Cla003424 (gene) Watermelon (97103) v1

Overview
NameCla003424
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 12821808 .. 12822080 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTTGCAATTGGGAAATTGAGTGACGACTACGATGAGCTAACGCAAGAAAACGCTGAGGTGACGAGTATTGCAAAGAAGCTCATAGAAGACCTTGGACAATCGTTCCGCGCCGAGGTAAGCACCTTGACTATTGAAGTTGCCAATCTTCGTAGTTTTGTAGAAGGTGAACTAGACGAGCTTCGAAGAGAGGTGAGCGACATACGGGGACAATGTCAAGCTCGCCGCAAGGCTAGTAGTCCGATGTCTATGTTGTGCATGAGATTGTGA

mRNA sequence

ATGCAAGTTGCAATTGGGAAATTGAGTGACGACTACGATGAGCTAACGCAAGAAAACGCTGAGGTGACGAGTATTGCAAAGAAGCTCATAGAAGACCTTGGACAATCGTTCCGCGCCGAGGTAAGCACCTTGACTATTGAAGTTGCCAATCTTCGTAGTTTTGTAGAAGGTGAACTAGACGAGCTTCGAAGAGAGGTGAGCGACATACGGGGACAATGTCAAGCTCGCCGCAAGGCTAGTAGTCCGATGTCTATGTTGTGCATGAGATTGTGA

Coding sequence (CDS)

ATGCAAGTTGCAATTGGGAAATTGAGTGACGACTACGATGAGCTAACGCAAGAAAACGCTGAGGTGACGAGTATTGCAAAGAAGCTCATAGAAGACCTTGGACAATCGTTCCGCGCCGAGGTAAGCACCTTGACTATTGAAGTTGCCAATCTTCGTAGTTTTGTAGAAGGTGAACTAGACGAGCTTCGAAGAGAGGTGAGCGACATACGGGGACAATGTCAAGCTCGCCGCAAGGCTAGTAGTCCGATGTCTATGTTGTGCATGAGATTGTGA

Protein sequence

MQVAIGKLSDDYDELTQENAEVTSIAKKLIEDLGQSFRAEVSTLTIEVANLRSFVEGELDELRREVSDIRGQCQARRKASSPMSMLCMRL
Homology
[Close]
BLAST of Cla003424 vs. TrEMBL
Match: A0A067JKJ0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26608 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1 

Query: 5  IGKLSDDYDELTQENAEVTSIAKKLIEDLGQSFRAEVSTLTIEVANLRSFVEGELDELRR 64
          +G+LS+  D + QEN E+T  AK +I +LG + R E+  L  EV  +R  +  E+  LR+
Sbjct: 19 VGELSEQLDNVVQENEEITRAAKDMILELGVALRQELQALANEVTEVRGIINSEVSALRK 78

Query: 65 EVSDIRGQCQARRKASSPMS 85
          EV  +R +C   ++ SSP S
Sbjct: 79 EVDALRSECWMHQRMSSPAS 98

[Close]
BLAST of Cla003424 vs. NCBI nr
Match: gi|659083321|ref|XP_008442289.1| (PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-11
Identity = 33/62 (53.23%), Postives = 52/62 (83.87%), Query Frame = 1 

Query: 1   MQVAIGKLSDDYDELTQENAEVTSIAKKLIEDLGQSFRAEVSTLTIEVANLRSFVEGELD 60
           +Q+A+G+LSD+++EL QENAE+TS+AK++IED+G++F+ E+  L   V  L++FVEGEL 
Sbjct: 58  VQLAVGRLSDNFEELVQENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELH 117

Query: 61  EL 63
           +L
Sbjct: 118 DL 119

[Close]
BLAST of Cla003424 vs. NCBI nr
Match: gi|659121350|ref|XP_008460615.1| (PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 32/62 (51.61%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 1  MQVAIGKLSDDYDELTQENAEVTSIAKKLIEDLGQSFRAEVSTLTIEVANLRSFVEGELD 60
          +Q+A+G+LS++++EL QENAE+TS+AK++IED+G++F+ E+  L   V  L++FVEGEL 
Sbjct: 4  VQLAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELASTVTTLKAFVEGELH 63

Query: 61 EL 63
           L
Sbjct: 64 NL 65

[Close]
BLAST of Cla003424 vs. NCBI nr
Match: gi|659068885|ref|XP_008446938.1| (PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 7.7e-10
Identity = 35/92 (38.04%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 1   MQVAIGKLSDDYDELTQENAEVTSIAKKLIEDLGQSFRAEVSTLTIEVANLRSFVEGELD 60
           +Q+A+G+LS++++EL  ENAE+TS+AK++IED+G++F+ E+  L   V  L++FVEGEL 
Sbjct: 58  VQLAVGRLSENFEELVLENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELH 117

Query: 61  ELRRE-------VSDIRGQCQARRKASSPMSM 86
            L  +       +  +  +C+++   S+  SM
Sbjct: 118 NLHTKSISFETRLDALCVECRSKHLGSNAPSM 149

[Close]
BLAST of Cla003424 vs. NCBI nr
Match: gi|643710121|gb|KDP24402.1| (hypothetical protein JCGZ_26608 [Jatropha curcas])

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1 

Query: 5  IGKLSDDYDELTQENAEVTSIAKKLIEDLGQSFRAEVSTLTIEVANLRSFVEGELDELRR 64
          +G+LS+  D + QEN E+T  AK +I +LG + R E+  L  EV  +R  +  E+  LR+
Sbjct: 19 VGELSEQLDNVVQENEEITRAAKDMILELGVALRQELQALANEVTEVRGIINSEVSALRK 78

Query: 65 EVSDIRGQCQARRKASSPMS 85
          EV  +R +C   ++ SSP S
Sbjct: 79 EVDALRSECWMHQRMSSPAS 98

The following BLAST results are available for this feature:
BLAST of Cla003424 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067JKJ0_JATCU1.7e-0838.75Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26608 PE=4 SV=1[more]
BLAST of Cla003424 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659083321|ref|XP_008442289.1|3.1e-1153.23PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo][more]
gi|659121350|ref|XP_008460615.1|1.6e-1051.61PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo][more]
gi|659068885|ref|XP_008446938.1|7.7e-1038.04PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo][more]
gi|643710121|gb|KDP24402.1|2.5e-0838.75hypothetical protein JCGZ_26608 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU12580watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003424Cla003424.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU12580WMU12580transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 52..72
score: -coord: 12..32
scor