Cla003480 (gene) Watermelon (97103) v1

Overview
NameCla003480
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 28051449 .. 28051955 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAATGCCTACAGAAGCCGAAATGAATGATGCCCTCACAACCATCGCCAAACCAGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAAACATTGGCGCCAACTTACTTGATCGCCGAGGCCAACCAGTGGCTTTACTTCATCAAGCGGTCGCTAATCCCCACAACGCATGACGCCTCAATTTCAAAGGATCGTGCCTTGGTCATTTACTGCATCATGCGAGGAATTCGGCTAGACGTGGGACGCATCATTGCCCCACAGATTCGGGGTTTGTTTTTCAAGCCAAGGGGTCAGCTATTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAGTTCATGGAGAATGCGCCAGTCAGAGCAGTAAATGGAGTCCTTTCAGCCCAAAGTCTCAGACAGATATTAAAGGACTCCCAGCATCTACTTGAGGTGGCCAACTCAAAGAAGAGGACGACCAAGTCACAAGAACCCATGAGCAAGACATTGCCAGTGGCGGCTTGA

mRNA sequence

ATGTCAATGCCTACAGAAGCCGAAATGAATGATGCCCTCACAACCATCGCCAAACCAGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAAACATTGGCGCCAACTTACTTGATCGCCGAGGCCAACCAGTGGCTTTACTTCATCAAGCGGTCGCTAATCCCCACAACGCATGACGCCTCAATTTCAAAGGATCGTGCCTTGGTCATTTACTGCATCATGCGAGGAATTCGGCTAGACGTGGGACGCATCATTGCCCCACAGATTCGGGGTTTGTTTTTCAAGCCAAGGGGTCAGCTATTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAGTTCATGGAGAATGCGCCAGTCAGAGCAGTAAATGGAGTCCTTTCAGCCCAAAGTCTCAGACAGATATTAAAGGACTCCCAGCATCTACTTGAGGTGGCCAACTCAAAGAAGAGGACGACCAAGTCACAAGAACCCATGAGCAAGACATTGCCAGTGGCGGCTTGA

Coding sequence (CDS)

ATGTCAATGCCTACAGAAGCCGAAATGAATGATGCCCTCACAACCATCGCCAAACCAGGGTCAGAGTGGAACACTTCCCCAAAGGGCATTCAAACATTGGCGCCAACTTACTTGATCGCCGAGGCCAACCAGTGGCTTTACTTCATCAAGCGGTCGCTAATCCCCACAACGCATGACGCCTCAATTTCAAAGGATCGTGCCTTGGTCATTTACTGCATCATGCGAGGAATTCGGCTAGACGTGGGACGCATCATTGCCCCACAGATTCGGGGTTTGTTTTTCAAGCCAAGGGGTCAGCTATTCTTCCCCTTTCTTGTGACAAGACTGTGCGCCAACGCAGAGTTCATGGAGAATGCGCCAGTCAGAGCAGTAAATGGAGTCCTTTCAGCCCAAAGTCTCAGACAGATATTAAAGGACTCCCAGCATCTACTTGAGGTGGCCAACTCAAAGAAGAGGACGACCAAGTCACAAGAACCCATGAGCAAGACATTGCCAGTGGCGGCTTGA

Protein sequence

MSMPTEAEMNDALTTIAKPGSEWNTSPKGIQTLAPTYLIAEANQWLYFIKRSLIPTTHDASISKDRALVIYCIMRGIRLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRLCANAEFMENAPVRAVNGVLSAQSLRQILKDSQHLLEVANSKKRTTKSQEPMSKTLPVAA
Homology
[Close]
BLAST of Cla003480 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-11
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 1 

Query: 6   EAEMNDALTTIAKPGSEWNTSPKGIQTLAPTYLIAEANQWLYFIKRSLIPTTHDASISKD 65
           E ++ + L TIA  G++W  S KG  T     L   A  W +F+   L+ +TH  +IS++
Sbjct: 154 EEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRN 213

Query: 66  RALVIYCIMRGIRLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRLC 111
           RA+++Y ++ G  ++VGR+I  QIR    K +G L+FP L++ LC
Sbjct: 214 RAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELC 258

[Close]
BLAST of Cla003480 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-10
Identity = 40/135 (29.63%), Postives = 72/135 (53.33%), Query Frame = 1 

Query: 5   TEAEMNDALTTIAKPGSEWNTSPKGIQTLAPTYLIAEANQWLYFIKRSLIPTTHDASISK 64
           T+ ++   L  +A  G+ W  SP+G  T     L   A  W +F+    +P+TH  +++K
Sbjct: 81  TDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAK 140

Query: 65  DRALVIYCIMRGIRLDVGRIIAPQIRGL-FFKPRGQLFFPFLVTRLC--ANAEFMENAPV 124
           DR L++Y I+ GI +++  I   +I+     + RG L+FP L+T+L   AN  + ++  +
Sbjct: 141 DRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKDEAI 200

Query: 125 RAVNGVLSAQSLRQI 137
               G +S  S+ +I
Sbjct: 201 VHNAGAISTLSISRI 215

[Close]
BLAST of Cla003480 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1 

Query: 45  WLYFIKRSLIPTTHDASISKDRALVIYCIMRGIRLDVGRIIAPQIRGLFFKPRGQLFFPF 104
           WL  IK+ ++PT H ++IS +R +++YCIM+ I +++G+II+  I  L   PRG   F +
Sbjct: 29  WLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFSY 88

Query: 105 LVTRLCANAEFM-ENAP-VRAVNGVLSAQSLRQIL 138
           L+ +LC  A  M E  P V   +G+    +L +I+
Sbjct: 89  LIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]
BLAST of Cla003480 vs. TrEMBL
Match: A0A061F2U9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024087 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 20  GSEWNTSPKGIQTLAPTYLIAEANQWLYFIKRSLIPTTHDASISKDRALVIYCIMRGIRL 79
           G++W TS     +   + +  E   WL+F+   L+ +TH + ++KDRA++IY I+    +
Sbjct: 96  GAQWKTSHDEPVSFKRSVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSI 155

Query: 80  DVGRIIAPQIRGLFFKPRGQLFFPFLVTRLCANA 114
           DVG++I+  I       R  + FP L+T LCA A
Sbjct: 156 DVGKVISHAILHTGRTKRDGIGFPSLITALCARA 189

[Close]
BLAST of Cla003480 vs. TrEMBL
Match: A0A0L9TE06_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan583s000300 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 33/123 (26.83%), Postives = 61/123 (49.59%), Query Frame = 1 

Query: 1   MSMPTEAEMNDALTTIAKPGSEWNTSPKGIQT-LAPTYLIAEANQWLYFIKRSLIPTTHD 60
           ++M   AE +D  + +  PG  +  +  G    +   YL   A  W+ F   ++ P +H 
Sbjct: 169 LNMEEGAEFDDVESVLCVPGGNFQRNRNGATVHIRRAYLTPMAKYWMAFYHANIQPCSHV 228

Query: 61  ASISKDRALVIYCIMRGIRLDVGRIIAPQIR--GLFFKPRGQLFFPFLVTRLCANAEFME 120
           + I+  RAL +YC++RG+ +++G++I  +I+        +  L  P L+T LC  A    
Sbjct: 229 SDITVSRALFLYCVLRGMSINIGQVIGNEIQTCASTMNNKAPLGHPSLITHLCELAGVNT 288

[Close]
BLAST of Cla003480 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 1 

Query: 6   EAEMNDALTTIAKPGSEWNTSPKGIQTLAPTYLIAEANQWLYFIKRSLIPTTHDASISKD 65
           E ++ + L TIA  G++W  S KG  T     L   A  W +F+   L+ +TH  +IS++
Sbjct: 154 EEQLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRN 213

Query: 66  RALVIYCIMRGIRLDVGRIIAPQIRGLFFKPRGQLFFPFLVTRLC 111
           RA+++Y ++ G  ++VGR+I  QIR    K +G L+FP L++ LC
Sbjct: 214 RAILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELC 258

[Close]
BLAST of Cla003480 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 72.8 bits (177), Expect = 6.5e-10
Identity = 40/135 (29.63%), Postives = 72/135 (53.33%), Query Frame = 1 

Query: 5   TEAEMNDALTTIAKPGSEWNTSPKGIQTLAPTYLIAEANQWLYFIKRSLIPTTHDASISK 64
           T+ ++   L  +A  G+ W  SP+G  T     L   A  W +F+    +P+TH  +++K
Sbjct: 81  TDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAK 140

Query: 65  DRALVIYCIMRGIRLDVGRIIAPQIRGL-FFKPRGQLFFPFLVTRLC--ANAEFMENAPV 124
           DR L++Y I+ GI +++  I   +I+     + RG L+FP L+T+L   AN  + ++  +
Sbjct: 141 DRVLLLYSILTGISVNIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKDEAI 200

Query: 125 RAVNGVLSAQSLRQI 137
               G +S  S+ +I
Sbjct: 201 VHNAGAISTLSISRI 215

[Close]
BLAST of Cla003480 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1 

Query: 45  WLYFIKRSLIPTTHDASISKDRALVIYCIMRGIRLDVGRIIAPQIRGLFFKPRGQLFFPF 104
           WL  IK+ ++PT H ++IS +R +++YCIM+ I +++G+II+  I  L   PRG   F +
Sbjct: 29  WLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFSY 88

Query: 105 LVTRLCANAEFM-ENAP-VRAVNGVLSAQSLRQIL 138
           L+ +LC  A  M E  P V   +G+    +L +I+
Sbjct: 89  LIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]
BLAST of Cla003480 vs. NCBI nr
Match: gi|590634332|ref|XP_007028347.1| (Uncharacterized protein TCM_024087 [Theobroma cacao])

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-07
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 20  GSEWNTSPKGIQTLAPTYLIAEANQWLYFIKRSLIPTTHDASISKDRALVIYCIMRGIRL 79
           G++W TS     +   + +  E   WL+F+   L+ +TH + ++KDRA++IY I+    +
Sbjct: 96  GAQWKTSHDEPVSFKRSVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSI 155

Query: 80  DVGRIIAPQIRGLFFKPRGQLFFPFLVTRLCANA 114
           DVG++I+  I       R  + FP L+T LCA A
Sbjct: 156 DVGKVISHAILHTGRTKRDGIGFPSLITALCARA 189

[Close]
BLAST of Cla003480 vs. NCBI nr
Match: gi|828335831|ref|XP_012575515.1| (PREDICTED: uncharacterized protein LOC101493401 isoform X1 [Cicer arietinum])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 33/109 (30.28%), Postives = 58/109 (53.21%), Query Frame = 1 

Query: 5   TEAEMNDALTTIAKPGSEWNTSP-KGIQTLAPTYLIAEANQWLYFIKRSLIPTTHDASIS 64
           ++ ++N  + T+   G+ W T   K +  +    L A    W   I   L+P ++  S+ 
Sbjct: 196 SDEKLNSIMKTLTVRGTNWKTEKGKNVWKIPFLALKAIPKVWYRLICTKLLPNSNFQSVD 255

Query: 65  KDRALVIYCIMRGIRLDVGRIIAPQIRGLFF--KPRGQLFFPFLVTRLC 111
           KDR L++YC++ G  ++VG+II  +I    F  K + +L FP L++ LC
Sbjct: 256 KDRLLLLYCVVEGFSINVGKIIYDEIIACAFKKKKKERLLFPSLISDLC 304

The following BLAST results are available for this feature:
BLAST of Cla003480 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RBS1_9ROSA1.4e-1137.14Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1[more]
W9QTD9_9ROSA4.5e-1029.63Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1[more]
A0A0A0LAN0_CUCSA2.5e-0836.84Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1[more]
A0A061F2U9_THECC3.6e-0734.04Uncharacterized protein OS=Theobroma cacao GN=TCM_024087 PE=4 SV=1[more]
A0A0L9TE06_PHAAN1.8e-0626.83Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan583s000300 PE=4 SV=1[more]
BLAST of Cla003480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703082781|ref|XP_010092041.1|2.0e-1137.14hypothetical protein L484_000844 [Morus notabilis][more]
gi|703087370|ref|XP_010093253.1|6.5e-1029.63hypothetical protein L484_022412 [Morus notabilis][more]
gi|700202594|gb|KGN57727.1|3.6e-0836.84hypothetical protein Csa_3G263250 [Cucumis sativus][more]
gi|590634332|ref|XP_007028347.1|5.1e-0734.04Uncharacterized protein TCM_024087 [Theobroma cacao][more]
gi|828335831|ref|XP_012575515.1|2.0e-0630.28PREDICTED: uncharacterized protein LOC101493401 isoform X1 [Cicer arietinum][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003480Cla003480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003480Watermelon (97103) v2wmwmbB046
Cla003480Wax gourdwgowmB249
Cla003480Watermelon (Charleston Gray)wcgwmB011