Cla003474 (gene) Watermelon (97103) v1

Overview
NameCla003474
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGlycine cleavage T protein (Aminomethyl transferase) (AHRD V1 *-*- A0YL32_LYNSP); contains Interpro domain(s) IPR006222 Glycine cleavage T-protein, N-terminal
LocationChr9 : 27768399 .. 27770253 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGTTGTCAGTTTCTTCATAACCAAAGCACAGCTAATTTTGAAAGTTTACATCAAGGTCAAGTAAGTTTTGACTAGGCGCACCATGATATCCTATTCTACTCATGTTTGGTTAAATTTAAATTCTTTTAGAATGGAATTATACTAATGAAGATTGTATTTTATGCAATATTTTGTTAACTACAGGGGTGCAGTACTGTATTTGTTACACCCACTGCTCGGACAATTGATATTGCACAAGCATGGATCATGGTAATGCTACAATCTTGTATTCCTTTATGGTCCATGGTTTTCTGTCTCCTAACTTGTTTTGATTTCATTTTAAAATTTATTTGTTATACATGTTGCTAACAGAAAAATGCCATCACATTAATTGTGTCGCCAGTTACACGTGAAAGCATAATTCGGATGCTCAACAAGTAGGTGTTCTTGTAAGTTTTTTAATTGTCCCCAAAAAGGTTTTGTGTTTTTATTTTTTATTTTTTATTTTTTTTTATAATTCTTGATCCCATTATGTTATTTTGATAGTATCCTTGCATAAGAACCATAACGTGAGAGTAGTAATAATAGAACACTGCACAAGAACCATAAAGTTAAAGGCAAGCCTCCCACTACTTCTGCCGAATACGTTAAACGGAATACTGATTGGATGGAAAAGGGACTACTATTCATCTTGATTTGCAGATTATTCCTTGGATCACCATTGAGAAAAGGATTTATTTATTTATTATTAAATATTTTTATTCTTTTTATTCTTTTGGTTTCAGAAATTGATATGATCCATTTGTTAAACTCAAGATAGGAAAACAACGTAAATGATTTGATTATTCTAAGGAGTGTGCATGGCTTTTCCACTTTTATTAATGGAGACTGGGAGGACACTATCAGATTAAGCTTGGTTTGTTTATGGATATATTGGTGAACGAAAATGTGCTATAGATGCTAAAACTTATCATGCTATATGTGTGTGTGTATTTGATTTATGTATGTATGTTTGTTTTCTAGATATACCCATTTATGATTCACGACTTTATAAATGCATTTTTAACCAGATACATCTTTTTAGCGGACAAGGTAGAGATTCAAGATATTACCAAGCAAACATCCTTGTTAGTGTTGGTGGGACCTAAAAGCAACCAAGTAAAAGAGCACTATGCAGTTCTCATGTACAAGCAAATTTGTTTTTATTTCTTATTCCTGGTTTTCATGACTAATTGTTGTAACCCTCAGATCATGGAGGCTTTGAACCTTGGTAGTATAGCTGGAGAGCCATATGGAACACACCAGCACTTTAGTGTAAGCTTTTGTTATCTACTTGAGTTTTCAGGCATTACTTGCCCTTTATAATGAGAATCAACATTTTTTATTGAATATTTATGAAAAGCATTAAAATATTGGAAGCATAACTTGAAACTCTTCCCTATACTGTAAGGACCGAAAAAATGAAAAATTAATTACAGAAGTTATTTTGTTTTATCACTATTCATTACCAATTTAGATTCAAATTTTCAGTTTGGAAATATATGGATATTATTTGGAATACCACTGAATTTTGGACTTTTATTATGCAGGCCAATGGTATGCCAATTACCGTGGGGGTGGGAAATGTCATTTCTGAAGAAGGCTTTTCACTGTTGATATCACCTGCTGTGGCTGGACCAGTTTGGAAAGCTCTAGTTTCTCTAGGTGCTGTTCCAATGGGCTCAAGGGCTTGGGAAATGCTGAGGATATTTCAAGGTGTGCATCTTTCTACGTTTTATGCTCTTTGGTGTGCTGGTTCGCTATTGTTTCATGCACTTGAAATTTTAATGCCATATGTGATCATATTGATTCTTTACAATGGATGCAGTTAA

mRNA sequence

ATGATCGTTGTCAGTTTCTTCATAACCAAAGCACAGCTAATTTTGAAAGTTTACATCAAGGTCAAATACATCTTTTTAGCGGACAAGGTAGAGATTCAAGATATTACCAAGCAAACATCCTTGTTAGTGTTGGTGGGACCTAAAAGCAACCAAGTAAAAGAGCACTATGCAGTTCTCATGTACAAGCAAATTTGTTTTTATTTCTTATTCCTGGTTTTCATGACTAATTGTTGTAACCCTCAGATCATGGAGGCTTTGAACCTTGGTAGTATAGCTGGAGAGCCATATGGAACACACCAGCACTTTAGTGCCAATGGTATGCCAATTACCGTGGGGGTGGGAAATGTCATTTCTGAAGAAGGCTTTTCACTGTTGATATCACCTGCTGTGGCTGGACCAGTTTGGAAAGCTCTAGTTTCTCTAGGTGCTGTTCCAATGGGCTCAAGGGCTTGGGAAATGCTGAGGATATTTCAAGGTGTGCATCTTTCTACGTTTTATGCTCTTTGGTGTGCTGGTTCGCTATTGTTTCATGCACTTGAAATTTTAATGCCATATGTGATCATATTGATTCTTTACAATGGATGCAGTTAA

Coding sequence (CDS)

ATGATCGTTGTCAGTTTCTTCATAACCAAAGCACAGCTAATTTTGAAAGTTTACATCAAGGTCAAATACATCTTTTTAGCGGACAAGGTAGAGATTCAAGATATTACCAAGCAAACATCCTTGTTAGTGTTGGTGGGACCTAAAAGCAACCAAGTAAAAGAGCACTATGCAGTTCTCATGTACAAGCAAATTTGTTTTTATTTCTTATTCCTGGTTTTCATGACTAATTGTTGTAACCCTCAGATCATGGAGGCTTTGAACCTTGGTAGTATAGCTGGAGAGCCATATGGAACACACCAGCACTTTAGTGCCAATGGTATGCCAATTACCGTGGGGGTGGGAAATGTCATTTCTGAAGAAGGCTTTTCACTGTTGATATCACCTGCTGTGGCTGGACCAGTTTGGAAAGCTCTAGTTTCTCTAGGTGCTGTTCCAATGGGCTCAAGGGCTTGGGAAATGCTGAGGATATTTCAAGGTGTGCATCTTTCTACGTTTTATGCTCTTTGGTGTGCTGGTTCGCTATTGTTTCATGCACTTGAAATTTTAATGCCATATGTGATCATATTGATTCTTTACAATGGATGCAGTTAA

Protein sequence

MIVVSFFITKAQLILKVYIKVKYIFLADKVEIQDITKQTSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQIMEALNLGSIAGEPYGTHQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSLGAVPMGSRAWEMLRIFQGVHLSTFYALWCAGSLLFHALEILMPYVIILILYNGCS
Homology
[Close]
BLAST of Cla003474 vs. Swiss-Prot
Match: Y1099_ARATH (Putative transferase At1g60990, chloroplastic OS=Arabidopsis thaliana GN=At1g60990 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.2e-32
Identity = 74/138 (53.62%), Postives = 87/138 (63.04%), Query Frame = 1 

Query: 22  KYIFLADKVEIQDITKQTSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQ 81
           KYIF ADKVEI+DITKQT L  L GPKSNQ                              
Sbjct: 194 KYIFFADKVEIKDITKQTCLFALAGPKSNQ------------------------------ 253

Query: 82  IMEALNLGSIAGEPYGTHQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL 141
           IM  LNLG + G+PYG HQH+S +GMPITVGVG++IS+EGF++L+SP  A  VWK L++ 
Sbjct: 254 IMSKLNLGDLIGQPYGRHQHYSFDGMPITVGVGSLISDEGFTMLMSPGGAVSVWKTLLAE 301

Query: 142 GAVPMGSRAWEMLRIFQG 160
           GA+PMGS AWE LRI QG
Sbjct: 314 GAIPMGSVAWEKLRITQG 301

[Close]
BLAST of Cla003474 vs. TrEMBL
Match: A0A0A0KJI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417880 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 102/139 (73.38%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 22  KYIFLADKVEIQDITKQTSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQ 81
           KYIF+ADKVEIQDIT QTSLLVLVGPKSN                              Q
Sbjct: 199 KYIFVADKVEIQDITNQTSLLVLVGPKSN------------------------------Q 258

Query: 82  IMEALNLGSIAGEPYGTHQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL 141
           IME LNLGSIAGEPYGTHQHFS NGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL
Sbjct: 259 IMEDLNLGSIAGEPYGTHQHFSVNGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL 307

Query: 142 GAVPMGSRAWEMLRIFQGV 161
           GAVPMGSRAWE LRI QG+
Sbjct: 319 GAVPMGSRAWEKLRISQGM 307

[Close]
BLAST of Cla003474 vs. TrEMBL
Match: M5XC04_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006188mg PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.0e-37
Identity = 86/138 (62.32%), Postives = 93/138 (67.39%), Query Frame = 1 

Query: 22  KYIFLADKVEIQDITKQTSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQ 81
           KYIF  DKVEIQDITKQT   VLVGPKSNQ                              
Sbjct: 185 KYIFFNDKVEIQDITKQTCFFVLVGPKSNQ------------------------------ 244

Query: 82  IMEALNLGSIAGEPYGTHQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL 141
           IME LNLG + G+PYGTHQHFS NGMPITVGVGNVISE+GFSLL+SPA AG VWK ++S 
Sbjct: 245 IMEELNLGDLVGQPYGTHQHFSVNGMPITVGVGNVISEKGFSLLMSPAAAGSVWKTILSQ 292

Query: 142 GAVPMGSRAWEMLRIFQG 160
           GA+PMGS AWE LRIFQG
Sbjct: 305 GAIPMGSNAWEKLRIFQG 292

[Close]
BLAST of Cla003474 vs. TrEMBL
Match: D7SZU7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g02180 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.0e-37
Identity = 84/138 (60.87%), Postives = 95/138 (68.84%), Query Frame = 1 

Query: 22  KYIFLADKVEIQDITKQTSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQ 81
           KYIF ADKVEIQDITK+TS  VLVGPKS+QV                             
Sbjct: 192 KYIFFADKVEIQDITKKTSFFVLVGPKSHQV----------------------------- 251

Query: 82  IMEALNLGSIAGEPYGTHQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL 141
            ME LNLG++ G+PYGTHQHF  NGMPITVGVGN ISE+GFS ++SPA+AG VWKAL+S 
Sbjct: 252 -MEDLNLGALVGKPYGTHQHFMVNGMPITVGVGNAISEDGFSFMMSPAIAGSVWKALLSQ 299

Query: 142 GAVPMGSRAWEMLRIFQG 160
           GA+PMGS AWE LRIFQG
Sbjct: 312 GAIPMGSNAWEKLRIFQG 299

[Close]
BLAST of Cla003474 vs. TrEMBL
Match: A0A067EE69_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014411mg PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.6e-35
Identity = 83/138 (60.14%), Postives = 92/138 (66.67%), Query Frame = 1 

Query: 22  KYIFLADKVEIQDITKQTSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQ 81
           KY+F ADKVEIQDITKQT L V+VGPKSNQV                             
Sbjct: 185 KYVFFADKVEIQDITKQTCLFVVVGPKSNQV----------------------------- 244

Query: 82  IMEALNLGSIAGEPYGTHQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL 141
            M  LNLG + GE YGTH+H+S NGMPITVGVGNVISEEGFSLL+SPA AG VW+ L+S 
Sbjct: 245 -MRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ 292

Query: 142 GAVPMGSRAWEMLRIFQG 160
           GAVPMGS AWE LRI +G
Sbjct: 305 GAVPMGSNAWEKLRIIKG 292

[Close]
BLAST of Cla003474 vs. TrEMBL
Match: A0A067EEH8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014411mg PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.6e-35
Identity = 83/138 (60.14%), Postives = 92/138 (66.67%), Query Frame = 1 

Query: 22  KYIFLADKVEIQDITKQTSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQ 81
           KY+F ADKVEIQDITKQT L V+VGPKSNQV                             
Sbjct: 185 KYVFFADKVEIQDITKQTCLFVVVGPKSNQV----------------------------- 244

Query: 82  IMEALNLGSIAGEPYGTHQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL 141
            M  LNLG + GE YGTH+H+S NGMPITVGVGNVISEEGFSLL+SPA AG VW+ L+S 
Sbjct: 245 -MRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ 292

Query: 142 GAVPMGSRAWEMLRIFQG 160
           GAVPMGS AWE LRI +G
Sbjct: 305 GAVPMGSNAWEKLRIIKG 292

[Close]
BLAST of Cla003474 vs. NCBI nr
Match: gi|659097026|ref|XP_008449403.1| (PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 1.0e-51
Identity = 122/182 (67.03%), Postives = 125/182 (68.68%), Query Frame = 1 

Query: 1   MIVVSFFITKAQLILKVYIKVK----------------------YIFLADKVEIQDITKQ 60
           MIVVSFFITKAQLILKVY+K K                      YIFLADKVEIQDIT Q
Sbjct: 67  MIVVSFFITKAQLILKVYVKDKGAVLYLLHPLLGQLILHKHGSWYIFLADKVEIQDITNQ 126

Query: 61  TSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQIMEALNLGSIAGEPYGT 120
           TSLLVLVGPKSN                              QIME LNLGSIAGEPYGT
Sbjct: 127 TSLLVLVGPKSN------------------------------QIMEDLNLGSIAGEPYGT 186

Query: 121 HQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSLGAVPMGSRAWEMLRIFQ 161
           HQHFS NGMPITVGVG+VISEEGFSLLISPAVAGPVWKALVSLGAVPMGSRAWE LRIFQ
Sbjct: 187 HQHFSVNGMPITVGVGSVISEEGFSLLISPAVAGPVWKALVSLGAVPMGSRAWEKLRIFQ 218

[Close]
BLAST of Cla003474 vs. NCBI nr
Match: gi|659097028|ref|XP_008449404.1| (PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X3 [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 1.0e-51
Identity = 122/182 (67.03%), Postives = 125/182 (68.68%), Query Frame = 1 

Query: 1   MIVVSFFITKAQLILKVYIKVK----------------------YIFLADKVEIQDITKQ 60
           MIVVSFFITKAQLILKVY+K K                      YIFLADKVEIQDIT Q
Sbjct: 29  MIVVSFFITKAQLILKVYVKDKGAVLYLLHPLLGQLILHKHGSWYIFLADKVEIQDITNQ 88

Query: 61  TSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQIMEALNLGSIAGEPYGT 120
           TSLLVLVGPKSN                              QIME LNLGSIAGEPYGT
Sbjct: 89  TSLLVLVGPKSN------------------------------QIMEDLNLGSIAGEPYGT 148

Query: 121 HQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSLGAVPMGSRAWEMLRIFQ 161
           HQHFS NGMPITVGVG+VISEEGFSLLISPAVAGPVWKALVSLGAVPMGSRAWE LRIFQ
Sbjct: 149 HQHFSVNGMPITVGVGSVISEEGFSLLISPAVAGPVWKALVSLGAVPMGSRAWEKLRIFQ 180

[Close]
BLAST of Cla003474 vs. NCBI nr
Match: gi|659097024|ref|XP_008449402.1| (PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 1.0e-51
Identity = 122/182 (67.03%), Postives = 125/182 (68.68%), Query Frame = 1 

Query: 1   MIVVSFFITKAQLILKVYIKVK----------------------YIFLADKVEIQDITKQ 60
           MIVVSFFITKAQLILKVY+K K                      YIFLADKVEIQDIT Q
Sbjct: 123 MIVVSFFITKAQLILKVYVKDKGAVLYLLHPLLGQLILHKHGSWYIFLADKVEIQDITNQ 182

Query: 61  TSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQIMEALNLGSIAGEPYGT 120
           TSLLVLVGPKSN                              QIME LNLGSIAGEPYGT
Sbjct: 183 TSLLVLVGPKSN------------------------------QIMEDLNLGSIAGEPYGT 242

Query: 121 HQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSLGAVPMGSRAWEMLRIFQ 161
           HQHFS NGMPITVGVG+VISEEGFSLLISPAVAGPVWKALVSLGAVPMGSRAWE LRIFQ
Sbjct: 243 HQHFSVNGMPITVGVGSVISEEGFSLLISPAVAGPVWKALVSLGAVPMGSRAWEKLRIFQ 274

[Close]
BLAST of Cla003474 vs. NCBI nr
Match: gi|449444697|ref|XP_004140110.1| (PREDICTED: aminomethyltransferase, mitochondrial [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.6e-44
Identity = 102/139 (73.38%), Postives = 104/139 (74.82%), Query Frame = 1 

Query: 22  KYIFLADKVEIQDITKQTSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQ 81
           KYIF+ADKVEIQDIT QTSLLVLVGPKSN                              Q
Sbjct: 199 KYIFVADKVEIQDITNQTSLLVLVGPKSN------------------------------Q 258

Query: 82  IMEALNLGSIAGEPYGTHQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL 141
           IME LNLGSIAGEPYGTHQHFS NGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL
Sbjct: 259 IMEDLNLGSIAGEPYGTHQHFSVNGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL 307

Query: 142 GAVPMGSRAWEMLRIFQGV 161
           GAVPMGSRAWE LRI QG+
Sbjct: 319 GAVPMGSRAWEKLRISQGM 307

[Close]
BLAST of Cla003474 vs. NCBI nr
Match: gi|645223749|ref|XP_008218780.1| (PREDICTED: dimethylglycine dehydrogenase, mitochondrial [Prunus mume])

HSP 1 Score: 164.9 bits (416), Expect = 1.5e-37
Identity = 86/138 (62.32%), Postives = 93/138 (67.39%), Query Frame = 1 

Query: 22  KYIFLADKVEIQDITKQTSLLVLVGPKSNQVKEHYAVLMYKQICFYFLFLVFMTNCCNPQ 81
           KYIF  DKVEIQDITKQT   VLVGPKSNQ                              
Sbjct: 185 KYIFFNDKVEIQDITKQTCFFVLVGPKSNQ------------------------------ 244

Query: 82  IMEALNLGSIAGEPYGTHQHFSANGMPITVGVGNVISEEGFSLLISPAVAGPVWKALVSL 141
           IME LNLG + G+PYGTHQHFS NGMPITVGVGNVISE+GFSLL+SPA AG VWK ++S 
Sbjct: 245 IMEELNLGDLVGQPYGTHQHFSVNGMPITVGVGNVISEKGFSLLMSPAAAGSVWKTILSQ 292

Query: 142 GAVPMGSRAWEMLRIFQG 160
           GA+PMGS AWE LRIFQG
Sbjct: 305 GAIPMGSNAWEKLRIFQG 292

The following BLAST results are available for this feature:
BLAST of Cla003474 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y1099_ARATH3.2e-3253.62Putative transferase At1g60990, chloroplastic OS=Arabidopsis thaliana GN=At1g609... [more]
BLAST of Cla003474 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJI9_CUCSA1.1e-4473.38Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417880 PE=3 SV=1[more]
M5XC04_PRUPE1.0e-3762.32Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006188mg PE=3 SV=1[more]
D7SZU7_VITVI3.0e-3760.87Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g02180 PE=3 SV=... [more]
A0A067EE69_CITSI1.6e-3560.14Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014411mg PE=3 SV=1[more]
A0A067EEH8_CITSI1.6e-3560.14Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014411mg PE=3 SV=1[more]
BLAST of Cla003474 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659097026|ref|XP_008449403.1|1.0e-5167.03PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X2 [Cucumis melo... [more]
gi|659097028|ref|XP_008449404.1|1.0e-5167.03PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X3 [Cucumis melo... [more]
gi|659097024|ref|XP_008449402.1|1.0e-5167.03PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X1 [Cucumis melo... [more]
gi|449444697|ref|XP_004140110.1|1.6e-4473.38PREDICTED: aminomethyltransferase, mitochondrial [Cucumis sativus][more]
gi|645223749|ref|XP_008218780.1|1.5e-3762.32PREDICTED: dimethylglycine dehydrogenase, mitochondrial [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006222GCV_T_N
IPR027266TrmE/GcvT_dom1
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016226 iron-sulfur cluster assembly
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003474Cla003474.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006222Glycine cleavage T-protein-like, N-terminalPFAMPF01571GCV_Tcoord: 27..160
score: 8.
IPR027266GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1GENE3DG3DSA:3.30.1360.120coord: 32..156
score: 2.
NoneNo IPR availableunknownSSF103025Folate-binding domaincoord: 89..162
score: 2.04E-13coord: 15..58
score: 2.04

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003474ClCG09G014040Watermelon (Charleston Gray)wcgwmB011
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003474Watermelon (97103) v2wmwmbB046
Cla003474Wax gourdwgowmB249