Cla003459 (gene) Watermelon (97103) v1

Overview
NameCla003459
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1); contains Interpro domain(s) IPR006927 Protein of unknown function DUF639
LocationChr9 : 27410276 .. 27411850 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGCTTGACTGGACATAAAATGCAGAGAATATTTAAAGCTCTTGTGCATGAATCTGTTTACAATGATGCTCGCAGTCTGGTAGAGTATTGCTGTTTTAGATTCTTGTCAAGGGACAGCTCAAATATTCATCCTTCACTCAGTGTAAGTACTTCTTTCTTTTTTTGTTTTTTCTTATAACAGAAAATTTTAGCAGCAATGCAACTTGAATTTGTCAGCTCTTGGGTTTTTATGGTCTCTTCTTGGTGTGCTCTTTCTGATGTCCTTTTTGGATATTCTTTTCAAGTTTTATGTCTCAATTGGTTTTGATTTTATTCTTCCATTGTATTTTTTTCTTATTCTCTTCGCTCTCTTATGGAGTTTGAATCTTTTAGCGTTAGGCTCTTTTCATTTCATTTCATCAATAAAAAGTTTTGTTTCTTGTTAAAACAAAAAATCACAATATGAAGGAACAATATTTCTCATCTTCTGGGAGGCTGTGAACTAACAATGAAAGCAAAAATCCTTTGGATTAATATTGTTAGCTCTAATTTGGGATTGAAAGAACTCTTTAGATTTTTGAATTCAAAAGATATTTTTTGGATGAAAGATTTTACCTAATCAAACATTCAAAGACTTCTTGATGTGCTATTTTAAAATACTTTTGCAATTTCTCCCCTTTTTTTTTGGACATTTACGCTTGTTAGAATATGTTAAATCACTGATCAACTCAAAAGCTTAAGCTGATGGGTGAAAGAAAATTTACTATTAGATCATCTAACACTCCCCTCACTTGTGGGCTTGAAATATGTAGAATACCCAATTGGTAGAAATCAATATTAATTGGGGAAGAAATAACATTACGGGGGTTTAAACAAAAGACCTCTTAAACCGCTTGCTTTGATATCATATTAAATCATCGATTGACCCAAAAGCTTAAGCTAATGGGTGAAGACAAATTTAATATTATATCATCTAAGATAATAATTTTTTTAACCTGTTCCCTCTTGCTCTTTCACATTTTGTAACTTTTCTTTGCATAAATGGAAAGTTTTAATTTCTTAAAAGAAACTATCATATTTTAATGATTAGTCCGATATTATCTTTTCGAATTAGTATATACAAACAACCGAACAATATGCTATAATCTTGAATCCATACCAATTAACATAATTTAAAATAATAAATAAAAAGGAAACTATTAAACTTAAAATAATAAGTAAAAAAGAAACCATTAAACTTTCTAAGTTAATAGGGATACAACCTTCCAATGAATGATGTCGCCAAGGAACTTGACCAAACACACACACAAAAAGAAAAAAAAAAATGAACAACTCTTTTGATATTTTCAAATTAGTATATGTTGATGACCAGCAAAATAATGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATGAGTAAATTCTGTTTATTTCTGCAGGATCCCACATTTCAGAGATTGATATTCATAACAATGCTTGCTTGGGAAAATCCATATCACGAGCATACTAATGTTTCTGAGGAAATTTCCTTTCAGGTTGTTAATGCAATATTCCGTCTTATGAATTTCCTTGTTATGAGATAA

mRNA sequence

ATGAATGGCTTGACTGGACATAAAATGCAGAGAATATTTAAAGCTCTTGTGCATGAATCTGTTTACAATGATGCTCGCAGTCTGGTAGAGTATTGCTGTTTTAGATTCTTGTCAAGGGACAGCTCAAATATTCATCCTTCACTCAGTGATCCCACATTTCAGAGATTGATATTCATAACAATGCTTGCTTGGGAAAATCCATATCACGAGCATACTAATGTTTCTGAGGAAATTTCCTTTCAGGTTGTTAATGCAATATTCCGTCTTATGAATTTCCTTGTTATGAGATAA

Coding sequence (CDS)

ATGAATGGCTTGACTGGACATAAAATGCAGAGAATATTTAAAGCTCTTGTGCATGAATCTGTTTACAATGATGCTCGCAGTCTGGTAGAGTATTGCTGTTTTAGATTCTTGTCAAGGGACAGCTCAAATATTCATCCTTCACTCAGTGATCCCACATTTCAGAGATTGATATTCATAACAATGCTTGCTTGGGAAAATCCATATCACGAGCATACTAATGTTTCTGAGGAAATTTCCTTTCAGGTTGTTAATGCAATATTCCGTCTTATGAATTTCCTTGTTATGAGATAA

Protein sequence

MNGLTGHKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSDPTFQRLIFITMLAWENPYHEHTNVSEEISFQVVNAIFRLMNFLVMR
Homology
[Close]
BLAST of Cla003459 vs. TrEMBL
Match: A0A0A0M096_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665360 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-40
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 1 

Query: 1  MNGLTGHKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSDPTFQRLIFIT 60
          MNGLTG KMQRIFKALVHESVYNDARSL+EYCCFRFLSRDSSNIHPSLS+PTFQRLIFIT
Sbjct: 1  MNGLTGQKMQRIFKALVHESVYNDARSLIEYCCFRFLSRDSSNIHPSLSEPTFQRLIFIT 60

Query: 61 MLAWENPYHEHTNVSEEISFQVVNAI 87
          MLAWENPYHEH NVSEEISFQV+NAI
Sbjct: 61 MLAWENPYHEHANVSEEISFQVINAI 86

[Close]
BLAST of Cla003459 vs. TrEMBL
Match: M5XJZ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002078mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.2e-29
Identity = 66/82 (80.49%), Postives = 71/82 (86.59%), Query Frame = 1 

Query: 1   MNGLTGHKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSDPTFQRLIFIT 60
           MNGLTG KMQRIFKALV ES YNDAR+LVEYCCFRFLSRD+S+IHPSL +P FQRLIFIT
Sbjct: 34  MNGLTGQKMQRIFKALVSESTYNDARNLVEYCCFRFLSRDNSDIHPSLKEPAFQRLIFIT 93

Query: 61  MLAWENPYHEH-TNVSEEISFQ 82
           MLAWENPY E   N SE+ SFQ
Sbjct: 94  MLAWENPYQEDLANGSEKASFQ 115

[Close]
BLAST of Cla003459 vs. TrEMBL
Match: A5BC42_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041585 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-27
Identity = 61/87 (70.11%), Postives = 74/87 (85.06%), Query Frame = 1 

Query: 1   MNGLTGHKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSDPTFQRLIFIT 60
           MNGLTG KMQ+IF+ALV E+VYNDAR+LVEYCCFRFLSRDSS+IHP L +P FQRLIFIT
Sbjct: 135 MNGLTGEKMQKIFRALVPETVYNDARNLVEYCCFRFLSRDSSDIHPCLKEPAFQRLIFIT 194

Query: 61  MLAWENPYHEHTNVS----EEISFQVV 84
           MLAWENPY+E  + +    E+ SF+++
Sbjct: 195 MLAWENPYYEANDSNAIGLEKASFKII 221

[Close]
BLAST of Cla003459 vs. TrEMBL
Match: A0A0R0IYB2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G185700 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-27
Identity = 63/82 (76.83%), Postives = 72/82 (87.80%), Query Frame = 1 

Query: 1  MNGLTGHKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSDPTFQRLIFIT 60
          MNGLTG KMQ+IF+ALV ESVYNDAR+LVEYCCFRFLSRD S+IHPSL DP FQRLIFIT
Sbjct: 1  MNGLTGKKMQKIFEALVPESVYNDARNLVEYCCFRFLSRDGSDIHPSLQDPAFQRLIFIT 60

Query: 61 MLAWENPY-HEHTNVSEEISFQ 82
          MLAWENPY ++ ++ SE+ S Q
Sbjct: 61 MLAWENPYTNDLSSNSEKASLQ 82

[Close]
BLAST of Cla003459 vs. TrEMBL
Match: A0A0R0IP01_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G185700 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-27
Identity = 63/82 (76.83%), Postives = 72/82 (87.80%), Query Frame = 1 

Query: 1   MNGLTGHKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSDPTFQRLIFIT 60
           MNGLTG KMQ+IF+ALV ESVYNDAR+LVEYCCFRFLSRD S+IHPSL DP FQRLIFIT
Sbjct: 68  MNGLTGKKMQKIFEALVPESVYNDARNLVEYCCFRFLSRDGSDIHPSLQDPAFQRLIFIT 127

Query: 61  MLAWENPY-HEHTNVSEEISFQ 82
           MLAWENPY ++ ++ SE+ S Q
Sbjct: 128 MLAWENPYTNDLSSNSEKASLQ 149

[Close]
BLAST of Cla003459 vs. NCBI nr
Match: gi|700211628|gb|KGN66724.1| (hypothetical protein Csa_1G665360 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.6e-40
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 1 

Query: 1  MNGLTGHKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSDPTFQRLIFIT 60
          MNGLTG KMQRIFKALVHESVYNDARSL+EYCCFRFLSRDSSNIHPSLS+PTFQRLIFIT
Sbjct: 1  MNGLTGQKMQRIFKALVHESVYNDARSLIEYCCFRFLSRDSSNIHPSLSEPTFQRLIFIT 60

Query: 61 MLAWENPYHEHTNVSEEISFQVVNAI 87
          MLAWENPYHEH NVSEEISFQV+NAI
Sbjct: 61 MLAWENPYHEHANVSEEISFQVINAI 86

[Close]
BLAST of Cla003459 vs. NCBI nr
Match: gi|778664216|ref|XP_011660244.1| (PREDICTED: uncharacterized protein LOC101209123 isoform X1 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 7.2e-38
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 1   MNGLTGHKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSDPTFQRLIFIT 60
           MNGLTG KMQRIFKALVHESVYNDARSL+EYCCFRFLSRDSSNIHPSLS+PTFQRLIFIT
Sbjct: 140 MNGLTGQKMQRIFKALVHESVYNDARSLIEYCCFRFLSRDSSNIHPSLSEPTFQRLIFIT 199

Query: 61  MLAWENPYHEHTNVSEEISFQ 82
           MLAWENPYHEH NVSEEISFQ
Sbjct: 200 MLAWENPYHEHANVSEEISFQ 220

[Close]
BLAST of Cla003459 vs. NCBI nr
Match: gi|778664226|ref|XP_011660247.1| (PREDICTED: uncharacterized protein LOC101209123 isoform X4 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 7.2e-38
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 1  MNGLTGHKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSDPTFQRLIFIT 60
          MNGLTG KMQRIFKALVHESVYNDARSL+EYCCFRFLSRDSSNIHPSLS+PTFQRLIFIT
Sbjct: 1  MNGLTGQKMQRIFKALVHESVYNDARSLIEYCCFRFLSRDSSNIHPSLSEPTFQRLIFIT 60

Query: 61 MLAWENPYHEHTNVSEEISFQ 82
          MLAWENPYHEH NVSEEISFQ
Sbjct: 61 MLAWENPYHEHANVSEEISFQ 81

[Close]
BLAST of Cla003459 vs. NCBI nr
Match: gi|659086615|ref|XP_008444028.1| (PREDICTED: uncharacterized protein LOC103487477 [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 4.6e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 1   MNGLTGHKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSDPTFQRLIFIT 60
           MNGLTG KMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLS+PTFQRLIFIT
Sbjct: 140 MNGLTGQKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSEPTFQRLIFIT 199

Query: 61  MLAWENPYHEHTNVSEEISFQ 82
           MLAWENPYH+H +VSEEISFQ
Sbjct: 200 MLAWENPYHDHASVSEEISFQ 220

[Close]
BLAST of Cla003459 vs. NCBI nr
Match: gi|645223807|ref|XP_008218811.1| (PREDICTED: uncharacterized protein LOC103319093 [Prunus mume])

HSP 1 Score: 135.2 bits (339), Expect = 6.1e-29
Identity = 66/82 (80.49%), Postives = 71/82 (86.59%), Query Frame = 1 

Query: 1   MNGLTGHKMQRIFKALVHESVYNDARSLVEYCCFRFLSRDSSNIHPSLSDPTFQRLIFIT 60
           MNGLTG KMQRIFKALV ES YNDAR+LVEYCCFRFLSRD+S+IHPSL +P FQRLIFIT
Sbjct: 141 MNGLTGQKMQRIFKALVSESTYNDARNLVEYCCFRFLSRDNSDIHPSLKEPAFQRLIFIT 200

Query: 61  MLAWENPYHEH-TNVSEEISFQ 82
           MLAWENPY E   N SE+ SFQ
Sbjct: 201 MLAWENPYREDLANGSEKASFQ 222

The following BLAST results are available for this feature:
BLAST of Cla003459 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M096_CUCSA1.8e-4094.19Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665360 PE=4 SV=1[more]
M5XJZ8_PRUPE4.2e-2980.49Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002078mg PE=4 SV=1[more]
A5BC42_VITVI2.3e-2770.11Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041585 PE=4 SV=1[more]
A0A0R0IYB2_SOYBN3.0e-2776.83Uncharacterized protein OS=Glycine max GN=GLYMA_08G185700 PE=4 SV=1[more]
A0A0R0IP01_SOYBN3.0e-2776.83Uncharacterized protein OS=Glycine max GN=GLYMA_08G185700 PE=4 SV=1[more]
BLAST of Cla003459 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211628|gb|KGN66724.1|2.6e-4094.19hypothetical protein Csa_1G665360 [Cucumis sativus][more]
gi|778664216|ref|XP_011660244.1|7.2e-3895.06PREDICTED: uncharacterized protein LOC101209123 isoform X1 [Cucumis sativus][more]
gi|778664226|ref|XP_011660247.1|7.2e-3895.06PREDICTED: uncharacterized protein LOC101209123 isoform X4 [Cucumis sativus][more]
gi|659086615|ref|XP_008444028.1|4.6e-3793.83PREDICTED: uncharacterized protein LOC103487477 [Cucumis melo][more]
gi|645223807|ref|XP_008218811.1|6.1e-2980.49PREDICTED: uncharacterized protein LOC103319093 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006927DUF639
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU75791watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003459Cla003459.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU75791WMU75791transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006927Protein of unknown function DUF639PFAMPF04842DUF639coord: 1..79
score: 1.2
NoneNo IPR availablePANTHERPTHR31860FAMILY NOT NAMEDcoord: 1..96
score: 6.4
NoneNo IPR availablePANTHERPTHR31860:SF3SUBFAMILY NOT NAMEDcoord: 1..96
score: 6.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla003459Silver-seed gourdcarwmB0734
Cla003459Watermelon (97103) v2wmwmbB046
Cla003459Wax gourdwgowmB249
Cla003459Cucurbita moschata (Rifu)cmowmB070
Cla003459Cucurbita moschata (Rifu)cmowmB467
Cla003459Watermelon (Charleston Gray)wcgwmB011
Cla003459Cucurbita pepo (Zucchini)cpewmB631
Cla003459Bottle gourd (USVL1VR-Ls)lsiwmB228