Cla003463 (gene) Watermelon (97103) v1

Overview
NameCla003463
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 27455999 .. 27457031 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCAAACAGAGTCCGGTAAACGCATATCCAGCATATGCAACGATATCGAGTAACGGTGCCTCCCCACTTCCCAGTGATAATAGTGTTACTTTAAGCAGCATGACTTGCATAAACCAACCGAGCAATCCCTTGATGAACAACCAACTCAAAGCTTCTGGAGTAAACCTACAATCATTTTAGGAATATGATAATAATTAATAATCATATTGATTCTTTGTGATTAGGTAGTAGTGATTGAGATATGATAGAGAAGGGTTTCTGACAAAGATGAGAAGATCAACGTTTGAGTGAAACAAAGTCTGCAAACATATCAGAGGGGGCATCCACATTCACGCTACTTAAGCAGCCCAAGTACCAAACTGATGAGGAGGATACAAATCCTAATCTACTAAGCATGGAAGAATAGGAATGATGATTTCATCAAAGACGTTCAAATCTTAAATATAGTGATAAATCGTGAGAATTATTTGTAAATATTTCATAGAAAGTTGAATATTGCAATCAAAACCCCCTCTCCATCCCACCCATTAACCTTATTGCATTTTCTGCATCGGCCTCCAATTCTAGGACTTATGCAAGTCTAGGACTTTCAGATATTGCTCCAGTTTAGGGAAAAGGGAGAAAAGGTAATACCGGAAGGGAACAAAACTTGGCATTCCATATTTCGTGCTTAAGATTAGAAAATATTGAAAAATGAACTTATTTTGTGCTTGGAATTAGGAAACAAATATGCATCCCTAATGGAAAATTGAATTTCAAGAAAGATCAACTACTTTTGACAAACCTTTTTCTGTAGAAGCATTTCTTCTCTAAGAAAATGAATTTCCAAGTAATCAAAATTGTCCAAATTTTCTGTGCTTCTGCAGCAGGTCACTCTTTCACGAAGGGAGGATTTCTTGTGCTGGAAAAAAAGAGTTCGGGTTTGTTCTCGGGTAAATCTGCTTTGGAAGCTCTCCAAGAGAAAAGGAGGGTGCTGGAGGAAGGTCTGAGCAACCAGATTTGGGATGGTAAAATTCCAAAGAGTTGA

mRNA sequence

ATGGCAGCCAAACAGAGTCCGGTAAACGCATATCCAGCATATGCAACGATATCGAGTAACGGTGCCTCCCCACTTCCCAGTGATAATAGTGTTACTTTAAGCAGCATGACTTGCATAAACCAACCGAGCAATCCCTTGATGAACAACCAACTCAAAGCTTCTGGAAAGCATTTCTTCTCTAAGAAAATGAATTTCCAAGTAATCAAAATTGTCCAAATTTTCTGTGCTTCTGCAGCAGGTCACTCTTTCACGAAGGGAGGATTTCTTGTGCTGGAAAAAAAGAGTTCGGGTTTGTTCTCGGGTAAATCTGCTTTGGAAGCTCTCCAAGAGAAAAGGAGGGTGCTGGAGGAAGGTCTGAGCAACCAGATTTGGGATGGTAAAATTCCAAAGAGTTGA

Coding sequence (CDS)

ATGGCAGCCAAACAGAGTCCGGTAAACGCATATCCAGCATATGCAACGATATCGAGTAACGGTGCCTCCCCACTTCCCAGTGATAATAGTGTTACTTTAAGCAGCATGACTTGCATAAACCAACCGAGCAATCCCTTGATGAACAACCAACTCAAAGCTTCTGGAAAGCATTTCTTCTCTAAGAAAATGAATTTCCAAGTAATCAAAATTGTCCAAATTTTCTGTGCTTCTGCAGCAGGTCACTCTTTCACGAAGGGAGGATTTCTTGTGCTGGAAAAAAAGAGTTCGGGTTTGTTCTCGGGTAAATCTGCTTTGGAAGCTCTCCAAGAGAAAAGGAGGGTGCTGGAGGAAGGTCTGAGCAACCAGATTTGGGATGGTAAAATTCCAAAGAGTTGA

Protein sequence

MAAKQSPVNAYPAYATISSNGASPLPSDNSVTLSSMTCINQPSNPLMNNQLKASGKHFFSKKMNFQVIKIVQIFCASAAGHSFTKGGFLVLEKKSSGLFSGKSALEALQEKRRVLEEGLSNQIWDGKIPKS
Homology
[Close]
BLAST of Cla003463 vs. NCBI nr
Match: gi|297736318|emb|CBI24956.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 7  PVNAYPAYATISSNGASPLPSDNSVTLSSMTCINQPSNPLMNNQLKASGKHFFSKKMN 65
          P  +   YAT+S  GASPL ++++ T SS TC NQP+NPLMN+Q +ASG +    ++N
Sbjct: 14 PCESVRCYATMSRKGASPLSNESNDTFSSETCKNQPTNPLMNSQFRASGLNLAENEIN 71

The following BLAST results are available for this feature:
BLAST of Cla003463 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|297736318|emb|CBI24956.3|2.0e-0648.28unnamed protein product [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU30826watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003463Cla003463.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU30826WMU30826transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003463Cucurbita moschata (Rifu)cmowmB070
Cla003463Watermelon (Charleston Gray)wcgwmB011
Cla003463Cucurbita pepo (Zucchini)cpewmB631
Cla003463Bottle gourd (USVL1VR-Ls)lsiwmB228
Cla003463Silver-seed gourdcarwmB0734
Cla003463Watermelon (97103) v2wmwmbB046
Cla003463Wax gourdwgowmB249