Cla003460 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003460
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006927 Protein of unknown function DUF639
Location	Chr9 : 27418804 .. 27418962 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGTTAGAGAAGAGGCGTTTACGCGTATTGCACCAGCTATTTCTGGTGTAGCAGATCGATCCACGGTACATAATCTATTCAAGGCCCTTGCGGGTGACGGACAGAGCATCTCTTTGAGTTTGTGGCTCAAATATGTTGATGAACTGCTCAAGTGA

mRNA sequence

ATGCTAGTTAGAGAAGAGGCGTTTACGCGTATTGCACCAGCTATTTCTGGTGTAGCAGATCGATCCACGGTACATAATCTATTCAAGGCCCTTGCGGGTGACGGACAGAGCATCTCTTTGAGTTTGTGGCTCAAATATGTTGATGAACTGCTCAAGTGA

Coding sequence (CDS)

ATGCTAGTTAGAGAAGAGGCGTTTACGCGTATTGCACCAGCTATTTCTGGTGTAGCAGATCGATCCACGGTACATAATCTATTCAAGGCCCTTGCGGGTGACGGACAGAGCATCTCTTTGAGTTTGTGGCTCAAATATGTTGATGAACTGCTCAAGTGA

Protein sequence

MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDGQSISLSLWLKYVDELLK

Homology

[Close]

BLAST of Cla003460 vs. TrEMBL
Match: A0A0A0LY67_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665350 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.2e-19
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1


Query: 1  MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDGQSISLSLWLKYVDELLK 53
          MLVREEAFTRIAPAISGVADRSTVHNLFKALAGD QSISLSLWLKYVDELLK
Sbjct: 30 MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDEQSISLSLWLKYVDELLK 81

[Close]

BLAST of Cla003460 vs. TrEMBL
Match: M5XJZ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002078mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-15
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1


Query: 2   LVREEAFTRIAPAISGVADRSTVHNLFKALAGDGQSISLSLWLKYVDELLK 53
           LVREEAF R+APAISGVADRST HNLFKALAGD Q ISLSLWL YVDEL+K
Sbjct: 118 LVREEAFVRVAPAISGVADRSTAHNLFKALAGDEQGISLSLWLTYVDELIK 168

[Close]

BLAST of Cla003460 vs. TrEMBL
Match: B9GEX1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s21780g PE=4 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-14
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 1   MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDGQSISLSLWLKYVDELLK 53
           MLV EEAF RIAPAISG+ADRSTVHNLF+ALAGD Q ISL  W+ YVDELLK
Sbjct: 212 MLVGEEAFARIAPAISGIADRSTVHNLFRALAGDQQGISLGTWVTYVDELLK 263

[Close]

BLAST of Cla003460 vs. TrEMBL
Match: V4V0B9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000484mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-13
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1


Query: 2   LVREEAFTRIAPAISGVADRSTVHNLFKALAGDGQSISLSLWLKYVDELLK 53
           LV +EAF RI PAISG+ADR+TVHNLF+ALAGD Q ISLSLWL Y+DELLK
Sbjct: 88  LVGKEAFVRITPAISGLADRATVHNLFEALAGDEQGISLSLWLTYIDELLK 138

[Close]

BLAST of Cla003460 vs. TrEMBL
Match: B9SRI4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1411120 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.8e-13
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 2   LVREEAFTRIAPAISGVADRSTVHNLFKALAGDGQSISLSLWLKYVDELLK 53
           LVREEAF RIAPAISGVADR T HNLF+ALAGD + ISL LWL Y++ELLK
Sbjct: 199 LVREEAFVRIAPAISGVADRPTAHNLFRALAGDVEGISLGLWLTYINELLK 249

[Close]

BLAST of Cla003460 vs. NCBI nr
Match: gi|778664216|ref|XP_011660244.1| (PREDICTED: uncharacterized protein LOC101209123 isoform X1 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1


Query: 1   MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDGQSISLSLWLKYVDELLK 53
           MLVREEAFTRIAPAISGVADRSTVHNLFKALAGD QSISLSLWLKYVDELLK
Sbjct: 222 MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDEQSISLSLWLKYVDELLK 273

[Close]

BLAST of Cla003460 vs. NCBI nr
Match: gi|700211627|gb|KGN66723.1| (hypothetical protein Csa_1G665350 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1


Query: 1  MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDGQSISLSLWLKYVDELLK 53
          MLVREEAFTRIAPAISGVADRSTVHNLFKALAGD QSISLSLWLKYVDELLK
Sbjct: 30 MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDEQSISLSLWLKYVDELLK 81

[Close]

BLAST of Cla003460 vs. NCBI nr
Match: gi|778664223|ref|XP_011660246.1| (PREDICTED: uncharacterized protein LOC101209123 isoform X3 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1


Query: 1   MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDGQSISLSLWLKYVDELLK 53
           MLVREEAFTRIAPAISGVADRSTVHNLFKALAGD QSISLSLWLKYVDELLK
Sbjct: 190 MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDEQSISLSLWLKYVDELLK 241

[Close]

BLAST of Cla003460 vs. NCBI nr
Match: gi|778664226|ref|XP_011660247.1| (PREDICTED: uncharacterized protein LOC101209123 isoform X4 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1


Query: 1   MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDGQSISLSLWLKYVDELLK 53
           MLVREEAFTRIAPAISGVADRSTVHNLFKALAGD QSISLSLWLKYVDELLK
Sbjct: 83  MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDEQSISLSLWLKYVDELLK 134

[Close]

BLAST of Cla003460 vs. NCBI nr
Match: gi|659086615|ref|XP_008444028.1| (PREDICTED: uncharacterized protein LOC103487477 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 9.9e-18
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1


Query: 1   MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDGQSISLSLWLKYVDELLK 53
           MLVREEAFTRIAPAISGVADRSTVHNLFKALAGD +SISLSLWLKYVDEL++
Sbjct: 222 MLVREEAFTRIAPAISGVADRSTVHNLFKALAGDKESISLSLWLKYVDELIR 273

The following BLAST results are available for this feature:

BLAST of Cla003460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY67_CUCSA	8.2e-19	98.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665350 PE=4 SV=1	[more]
M5XJZ8_PRUPE	1.1e-15	86.27	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002078mg PE=4 SV=1	[more]
B9GEX1_POPTR	2.1e-14	80.77	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s21780g PE=4 SV=2	[more]
V4V0B9_9ROSI	1.8e-13	78.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000484mg PE=4 SV=1	[more]
B9SRI4_RICCO	1.8e-13	78.43	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1411120 PE=4 SV=1	[more]

BLAST of Cla003460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778664216\|ref\|XP_011660244.1\|	1.2e-18	98.08	PREDICTED: uncharacterized protein LOC101209123 isoform X1 [Cucumis sativus]	[more]
gi\|700211627\|gb\|KGN66723.1\|	1.2e-18	98.08	hypothetical protein Csa_1G665350 [Cucumis sativus]	[more]
gi\|778664223\|ref\|XP_011660246.1\|	1.2e-18	98.08	PREDICTED: uncharacterized protein LOC101209123 isoform X3 [Cucumis sativus]	[more]
gi\|778664226\|ref\|XP_011660247.1\|	1.2e-18	98.08	PREDICTED: uncharacterized protein LOC101209123 isoform X4 [Cucumis sativus]	[more]
gi\|659086615\|ref\|XP_008444028.1\|	9.9e-18	92.31	PREDICTED: uncharacterized protein LOC103487477 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006927	DUF639

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003460	Cla003460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006927	Protein of unknown function DUF639	PFAM	PF04842	DUF639	coord: 3..52 score: 8.4
None	No IPR available	PANTHER	PTHR31860	FAMILY NOT NAMED	coord: 1..52 score: 1.1
None	No IPR available	PANTHER	PTHR31860:SF3	SUBFAMILY NOT NAMED	coord: 1..52 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003460	Cucurbita pepo (Zucchini)	cpewmB631
Cla003460	Bottle gourd (USVL1VR-Ls)	lsiwmB228
Cla003460	Silver-seed gourd	carwmB0734
Cla003460	Watermelon (97103) v2	wmwmbB046
Cla003460	Wax gourd	wgowmB249
Cla003460	Cucurbita moschata (Rifu)	cmowmB070
Cla003460	Cucurbita moschata (Rifu)	cmowmB467
Cla003460	Watermelon (Charleston Gray)	wcgwmB011