Cla003471 (gene) Watermelon (97103) v1

Overview
NameCla003471
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGlycine cleavage T protein (Aminomethyl transferase) (AHRD V1 **-- A0ZEW6_NODSP); contains Interpro domain(s) IPR017703 Folate-binding, YgfZ
LocationChr9 : 27752624 .. 27754271 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGCTCCCCAGAAAGAGCTTACCGACGAATTCAATGTACTCGAAGCTGGTCTATGGAATTCAATTTCTATCAACAAGGGTACTCATTTCTTGCCTTAATTTTATTTATTTATTTATTTATTTATTTATTTATTTATTATTATTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGGTACTCATTTCTTGCCGTAATTTTATTTATTTATTTATTTATTTATTATTATTATTTAAAATCGTAGACCCAAGGTGGATCGATAACTCAATTTTTAATCTCTATAGGTTGTTACAAGGGACAAGAGACAATATCTAGATTAATGACATATGATGGAGTAAAACAGAGATTGTGGGGACTTCAGCTATCAGATTCTGTGGAACCTGGCAGCCCGATAACCATTGATGGAAAAAGGGTAGCTCTTTTTATTTTAGTTTTCAACTTTTGTGGAAATTGAAATATTTTTCCAAATACTCCCCTAATCATGAACCTCCCTTTCCTATGTCAAGAACTATAGGATTTGAATTAGGGTGTACACAAGTTTGCCAGTCGATCGGCTGGCACACATACATCTGAAGTCGGTTTTCTTCTAAAACCAACACCGACCGAGCGATGTACACCCCTAATTTGAATGCTCTGAAGAACTCTCTTCGAAATATTGGACCCCGAAAAACTCACTGAAAAATTTCTCCTCACCTCGAACATGAAACTTCGAAACTGTCACTAATAGAATCTCTCCTTTAAATTATGAGCATGTTTTAGGTAGAATATGCATACTTTTTGATCCATGCGAAGAAATATTTTGTAGGTGGGAAAACTTACAAGCTATACACCAGGAAGAAAAGAGTCGGAGCATTTTGGTCTTGGCTACATCAAGAAGCGAGCTGCTTCCAGTGGAGACATTGTCATTGTTGGAGAAAACACCATTGGTAGGGTGATGGAAGTTCCATTTTTAGCTCGACAACAACCTCTATCCAACAGCCCAAGTAACACGCCTCAAAGCAGTGTACAATAG

mRNA sequence

ATGCCAGCTCCCCAGAAAGAGCTTACCGACGAATTCAATGTACTCGAAGCTGGTCTATGGAATTCAATTTCTATCAACAAGGGTTGTTACAAGGGACAAGAGACAATATCTAGATTAATGACATATGATGGAGTAAAACAGAGATTGTGGGGACTTCAGCTATCAGATTCTGTGGAACCTGGCAGCCCGATAACCATTGATGGAAAAAGGGTGGGAAAACTTACAAGCTATACACCAGGAAGAAAAGAGTCGGAGCATTTTGGTCTTGGCTACATCAAGAAGCGAGCTGCTTCCAGTGGAGACATTGTCATTGTTGGAGAAAACACCATTGGTAGGGTGATGGAAGTTCCATTTTTAGCTCGACAACAACCTCTATCCAACAGCCCAAGTAACACGCCTCAAAGCAGTGTACAATAG

Coding sequence (CDS)

ATGCCAGCTCCCCAGAAAGAGCTTACCGACGAATTCAATGTACTCGAAGCTGGTCTATGGAATTCAATTTCTATCAACAAGGGTTGTTACAAGGGACAAGAGACAATATCTAGATTAATGACATATGATGGAGTAAAACAGAGATTGTGGGGACTTCAGCTATCAGATTCTGTGGAACCTGGCAGCCCGATAACCATTGATGGAAAAAGGGTGGGAAAACTTACAAGCTATACACCAGGAAGAAAAGAGTCGGAGCATTTTGGTCTTGGCTACATCAAGAAGCGAGCTGCTTCCAGTGGAGACATTGTCATTGTTGGAGAAAACACCATTGGTAGGGTGATGGAAGTTCCATTTTTAGCTCGACAACAACCTCTATCCAACAGCCCAAGTAACACGCCTCAAAGCAGTGTACAATAG

Protein sequence

MPAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEPGSPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLARQQPLSNSPSNTPQSSVQ
Homology
[Close]
BLAST of Cla003471 vs. Swiss-Prot
Match: Y1099_ARATH (Putative transferase At1g60990, chloroplastic OS=Arabidopsis thaliana GN=At1g60990 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 5.4e-47
Identity = 93/130 (71.54%), Postives = 107/130 (82.31%), Query Frame = 1 

Query: 2   PAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEPG 61
           PAP++EL+ EFNVLEAGLWNSIS+NKGCYKGQETI+RLMTYDG+KQRL GL LS   EPG
Sbjct: 303 PAPERELSKEFNVLEAGLWNSISLNKGCYKGQETIARLMTYDGIKQRLCGLNLSAPSEPG 362

Query: 62  SPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLAR 121
           S IT+DGK+VGKLTSYT G+  S HFGLGYIKK+AAS G+ V VGE+  G V EVP+LAR
Sbjct: 363 STITVDGKKVGKLTSYTGGKNGSGHFGLGYIKKQAASIGNTVTVGEDISGIVSEVPYLAR 422

Query: 122 QQPLSNSPSN 132
           Q P S + S+
Sbjct: 423 QHPPSANSSS 432

[Close]
BLAST of Cla003471 vs. Swiss-Prot
Match: GCST_SYMTH (Aminomethyltransferase OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=gcvT PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.7e-06
Identity = 34/124 (27.42%), Postives = 66/124 (53.23%), Query Frame = 1 

Query: 1   MPAPQKELTDEFNVLEAGLWNSISINKGC-YKGQETISRLMTYDGVKQRLWGLQLSDSVE 60
           +P    E++D+ N LEAGL  ++ + KG  + G++ ++R+    G  ++L G+++ D   
Sbjct: 246 LPLYGHEISDQHNPLEAGLGFAVKLKKGVDFIGRDALARIKE-QGPTRKLVGIEMIDRGV 305

Query: 61  P--GSPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSG---DIVIVGENTIGRVM 119
           P  G P+ + G+ VG++T+ +      ++  L Y+    ++ G   +++I G     RV+
Sbjct: 306 PRQGYPVAVGGEVVGEVTTGSFSPTLEKNIALAYVPVAHSAVGTEVEVIIRGRALKARVV 365

[Close]
BLAST of Cla003471 vs. TrEMBL
Match: A0A0A0KJI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417880 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.2e-66
Identity = 128/139 (92.09%), Postives = 134/139 (96.40%), Query Frame = 1 

Query: 1   MPAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEP 60
           MPAPQKELTDEFNVLEAGLWNSIS+NKGCYKGQETISRL+TYDGVKQRLWGLQLSDSVEP
Sbjct: 307 MPAPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 366

Query: 61  GSPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLA 120
           GSPITIDGKRVGKLTSY PGRKESEHFGLGYIKK+AAS GD VIVGENTIG+V+EVPFLA
Sbjct: 367 GSPITIDGKRVGKLTSYAPGRKESEHFGLGYIKKKAASVGDSVIVGENTIGKVVEVPFLA 426

Query: 121 RQQPLSN-SPSNTPQSSVQ 139
           RQQPLSN S SNTP+SSVQ
Sbjct: 427 RQQPLSNSSSSNTPESSVQ 445

[Close]
BLAST of Cla003471 vs. TrEMBL
Match: A0A061E836_THECC (Glycine cleavage T-protein family isoform 1 OS=Theobroma cacao GN=TCM_007204 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.6e-50
Identity = 97/129 (75.19%), Postives = 114/129 (88.37%), Query Frame = 1 

Query: 2   PAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEPG 61
           PAP KELT+EFNVLEAGLWNSIS+NKGCYKGQETISRL+TYDGVKQRLWG+ LS  VEPG
Sbjct: 299 PAPGKELTNEFNVLEAGLWNSISMNKGCYKGQETISRLITYDGVKQRLWGIHLSAPVEPG 358

Query: 62  SPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLAR 121
           SPIT++GK+VGKLTSYT GRKES+HF LGYIK++AAS GD V+VGEN +G V++VPFL++
Sbjct: 359 SPITVNGKKVGKLTSYTTGRKESDHFALGYIKRQAASCGDTVVVGENILGTVVDVPFLSQ 418

Query: 122 QQPLSNSPS 131
           Q P +   S
Sbjct: 419 QSPPTKKSS 427

[Close]
BLAST of Cla003471 vs. TrEMBL
Match: A0A061E065_THECC (Glycine cleavage T-protein family isoform 2 OS=Theobroma cacao GN=TCM_007204 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.6e-50
Identity = 97/129 (75.19%), Postives = 114/129 (88.37%), Query Frame = 1 

Query: 2   PAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEPG 61
           PAP KELT+EFNVLEAGLWNSIS+NKGCYKGQETISRL+TYDGVKQRLWG+ LS  VEPG
Sbjct: 265 PAPGKELTNEFNVLEAGLWNSISMNKGCYKGQETISRLITYDGVKQRLWGIHLSAPVEPG 324

Query: 62  SPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLAR 121
           SPIT++GK+VGKLTSYT GRKES+HF LGYIK++AAS GD V+VGEN +G V++VPFL++
Sbjct: 325 SPITVNGKKVGKLTSYTTGRKESDHFALGYIKRQAASCGDTVVVGENILGTVVDVPFLSQ 384

Query: 122 QQPLSNSPS 131
           Q P +   S
Sbjct: 385 QSPPTKKSS 393

[Close]
BLAST of Cla003471 vs. TrEMBL
Match: D7SZU7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g02180 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 99/127 (77.95%), Postives = 110/127 (86.61%), Query Frame = 1 

Query: 2   PAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEPG 61
           PAP KELT+EFNVLEAGLWNSIS+NKGCYKGQETISRL+TYDGVKQRLWG+ LS   EPG
Sbjct: 301 PAPGKELTNEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGISLSGPAEPG 360

Query: 62  SPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLAR 121
           SPIT DGK+VGKLTSY  GR ESEHFGLGYIK++AAS+G+ VIVG+N  G V+EVPFLA 
Sbjct: 361 SPITADGKKVGKLTSYACGRTESEHFGLGYIKRQAASNGNTVIVGDNIAGTVVEVPFLAW 420

Query: 122 QQPLSNS 129
           Q P S S
Sbjct: 421 QSPPSKS 427

[Close]
BLAST of Cla003471 vs. TrEMBL
Match: A0A0B0P058_GOSAR (GcvT OS=Gossypium arboreum GN=F383_23174 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-49
Identity = 95/123 (77.24%), Postives = 109/123 (88.62%), Query Frame = 1 

Query: 2   PAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEPG 61
           PAP KELT++FNVLEAGLWNSIS+NKGCYKGQETISRL+TYDGVKQRLWG+ LS   EPG
Sbjct: 301 PAPGKELTNDFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGIHLSAPAEPG 360

Query: 62  SPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLAR 121
           SPIT++GK+VGKLTSYT GRKE +HF LGYIK++AAS GD VIVGE  IG V++VPFL+R
Sbjct: 361 SPITVNGKKVGKLTSYTTGRKECDHFALGYIKRKAASDGDTVIVGEKIIGTVVDVPFLSR 420

Query: 122 QQP 125
           Q P
Sbjct: 421 QSP 423

[Close]
BLAST of Cla003471 vs. NCBI nr
Match: gi|449444697|ref|XP_004140110.1| (PREDICTED: aminomethyltransferase, mitochondrial [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 8.9e-66
Identity = 128/139 (92.09%), Postives = 134/139 (96.40%), Query Frame = 1 

Query: 1   MPAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEP 60
           MPAPQKELTDEFNVLEAGLWNSIS+NKGCYKGQETISRL+TYDGVKQRLWGLQLSDSVEP
Sbjct: 307 MPAPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 366

Query: 61  GSPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLA 120
           GSPITIDGKRVGKLTSY PGRKESEHFGLGYIKK+AAS GD VIVGENTIG+V+EVPFLA
Sbjct: 367 GSPITIDGKRVGKLTSYAPGRKESEHFGLGYIKKKAASVGDSVIVGENTIGKVVEVPFLA 426

Query: 121 RQQPLSN-SPSNTPQSSVQ 139
           RQQPLSN S SNTP+SSVQ
Sbjct: 427 RQQPLSNSSSSNTPESSVQ 445

[Close]
BLAST of Cla003471 vs. NCBI nr
Match: gi|659097028|ref|XP_008449404.1| (PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X3 [Cucumis melo])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-64
Identity = 125/139 (89.93%), Postives = 133/139 (95.68%), Query Frame = 1 

Query: 1   MPAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEP 60
           MP+PQKELTDEFNVLEAGLWNSIS+NKGCYKGQETISRL+TYDGVKQRLWGLQLSDSVEP
Sbjct: 180 MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 239

Query: 61  GSPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLA 120
           GSPITIDGKRVGKLTSY PGRKESEHFGLGYIKK+AAS GD VIVGE+T G V+EVPFLA
Sbjct: 240 GSPITIDGKRVGKLTSYAPGRKESEHFGLGYIKKKAASIGDTVIVGEDTTGTVVEVPFLA 299

Query: 121 RQQPLSN-SPSNTPQSSVQ 139
           RQQPLSN SPS+TP+SSVQ
Sbjct: 300 RQQPLSNSSPSSTPESSVQ 318

[Close]
BLAST of Cla003471 vs. NCBI nr
Match: gi|659097026|ref|XP_008449403.1| (PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-64
Identity = 125/139 (89.93%), Postives = 133/139 (95.68%), Query Frame = 1 

Query: 1   MPAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEP 60
           MP+PQKELTDEFNVLEAGLWNSIS+NKGCYKGQETISRL+TYDGVKQRLWGLQLSDSVEP
Sbjct: 218 MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 277

Query: 61  GSPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLA 120
           GSPITIDGKRVGKLTSY PGRKESEHFGLGYIKK+AAS GD VIVGE+T G V+EVPFLA
Sbjct: 278 GSPITIDGKRVGKLTSYAPGRKESEHFGLGYIKKKAASIGDTVIVGEDTTGTVVEVPFLA 337

Query: 121 RQQPLSN-SPSNTPQSSVQ 139
           RQQPLSN SPS+TP+SSVQ
Sbjct: 338 RQQPLSNSSPSSTPESSVQ 356

[Close]
BLAST of Cla003471 vs. NCBI nr
Match: gi|659097024|ref|XP_008449402.1| (PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-64
Identity = 125/139 (89.93%), Postives = 133/139 (95.68%), Query Frame = 1 

Query: 1   MPAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEP 60
           MP+PQKELTDEFNVLEAGLWNSIS+NKGCYKGQETISRL+TYDGVKQRLWGLQLSDSVEP
Sbjct: 274 MPSPQKELTDEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGLQLSDSVEP 333

Query: 61  GSPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLA 120
           GSPITIDGKRVGKLTSY PGRKESEHFGLGYIKK+AAS GD VIVGE+T G V+EVPFLA
Sbjct: 334 GSPITIDGKRVGKLTSYAPGRKESEHFGLGYIKKKAASIGDTVIVGEDTTGTVVEVPFLA 393

Query: 121 RQQPLSN-SPSNTPQSSVQ 139
           RQQPLSN SPS+TP+SSVQ
Sbjct: 394 RQQPLSNSSPSSTPESSVQ 412

[Close]
BLAST of Cla003471 vs. NCBI nr
Match: gi|590687242|ref|XP_007042608.1| (Glycine cleavage T-protein family isoform 2 [Theobroma cacao])

HSP 1 Score: 206.8 bits (525), Expect = 2.4e-50
Identity = 97/129 (75.19%), Postives = 114/129 (88.37%), Query Frame = 1 

Query: 2   PAPQKELTDEFNVLEAGLWNSISINKGCYKGQETISRLMTYDGVKQRLWGLQLSDSVEPG 61
           PAP KELT+EFNVLEAGLWNSIS+NKGCYKGQETISRL+TYDGVKQRLWG+ LS  VEPG
Sbjct: 265 PAPGKELTNEFNVLEAGLWNSISMNKGCYKGQETISRLITYDGVKQRLWGIHLSAPVEPG 324

Query: 62  SPITIDGKRVGKLTSYTPGRKESEHFGLGYIKKRAASSGDIVIVGENTIGRVMEVPFLAR 121
           SPIT++GK+VGKLTSYT GRKES+HF LGYIK++AAS GD V+VGEN +G V++VPFL++
Sbjct: 325 SPITVNGKKVGKLTSYTTGRKESDHFALGYIKRQAASCGDTVVVGENILGTVVDVPFLSQ 384

Query: 122 QQPLSNSPS 131
           Q P +   S
Sbjct: 385 QSPPTKKSS 393

The following BLAST results are available for this feature:
BLAST of Cla003471 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y1099_ARATH5.4e-4771.54Putative transferase At1g60990, chloroplastic OS=Arabidopsis thaliana GN=At1g609... [more]
GCST_SYMTH4.7e-0627.42Aminomethyltransferase OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN... [more]
BLAST of Cla003471 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJI9_CUCSA6.2e-6692.09Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417880 PE=3 SV=1[more]
A0A061E836_THECC1.6e-5075.19Glycine cleavage T-protein family isoform 1 OS=Theobroma cacao GN=TCM_007204 PE=... [more]
A0A061E065_THECC1.6e-5075.19Glycine cleavage T-protein family isoform 2 OS=Theobroma cacao GN=TCM_007204 PE=... [more]
D7SZU7_VITVI1.1e-4977.95Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g02180 PE=3 SV=... [more]
A0A0B0P058_GOSAR1.8e-4977.24GcvT OS=Gossypium arboreum GN=F383_23174 PE=3 SV=1[more]
BLAST of Cla003471 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444697|ref|XP_004140110.1|8.9e-6692.09PREDICTED: aminomethyltransferase, mitochondrial [Cucumis sativus][more]
gi|659097028|ref|XP_008449404.1|2.2e-6489.93PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X3 [Cucumis melo... [more]
gi|659097026|ref|XP_008449403.1|2.2e-6489.93PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X2 [Cucumis melo... [more]
gi|659097024|ref|XP_008449402.1|2.2e-6489.93PREDICTED: dimethylglycine dehydrogenase, mitochondrial isoform X1 [Cucumis melo... [more]
gi|590687242|ref|XP_007042608.1|2.4e-5075.19Glycine cleavage T-protein family isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013977GCV_T_C
IPR017703YgfZ/GcvT_CS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006544 glycine metabolic process
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0032259 methylation
biological_process GO:0006566 threonine metabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0009507 chloroplast
molecular_function GO:0004047 aminomethyltransferase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016740 transferase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU51490watermelon EST collection version 2.0transcribed_cluster
WMU52571watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003471Cla003471.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU51490WMU51490transcribed_cluster
WMU52571WMU52571transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013977Glycine cleavage T-protein, C-terminal barrel domainGENE3DG3DSA:2.40.30.110coord: 47..105
score: 2.
IPR013977Glycine cleavage T-protein, C-terminal barrel domainPFAMPF08669GCV_T_Ccoord: 28..104
score: 1.6
IPR017703YgfZ/GcvT conserved siteTIGRFAMsTIGR03317TIGR03317coord: 2..53
score: 1.0
NoneNo IPR availableunknownSSF103025Folate-binding domaincoord: 2..39
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003471Cla97C09G176490Watermelon (97103) v2wmwmbB046
Cla003471ClCG09G014030Watermelon (Charleston Gray)wcgwmB011
Cla003471Bhi05G000597Wax gourdwgowmB249
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None