELMNDLQNFE 193

Query: 181 SMHKSKNQMGR 192
           S +++K +  +
Sbjct: 194 STNQAKGRRSK 204

[Close]

BLAST of Cla003509 vs. TrEMBL
Match: W9RXH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.0e-41
Identity = 89/184 (48.37%), Postives = 125/184 (67.93%), Query Frame = 1


Query: 1   MNGDNYTSWKNTINTVLIVEDLEFAITEECPQVLAQNASKNICDAYEKWMRANEKARAYI 60
           ++GDNY  WK+ +N +L+ ED +F + EECP   A NASK   + Y++W++AN KA+ ++
Sbjct: 14  LDGDNYAKWKSNMNILLVCEDYKFLLAEECPLEPADNASKTAREPYDRWIKANNKAKCFM 73

Query: 61  IVSLSEVLAKKHETMATACEIMDSLQEMFGQSSSKIRHDALKFIYNVCMNEGSSVREHVL 120
           + S+S+VL KKH  M TA EIM+SL+ MFG  S K   DA++   N  M +GSSV+ HVL
Sbjct: 74  LASMSDVLRKKHGEMETAYEIMESLEAMFGAPSEKACLDAVRAFMNDKMKKGSSVKAHVL 133

Query: 121 NMIVHFNVTEMNGAIIDEASQLIFIMASLLESFLQFRTNAVMNKLNYSLTIPFNELQSYE 180
           NMI H + TE+NGA IDEA+Q+  I+ SL   F +F  N VMNK   +LT   N+LQ++E
Sbjct: 134 NMIDHLHDTELNGARIDEATQVGIILESLSPDFHEFVNNLVMNKKKSNLTELMNDLQNFE 193

Query: 181 SMHK 185
           S +K
Sbjct: 194 STNK 197

[Close]

BLAST of Cla003509 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.0e-40
Identity = 79/149 (53.02%), Postives = 118/149 (79.19%), Query Frame = 1


Query: 1   MNGDNYTSWKNTINTVLIVEDLEFAITEECPQVLAQNASKNICDAYEKWMRANEKARAYI 60
           +N DNY++WK+ +NT+L+VEDL F +TEEC Q  A NA++ + +AY++W +AN+KA  YI
Sbjct: 14  LNSDNYSAWKSNLNTILVVEDLRFILTEECHQAPALNANRTVREAYDRWGKANDKACVYI 73

Query: 61  IVSLSEVLAKKHETMATACEIMDSLQEMFGQSSSKIRHDALKFIYNVCMNEGSSVREHVL 120
           + S+++VLAKK++++AT   IMDS +EMFGQ S  +RH+A+K IY   M EG+SVREHVL
Sbjct: 74  LASMTDVLAKKYDSIATTKGIMDSFREMFGQPSWSLRHEAIKRIYTKRMKEGTSVREHVL 133

Query: 121 NMIVHFNVTEMNGAIIDEASQLIFIMASL 150
           +M++HFN+ +++G  IDEA+Q+ FI+ SL
Sbjct: 134 DMMMHFNIAKVHGGPIDEANQVSFILQSL 162

[Close]

BLAST of Cla003509 vs. TrEMBL
Match: W9RVT2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.0e-40
Identity = 87/185 (47.03%), Postives = 123/185 (66.49%), Query Frame = 1


Query: 2   NGDNYTSWKNTINTVLIVEDLEFAITEECPQVLAQNASKNICDAYEKWMRANEKARAYII 61
           +GDNY  WK+ +N +L+ ED +F + EECPQ  A NASK   + Y++W++AN KA+ +++
Sbjct: 15  DGDNYAKWKSNMNILLVCEDYKFVLVEECPQEPAVNASKTAREPYDRWIKANNKAKCFML 74

Query: 62  VSLSEVLAKKHETMATACEIMDSLQEMFGQSSSKIRHDALKFIYNVCMNEGSSVREHVLN 121
            S+S+VL KKHE M TA EIM+SL+ +FG  S K   DA++   N  M +GSSV+ HVLN
Sbjct: 75  ASMSDVLHKKHEEMETAYEIMESLEAIFGAPSEKAHLDAVRAFMNDKMKKGSSVKAHVLN 134

Query: 122 MIVHFNVTEMNGAIIDEASQLIFIMASLLESFLQFRTNAVMNKLNYSLTIPFNELQSYES 181
           MI H +  E+NGA IDEA+Q+  I+ SL     +F  N VMNK   + T   N+LQ+ ES
Sbjct: 135 MIDHLHDAELNGARIDEATQVGIILESLSPDCHEFVNNFVMNKKKSNFTKLMNDLQNLES 194

Query: 182 MHKSK 187
            +K +
Sbjct: 195 ANKRR 199

[Close]

BLAST of Cla003509 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 268.1 bits (684), Expect = 1.3e-68
Identity = 129/198 (65.15%), Postives = 164/198 (82.83%), Query Frame = 1


Query: 2   NGDNYTSWKNTINTVLIVEDLEFAITEECPQVLAQNASKNICDAYEKWMRANEKARAYII 61
           NG+NY SWKNTINTVLI++DL F + E+CPQV A NA++ + +AYE+W +ANEKARAY++
Sbjct: 15  NGNNYASWKNTINTVLIIDDLRFVLVEKCPQVSAANATRTVREAYERWAKANEKARAYLL 74

Query: 62  VSLSEVLAKKHETMATACEIMDSLQEMFGQSSSKIRHDALKFIYNVCMNEGSSVREHVLN 121
            SLSEVLAKK+E+M TA EIMDSLQEMFGQ+S +I+HDALK+IYN  MN+G+ VREHVLN
Sbjct: 75  ASLSEVLAKKNESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNDGALVREHVLN 134

Query: 122 MIVHFNVTEMNGAIIDEASQLIFIMASLLESFLQFRTNAVMNKLNYSLTIPFNELQSYES 181
           M+V+FNV EMNGA+IDEA+Q+ FI+ SLLESFLQFR+N VMNK+ Y+LT   NELQ++ES
Sbjct: 135 MMVYFNVAEMNGAVIDEANQVSFILESLLESFLQFRSNVVMNKIAYTLTTLLNELQTFES 194

Query: 182 MHKSKNQMGRQMLPVSLK 200
           + K K Q G   +  S +
Sbjct: 195 LMKIKGQKGEANVATSTR 212

[Close]

BLAST of Cla003509 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 226.9 bits (577), Expect = 3.2e-56
Identity = 102/188 (54.26%), Postives = 152/188 (80.85%), Query Frame = 1


Query: 1   MNGDNYTSWKNTINTVLIVEDLEFAITEECPQVLAQNASKNICDAYEKWMRANEKARAYI 60
           +NGDNY++WK+ +NT+L+V+DL F +TEECPQ  A NA++ + +AY++W++AN+KAR YI
Sbjct: 14  LNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYDRWVKANDKARVYI 73

Query: 61  IVSLSEVLAKKHETMATACEIMDSLQEMFGQSSSKIRHDALKFIYNVCMNEGSSVREHVL 120
           + S+++VLAKKH+++ATA  IMDSL+EMFGQ S  +RH+A+K IY   M EG+SVREHVL
Sbjct: 74  LASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVL 133

Query: 121 NMIVHFNVTEMNGAIIDEASQLIFIMASLLESFLQFRTNAVMNKLNYSLTIPFNELQSYE 180
           +M++HFN+ E+NG  IDEA+Q+ FI+ SL +SF+ F+TNA +NK+ ++LT   NELQ ++
Sbjct: 134 DMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQ 193

Query: 181 SMHKSKNQ 189
           ++  SK +
Sbjct: 194 NLTLSKGK 201

[Close]

BLAST of Cla003509 vs. NCBI nr
Match: gi|659072276|ref|XP_008464721.1| (PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo])

HSP 1 Score: 216.5 bits (550), Expect = 4.4e-53
Identity = 102/140 (72.86%), Postives = 123/140 (87.86%), Query Frame = 1


Query: 1   MNGDNYTSWKNTINTVLIVEDLEFAITEECPQVLAQNASKNICDAYEKWMRANEKARAYI 60
           +NG+NY SWKNTINTVLI++DL F + EECPQV A NA++ + +AYE+W +ANEKARAYI
Sbjct: 13  LNGNNYASWKNTINTVLIIDDLIFVLVEECPQVPAANATRTVREAYERWAKANEKARAYI 72

Query: 61  IVSLSEVLAKKHETMATACEIMDSLQEMFGQSSSKIRHDALKFIYNVCMNEGSSVREHVL 120
           + SLS+VLAKKHE+M T  EIMDSLQEMFGQ+S +I+HDALK+IYN  MNEG+SVREHVL
Sbjct: 73  LASLSKVLAKKHESMLTTREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVL 132

Query: 121 NMIVHFNVTEMNGAIIDEAS 141
           NM+VHFNV EMNGA+IDEAS
Sbjct: 133 NMMVHFNVAEMNGAVIDEAS 152

[Close]

BLAST of Cla003509 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.8e-46
Identity = 87/156 (55.77%), Postives = 126/156 (80.77%), Query Frame = 1


Query: 1   MNGDNYTSWKNTINTVLIVEDLEFAITEECPQVLAQNASKNICDAYEKWMRANEKARAYI 60
           +N DNY +WK+ +NT+L+V+DL F +TEECPQ  A NA++   +AY++W++ANEKAR YI
Sbjct: 14  INDDNYAAWKSNLNTILVVDDLRFVLTEECPQNPASNANRTGREAYDRWIKANEKARVYI 73

Query: 61  IVSLSEVLAKKHETMATACEIMDSLQEMFGQSSSKIRHDALKFIYNVCMNEGSSVREHVL 120
           + S+S+VLAKKHE++ATA EIMDSL+ MFGQ    +RH+A+K+IY   M EG+SVREHVL
Sbjct: 74  LASMSDVLAKKHESLATAKEIMDSLRGMFGQPEWSLRHEAVKYIYTKRMKEGTSVREHVL 133

Query: 121 NMIVHFNVTEMNGAIIDEASQLIFIMASLLESFLQF 157
           +M++HFN+ ++NG +I+E +Q+ FI+ SL +SF+ F
Sbjct: 134 DMMMHFNIAQVNGGLIEEVNQVSFILESLPKSFIPF 169

[Close]

BLAST of Cla003509 vs. NCBI nr
Match: gi|659118732|ref|XP_008459275.1| (PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 6.8e-46
Identity = 86/180 (47.78%), Postives = 130/180 (72.22%), Query Frame = 1


Query: 5   NYTSWKNTINTVLIVEDLEFAITEECPQVLAQNASKNICDAYEKWMRANEKARAYIIVSL 64
           +Y +WK+ +N +L++ DL F + EEC   L Q   K++ DAY++W +AN+KA  YI+ S+
Sbjct: 7   DYATWKSKLNMILVITDLRFILMEECSLFLTQGTFKSVRDAYDRWKKANDKAHVYIMASM 66

Query: 65  SEVLAKKHETMATACEIMDSLQEMFGQSSSKIRHDALKFIYNVCMNEGSSVREHVLNMIV 124
           S++L+ KH+ M T  +I+DSL+EMFGQ S +I+ + +K++YN  M +  SV++HVLNMIV
Sbjct: 67  SDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNARMKDSQSVKKHVLNMIV 126

Query: 125 HFNVTEMNGAIIDEASQLIFIMASLLESFLQFRTNAVMNKLNYSLTIPFNELQSYESMHK 184
           HFNV EMN  + DE SQ+ FI+  L +S LQF  NA MNK+ Y++TI  NELQ+++S+ +
Sbjct: 127 HFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKYNMTIFLNELQTFQSLKR 186

The following BLAST results are available for this feature:

BLAST of Cla003509 vs. TrEMBL


Match Name	E-value	Identity	Description
E2GK51_BRYDI	2.3e-56	54.26	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
W9SH28_9ROSA	6.4e-43	47.12	Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1	[more]
W9RXH5_9ROSA	2.0e-41	48.37	Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1	[more]
E2GK52_BRYDI	1.0e-40	53.02	Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1	[more]
W9RVT2_9ROSA	5.0e-40	47.03	Uncharacterized protein OS=Morus notabilis GN=L484_006473 PE=4 SV=1	[more]

BLAST of Cla003509 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113933\|ref\|XP_008456826.1\|	1.3e-68	65.15	PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo]	[more]
gi\|299474487\|gb\|ADJ18449.1\|	3.2e-56	54.26	gag/pol protein [Bryonia dioica]	[more]
gi\|659072276\|ref\|XP_008464721.1\|	4.4e-53	72.86	PREDICTED: uncharacterized protein LOC103502537 [Cucumis melo]	[more]
gi\|778697615\|ref\|XP_011654359.1\|	1.8e-46	55.77	PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus]	[more]
gi\|659118732\|ref\|XP_008459275.1\|	6.8e-46	47.78	PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003509	Cla003509.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 32..163 score: 3.1
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..188 score: 6.9
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 1..188 score: 6.9
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 49..185 score: 8.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003509	Cucurbita pepo (Zucchini)	cpewmB401
Cla003509	Bottle gourd (USVL1VR-Ls)	lsiwmB010
Cla003509	Cucumber (Gy14) v2	cgybwmB021
Cla003509	Melon (DHL92) v3.6.1	medwmB261
Cla003509	Watermelon (97103) v2	wmwmbB131
Cla003509	Cucumber (Gy14) v1	cgywmB713
Cla003509	Cucurbita maxima (Rimu)	cmawmB674
Cla003509	Melon (DHL92) v3.5.1	mewmB270
Cla003509	Watermelon (Charleston Gray)	wcgwmB225
Cla003509	Watermelon (Charleston Gray)	wcgwmB231
Cla003509	Cucumber (Chinese Long) v2	cuwmB018