Cla003418 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003418
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	50S ribosomal protein L19 (AHRD V1 ***- B6T8M1_MAIZE); contains Interpro domain(s) IPR001857 Ribosomal protein L19
Location	Chr1 : 12703536 .. 12704070 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCATCTCTACAAGGATCCACTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGGTATTCACATTTCTGAGTATTGTTGGAAAAGTAGTTTCATTTCATCTTCCATTTGTTTGCTTTCAATATATTGCTTTCTTTTCCCTACAGATTTTAGATAAGGAAGCTGTTGAGGAGGCAAAAGCACAAAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGTAAAGTTCAGTCAAATTATTATCATGTTGCATTACTTTCAGATAATGTTCTTATTCTAAACAGCAGTTGTAGATGAGGTTATGGAACAGTTTTTTGGCTTTTCTTGTTATGTGTGAACAGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGTTGGGATTGAGTCCCTCTTCCCTCTGTAA

mRNA sequence

ATGGAATCATCTCTACAAGGATCCACTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGATTTTAGATAAGGAAGCTGTTGAGGAGGCAAAAGCACAAAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGTTGGGATTGAGTCCCTCTTCCCTCTGTAA

Coding sequence (CDS)

ATGGAATCATCTCTACAAGGATCCACTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGATTTTAGATAAGGAAGCTGTTGAGGAGGCAAAAGCACAAAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGTTGGGATTGAGTCCCTCTTCCCTCTGTAA

Protein sequence

MESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL

Homology

[Close]

BLAST of Cla003418 vs. Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 9.8e-20
Identity = 46/77 (59.74%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 31  IMQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 90
           IM IL+K+AV  A+  R +P I+ G IVQ+++EVPENKRR+S  KGIVI+R+NAG++TT 
Sbjct: 122 IMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTI 181

Query: 91  RLRRLVAGVGIESLFPL 108
           R+RR++AGVG+E +FPL
Sbjct: 182 RIRRIIAGVGVEIVFPL 198

[Close]

BLAST of Cla003418 vs. Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.9e-19
Identity = 41/77 (53.25%), Postives = 64/77 (83.12%), Query Frame = 1


Query: 31  IMQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 90
           +M IL+++A+E A+  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 114 VMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 173

Query: 91  RLRRLVAGVGIESLFPL 108
           R+RR++AG+G+E +FP+
Sbjct: 174 RIRRIIAGIGVEIVFPI 190

[Close]

BLAST of Cla003418 vs. Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.4e-19
Identity = 41/77 (53.25%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 31  IMQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTF 90
           IM +L+K+A+E A+  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT 
Sbjct: 118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 177

Query: 91  RLRRLVAGVGIESLFPL 108
           R+RR++AG+G+E +FP+
Sbjct: 178 RIRRIIAGIGVEIVFPI 194

[Close]

BLAST of Cla003418 vs. Swiss-Prot
Match: RL19_RHOCS (50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.3e-11
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 30  HIMQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNT 89
           +I+Q L++E V +  A + IP   PG  V++ V+V E  R RV   +G+VIAR+NAGLN+
Sbjct: 2   NILQQLEQEQVAKLTAGKTIPAFSPGDTVRVNVKVVEGTRERVQAYEGVVIARKNAGLNS 61

Query: 90  TFRLRRLVAGVGIESLFPL 108
           +F +R++  G G+E +FPL
Sbjct: 62  SFTVRKISYGEGVERVFPL 80

[Close]

BLAST of Cla003418 vs. Swiss-Prot
Match: RL19_NOVAD (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain DSM 12444 / F199) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-10
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 1


Query: 30  HIMQILDKEAVEEAKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNT 89
           +++Q L+ EA+ E KA++EIPD + G  V++ V V E +R RV   +G+ IAR N GL +
Sbjct: 2   NLIQQLEAEAIAEFKAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGS 61

Query: 90  TFRLRRLVAGVGIESLFPL 108
            F +R++  G G+E +FPL
Sbjct: 62  NFTVRKISFGEGVERVFPL 80

[Close]

BLAST of Cla003418 vs. TrEMBL
Match: A0A0A0LV41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126060 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.2e-45
Identity = 97/107 (90.65%), Postives = 103/107 (96.26%), Query Frame = 1


Query: 1   MESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQL 60
           MES+LQGS AVDS I PRIKFKRLDKTSRHIMQILDKEAVEE KA+REIPDIKPGYIVQL
Sbjct: 266 MESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVKARREIPDIKPGYIVQL 325

Query: 61  KVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 108
           KVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVGIESLFPL
Sbjct: 326 KVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPL 372

[Close]

BLAST of Cla003418 vs. TrEMBL
Match: I1N0B6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G078700 PE=4 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 5.4e-41
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQL 60
           ++SS Q S+ ++ ++ PRIKFKRLDKT+RHIMQILDKEAVEE + QREIPDIKPGYIVQL
Sbjct: 97  VDSSSQDSSMLEPEVPPRIKFKRLDKTARHIMQILDKEAVEEVRGQREIPDIKPGYIVQL 156

Query: 61  KVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 108
           KVEVPENKRRVS +KGIVIARRNAGLNTTFR+RR VAGVGIESLFPL
Sbjct: 157 KVEVPENKRRVSIIKGIVIARRNAGLNTTFRIRRQVAGVGIESLFPL 203

[Close]

BLAST of Cla003418 vs. TrEMBL
Match: F6GTR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g09390 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 9.2e-41
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = 1


Query: 1   MESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQL 60
           + +S   S A  SD+ PRIKFKRLDKTS+HIMQILDKEAVEE +A+REIP+IKPGYIVQL
Sbjct: 104 ISASQDSSAAPVSDLAPRIKFKRLDKTSKHIMQILDKEAVEEVRAKREIPEIKPGYIVQL 163

Query: 61  KVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 108
           KVEVPENKRR S LKGIVIARRNAGLNTTFRLRRLVAGVG+ESLFPL
Sbjct: 164 KVEVPENKRRTSVLKGIVIARRNAGLNTTFRLRRLVAGVGVESLFPL 210

[Close]

BLAST of Cla003418 vs. TrEMBL
Match: I1KWY3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G265900 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 9.2e-41
Identity = 86/107 (80.37%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQL 60
           ++SS Q S+ ++ ++ PRIKFKRLDKT+RHIMQILDKEAVE+ + QREIPDIKPGYIVQL
Sbjct: 92  VDSSSQDSSTLEPEVPPRIKFKRLDKTARHIMQILDKEAVEDVRGQREIPDIKPGYIVQL 151

Query: 61  KVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 108
           KVEVPENKRRVS +KGIVIARRNAGLNTTFR+RR VAGVGIESLFPL
Sbjct: 152 KVEVPENKRRVSIIKGIVIARRNAGLNTTFRIRRQVAGVGIESLFPL 198

[Close]

BLAST of Cla003418 vs. TrEMBL
Match: V4SZB9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022242mg PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.2e-40
Identity = 87/107 (81.31%), Postives = 96/107 (89.72%), Query Frame = 1


Query: 1   MESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQL 60
           +ES+     A  SD+ PRIKFKRLDKT+RHIMQILDKEAVE  K+QREIPDIKPGYIVQL
Sbjct: 103 VESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQL 162

Query: 61  KVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 108
           KV +PENKRRVSTLKGIVIARRNAG++TTFRLRRLVAGVG+ESLFPL
Sbjct: 163 KVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 209

[Close]

BLAST of Cla003418 vs. NCBI nr
Match: gi|778659235|ref|XP_011654038.1| (PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.8e-45
Identity = 97/107 (90.65%), Postives = 103/107 (96.26%), Query Frame = 1


Query: 1   MESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQL 60
           MES+LQGS AVDS I PRIKFKRLDKTSRHIMQILDKEAVEE KA+REIPDIKPGYIVQL
Sbjct: 129 MESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVKARREIPDIKPGYIVQL 188

Query: 61  KVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 108
           KVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVGIESLFPL
Sbjct: 189 KVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPL 235

[Close]

BLAST of Cla003418 vs. NCBI nr
Match: gi|778659241|ref|XP_011654048.1| (PREDICTED: 50S ribosomal protein L19-1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.8e-45
Identity = 97/107 (90.65%), Postives = 103/107 (96.26%), Query Frame = 1


Query: 1   MESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQL 60
           MES+LQGS AVDS I PRIKFKRLDKTSRHIMQILDKEAVEE KA+REIPDIKPGYIVQL
Sbjct: 97  MESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVKARREIPDIKPGYIVQL 156

Query: 61  KVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 108
           KVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVGIESLFPL
Sbjct: 157 KVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPL 203

[Close]

BLAST of Cla003418 vs. NCBI nr
Match: gi|700209748|gb|KGN64844.1| (hypothetical protein Csa_1G126060 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.8e-45
Identity = 97/107 (90.65%), Postives = 103/107 (96.26%), Query Frame = 1


Query: 1   MESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQL 60
           MES+LQGS AVDS I PRIKFKRLDKTSRHIMQILDKEAVEE KA+REIPDIKPGYIVQL
Sbjct: 266 MESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVKARREIPDIKPGYIVQL 325

Query: 61  KVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 108
           KVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVGIESLFPL
Sbjct: 326 KVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPL 372

[Close]

BLAST of Cla003418 vs. NCBI nr
Match: gi|659071926|ref|XP_008462635.1| (PREDICTED: 50S ribosomal protein L19-2, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 9.7e-44
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 1


Query: 1   MESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQL 60
           M S+L GS AVDS I PRIKFKRLDKTSRHIMQILDKEAVEE KA REIPDIKPGYIVQL
Sbjct: 129 MGSALLGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVKAHREIPDIKPGYIVQL 188

Query: 61  KVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 108
           KVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVGIESLFPL
Sbjct: 189 KVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPL 235

[Close]

BLAST of Cla003418 vs. NCBI nr
Match: gi|659071924|ref|XP_008462626.1| (PREDICTED: 50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 9.7e-44
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 1


Query: 1   MESSLQGSTAVDSDITPRIKFKRLDKTSRHIMQILDKEAVEEAKAQREIPDIKPGYIVQL 60
           M S+L GS AVDS I PRIKFKRLDKTSRHIMQILDKEAVEE KA REIPDIKPGYIVQL
Sbjct: 130 MGSALLGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVKAHREIPDIKPGYIVQL 189

Query: 61  KVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL 108
           KVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVGIESLFPL
Sbjct: 190 KVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPL 236

The following BLAST results are available for this feature:

BLAST of Cla003418 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK19_SPIOL	9.8e-20	59.74	50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2	[more]
RK191_ARATH	4.9e-19	53.25	50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 ...	[more]
RK192_ARATH	6.4e-19	53.25	50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 ...	[more]
RL19_RHOCS	8.3e-11	44.30	50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]
RL19_NOVAD	1.4e-10	43.04	50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain DSM 12444 /...	[more]

BLAST of Cla003418 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV41_CUCSA	1.2e-45	90.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126060 PE=4 SV=1	[more]
I1N0B6_SOYBN	5.4e-41	81.31	Uncharacterized protein OS=Glycine max GN=GLYMA_18G078700 PE=4 SV=2	[more]
F6GTR3_VITVI	9.2e-41	82.24	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g09390 PE=4 SV=...	[more]
I1KWY3_SOYBN	9.2e-41	80.37	Uncharacterized protein OS=Glycine max GN=GLYMA_08G265900 PE=4 SV=1	[more]
V4SZB9_9ROSI	1.2e-40	81.31	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022242mg PE=4 SV=1	[more]

BLAST of Cla003418 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659235\|ref\|XP_011654038.1\|	1.8e-45	90.65	PREDICTED: 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativu...	[more]
gi\|778659241\|ref\|XP_011654048.1\|	1.8e-45	90.65	PREDICTED: 50S ribosomal protein L19-1, chloroplastic isoform X2 [Cucumis sativu...	[more]
gi\|700209748\|gb\|KGN64844.1\|	1.8e-45	90.65	hypothetical protein Csa_1G126060 [Cucumis sativus]	[more]
gi\|659071926\|ref\|XP_008462635.1\|	9.7e-44	88.79	PREDICTED: 50S ribosomal protein L19-2, chloroplastic-like isoform X2 [Cucumis m...	[more]
gi\|659071924\|ref\|XP_008462626.1\|	9.7e-44	88.79	PREDICTED: 50S ribosomal protein L19-2, chloroplastic-like isoform X1 [Cucumis m...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001857	Ribosomal_L19
IPR008991	Translation_prot_SH3-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU44701	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003418	Cla003418.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU44701	WMU44701	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PRINTS	PR00061	RIBOSOMALL19	coord: 36..65 score: 8.0E-5coord: 95..107 score: 8.
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 6..107 score: 3.8
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 39..107 score: 4.0
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 30..107 score: 1.91
None	No IPR available	PANTHER	PTHR15680:SF9	39S RIBOSOMAL PROTEIN L19, MITOCHONDRIAL	coord: 6..107 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003418	Cucurbita maxima (Rimu)	cmawmB165
Cla003418	Cucurbita maxima (Rimu)	cmawmB204
Cla003418	Cucurbita maxima (Rimu)	cmawmB387
Cla003418	Cucurbita maxima (Rimu)	cmawmB571
Cla003418	Cucurbita moschata (Rifu)	cmowmB151
Cla003418	Cucurbita moschata (Rifu)	cmowmB191
Cla003418	Cucurbita moschata (Rifu)	cmowmB379
Cla003418	Cucurbita moschata (Rifu)	cmowmB566
Cla003418	Melon (DHL92) v3.5.1	mewmB169
Cla003418	Watermelon (Charleston Gray)	wcgwmB156
Cla003418	Cucumber (Chinese Long) v2	cuwmB054
Cla003418	Cucurbita pepo (Zucchini)	cpewmB033
Cla003418	Cucurbita pepo (Zucchini)	cpewmB515
Cla003418	Cucurbita pepo (Zucchini)	cpewmB805
Cla003418	Bottle gourd (USVL1VR-Ls)	lsiwmB263
Cla003418	Cucumber (Gy14) v2	cgybwmB054
Cla003418	Melon (DHL92) v3.6.1	medwmB165
Cla003418	Silver-seed gourd	carwmB0157
Cla003418	Silver-seed gourd	carwmB0492
Cla003418	Cucumber (Chinese Long) v3	cucwmB060
Cla003418	Watermelon (97103) v2	wmwmbB248
Cla003418	Wax gourd	wgowmB499
Cla003418	Cucumber (Gy14) v1	cgywmB406