Cla003394 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003394
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Erwinia induced protein 2 (AHRD V1 ***- Q84XG6_SOLTU)
Location	Chr7 : 8489895 .. 8490287 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGGAATGGGTCGTTCTTGGTTACGCTGCCGCCGCCGAGGCAATCATGGTCCTTCTCTTGACTCTCCCAGGCCTCGATGGCCTCCGCAAAGGTCTAATCGCCGTCACTCGCAACCTTCTCAAGCCATTCCTCTCCGTCGTCCCCTTTTGCCTCTTCTTACTCATGGACATCTATTGGAAATACGAGACTCGCCCCACTTGCGAATCCGACTCCTGTACCCCTTCTGAGTACCTTCGCCACCAGAAATCGATCATGAAGAGCCAACGCAACGCGCTCTTGATCGCTGCGGCGCTTGTGTTCTACTGGCTGTTGTACTCTGTCACCCATTTGGTTGTTAAGGTTGAGCAATTGAACCAGCGTGTCGAGAGGTTGAAGAATCGGGATTGA

mRNA sequence

ATGGCGTTGGAATGGGTCGTTCTTGGTTACGCTGCCGCCGCCGAGGCAATCATGGTCCTTCTCTTGACTCTCCCAGGCCTCGATGGCCTCCGCAAAGGTCTAATCGCCGTCACTCGCAACCTTCTCAAGCCATTCCTCTCCGTCGTCCCCTTTTGCCTCTTCTTACTCATGGACATCTATTGGAAATACGAGACTCGCCCCACTTGCGAATCCGACTCCTGTACCCCTTCTGAGTACCTTCGCCACCAGAAATCGATCATGAAGAGCCAACGCAACGCGCTCTTGATCGCTGCGGCGCTTGTGTTCTACTGGCTGTTGTACTCTGTCACCCATTTGGTTGTTAAGGTTGAGCAATTGAACCAGCGTGTCGAGAGGTTGAAGAATCGGGATTGA

Coding sequence (CDS)

ATGGCGTTGGAATGGGTCGTTCTTGGTTACGCTGCCGCCGCCGAGGCAATCATGGTCCTTCTCTTGACTCTCCCAGGCCTCGATGGCCTCCGCAAAGGTCTAATCGCCGTCACTCGCAACCTTCTCAAGCCATTCCTCTCCGTCGTCCCCTTTTGCCTCTTCTTACTCATGGACATCTATTGGAAATACGAGACTCGCCCCACTTGCGAATCCGACTCCTGTACCCCTTCTGAGTACCTTCGCCACCAGAAATCGATCATGAAGAGCCAACGCAACGCGCTCTTGATCGCTGCGGCGCTTGTGTTCTACTGGCTGTTGTACTCTGTCACCCATTTGGTTGTTAAGGTTGAGCAATTGAACCAGCGTGTCGAGAGGTTGAAGAATCGGGATTGA

Protein sequence

MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIYWKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLNQRVERLKNRD

Homology

[Close]

BLAST of Cla003394 vs. TrEMBL
Match: A0A0A0KTU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G628640 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-66
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60
           MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGL+AVTRNLLKPFLSVVPFC+FLLMDIY
Sbjct: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLVAVTRNLLKPFLSVVPFCIFLLMDIY 60

Query: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120
           WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN
Sbjct: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120

Query: 121 QRVERLKNRD 131
           QRVERLKNRD
Sbjct: 121 QRVERLKNRD 130

[Close]

BLAST of Cla003394 vs. TrEMBL
Match: M5XN01_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013297mg PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.6e-63
Identity = 119/130 (91.54%), Postives = 128/130 (98.46%), Query Frame = 1


Query: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60
           MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGL+AVTRNLLKPFLSVVPFCLFLLMDIY
Sbjct: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLVAVTRNLLKPFLSVVPFCLFLLMDIY 60

Query: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120
           WKYETRP+CE DSCTPSE+LRHQKSIMKSQRNALLIA+AL+FYWLLY+VTHLV+++E LN
Sbjct: 61  WKYETRPSCEGDSCTPSEHLRHQKSIMKSQRNALLIASALIFYWLLYTVTHLVIRIEHLN 120

Query: 121 QRVERLKNRD 131
           QRVERLKNRD
Sbjct: 121 QRVERLKNRD 130

[Close]

BLAST of Cla003394 vs. TrEMBL
Match: B9SJ13_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0597570 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.6e-63
Identity = 120/130 (92.31%), Postives = 127/130 (97.69%), Query Frame = 1


Query: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60
           MALEWVVLGYAA AEAIMVLLLT+PGLDGLR+GLIAVTRNLLKPFLSVVPFCLFLLMDIY
Sbjct: 1   MALEWVVLGYAAGAEAIMVLLLTIPGLDGLRRGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60

Query: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120
           WKYETRPTCE DSCTPSE+LRHQKSIMKSQRNALLIA ALVFYWLLYSVTHLVVK+EQLN
Sbjct: 61  WKYETRPTCEGDSCTPSEHLRHQKSIMKSQRNALLIATALVFYWLLYSVTHLVVKIEQLN 120

Query: 121 QRVERLKNRD 131
           QR+ERLKN++
Sbjct: 121 QRIERLKNKE 130

[Close]

BLAST of Cla003394 vs. TrEMBL
Match: V4LH05_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015011mg PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-62
Identity = 117/130 (90.00%), Postives = 128/130 (98.46%), Query Frame = 1


Query: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60
           MALEWVVLGYAAAAEAIMV+LLT+PGLD LRKGLIAVTRNLLKPFLS++PFCLFLLMDIY
Sbjct: 1   MALEWVVLGYAAAAEAIMVILLTMPGLDALRKGLIAVTRNLLKPFLSIIPFCLFLLMDIY 60

Query: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120
           WKYETRP+C+ DSCTPSE+LRHQKSIMKSQRNALLIA+ALVFYW+LYSVTHLVVK+EQLN
Sbjct: 61  WKYETRPSCDGDSCTPSEHLRHQKSIMKSQRNALLIASALVFYWILYSVTHLVVKIEQLN 120

Query: 121 QRVERLKNRD 131
           QRVERLKN+D
Sbjct: 121 QRVERLKNKD 130

[Close]

BLAST of Cla003394 vs. TrEMBL
Match: D6BRE5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04746 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-62
Identity = 119/130 (91.54%), Postives = 128/130 (98.46%), Query Frame = 1


Query: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60
           MALEWVVLGYAA AEAIMVLLLT+PGLDGLR+GLIAVTRNLLKPFLSVVPFCLFLLMDIY
Sbjct: 1   MALEWVVLGYAAGAEAIMVLLLTIPGLDGLRRGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60

Query: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120
           WKYETRP+CE+DSCTPSE+LRHQKSIMKSQRNALLIA ALVFYWLLYSVT+LVVK+EQLN
Sbjct: 61  WKYETRPSCEADSCTPSEHLRHQKSIMKSQRNALLIATALVFYWLLYSVTNLVVKIEQLN 120

Query: 121 QRVERLKNRD 131
           QR+ERLKN+D
Sbjct: 121 QRIERLKNKD 130

[Close]

BLAST of Cla003394 vs. NCBI nr
Match: gi|778706984|ref|XP_004142369.2| (PREDICTED: uncharacterized protein LOC101213354 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-66
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60
           MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGL+AVTRNLLKPFLSVVPFC+FLLMDIY
Sbjct: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLVAVTRNLLKPFLSVVPFCIFLLMDIY 60

Query: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120
           WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN
Sbjct: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120

Query: 121 QRVERLKNRD 131
           QRVERLKNRD
Sbjct: 121 QRVERLKNRD 130

[Close]

BLAST of Cla003394 vs. NCBI nr
Match: gi|645229404|ref|XP_008221450.1| (PREDICTED: uncharacterized protein LOC103321430 [Prunus mume])

HSP 1 Score: 250.0 bits (637), Expect = 2.3e-63
Identity = 120/130 (92.31%), Postives = 128/130 (98.46%), Query Frame = 1


Query: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60
           MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGL+AVTRNLLKPFLSVVPFCLFLLMDIY
Sbjct: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLVAVTRNLLKPFLSVVPFCLFLLMDIY 60

Query: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120
           WKYETRP+CE DSCTPSE+LRHQKSIMKSQRNALLIAAAL+FYWLLY+VTHLV+++E LN
Sbjct: 61  WKYETRPSCEGDSCTPSEHLRHQKSIMKSQRNALLIAAALIFYWLLYTVTHLVIRIEHLN 120

Query: 121 QRVERLKNRD 131
           QRVERLKNRD
Sbjct: 121 QRVERLKNRD 130

[Close]

BLAST of Cla003394 vs. NCBI nr
Match: gi|255570039|ref|XP_002525982.1| (PREDICTED: uncharacterized protein LOC8277334 [Ricinus communis])

HSP 1 Score: 248.8 bits (634), Expect = 5.1e-63
Identity = 120/130 (92.31%), Postives = 127/130 (97.69%), Query Frame = 1


Query: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60
           MALEWVVLGYAA AEAIMVLLLT+PGLDGLR+GLIAVTRNLLKPFLSVVPFCLFLLMDIY
Sbjct: 1   MALEWVVLGYAAGAEAIMVLLLTIPGLDGLRRGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60

Query: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120
           WKYETRPTCE DSCTPSE+LRHQKSIMKSQRNALLIA ALVFYWLLYSVTHLVVK+EQLN
Sbjct: 61  WKYETRPTCEGDSCTPSEHLRHQKSIMKSQRNALLIATALVFYWLLYSVTHLVVKIEQLN 120

Query: 121 QRVERLKNRD 131
           QR+ERLKN++
Sbjct: 121 QRIERLKNKE 130

[Close]

BLAST of Cla003394 vs. NCBI nr
Match: gi|694320711|ref|XP_009351534.1| (PREDICTED: uncharacterized protein LOC103943064 [Pyrus x bretschneideri])

HSP 1 Score: 248.8 bits (634), Expect = 5.1e-63
Identity = 119/130 (91.54%), Postives = 128/130 (98.46%), Query Frame = 1


Query: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60
           MALEWVVLGYAAAAEAIMV+LLT+PGLDGLRKGL+ VTRNLLKPFLSVVPFCLFLLMDIY
Sbjct: 1   MALEWVVLGYAAAAEAIMVVLLTIPGLDGLRKGLVTVTRNLLKPFLSVVPFCLFLLMDIY 60

Query: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120
           WKYETRP+CE DSCTPSE+LRHQKSIMKSQRNALLIAAAL+FYWLLY+VTHLVV++EQLN
Sbjct: 61  WKYETRPSCEGDSCTPSEHLRHQKSIMKSQRNALLIAAALIFYWLLYTVTHLVVRIEQLN 120

Query: 121 QRVERLKNRD 131
           QRVERLKNRD
Sbjct: 121 QRVERLKNRD 130

[Close]

BLAST of Cla003394 vs. NCBI nr
Match: gi|596290030|ref|XP_007226115.1| (hypothetical protein PRUPE_ppa013297mg [Prunus persica])

HSP 1 Score: 248.8 bits (634), Expect = 5.1e-63
Identity = 119/130 (91.54%), Postives = 128/130 (98.46%), Query Frame = 1


Query: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLIAVTRNLLKPFLSVVPFCLFLLMDIY 60
           MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGL+AVTRNLLKPFLSVVPFCLFLLMDIY
Sbjct: 1   MALEWVVLGYAAAAEAIMVLLLTLPGLDGLRKGLVAVTRNLLKPFLSVVPFCLFLLMDIY 60

Query: 61  WKYETRPTCESDSCTPSEYLRHQKSIMKSQRNALLIAAALVFYWLLYSVTHLVVKVEQLN 120
           WKYETRP+CE DSCTPSE+LRHQKSIMKSQRNALLIA+AL+FYWLLY+VTHLV+++E LN
Sbjct: 61  WKYETRPSCEGDSCTPSEHLRHQKSIMKSQRNALLIASALIFYWLLYTVTHLVIRIEHLN 120

Query: 121 QRVERLKNRD 131
           QRVERLKNRD
Sbjct: 121 QRVERLKNRD 130

The following BLAST results are available for this feature:

BLAST of Cla003394 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTU7_CUCSA	2.0e-66	98.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G628640 PE=4 SV=1	[more]
M5XN01_PRUPE	3.6e-63	91.54	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013297mg PE=4 SV=1	[more]
B9SJ13_RICCO	3.6e-63	92.31	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0597570 PE=4 SV=1	[more]
V4LH05_EUTSA	1.8e-62	90.00	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015011mg PE=4 SV=1	[more]
D6BRE5_JATCU	1.8e-62	91.54	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04746 PE=2 SV=1	[more]

BLAST of Cla003394 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778706984\|ref\|XP_004142369.2\|	2.9e-66	98.46	PREDICTED: uncharacterized protein LOC101213354 [Cucumis sativus]	[more]
gi\|645229404\|ref\|XP_008221450.1\|	2.3e-63	92.31	PREDICTED: uncharacterized protein LOC103321430 [Prunus mume]	[more]
gi\|255570039\|ref\|XP_002525982.1\|	5.1e-63	92.31	PREDICTED: uncharacterized protein LOC8277334 [Ricinus communis]	[more]
gi\|694320711\|ref\|XP_009351534.1\|	5.1e-63	91.54	PREDICTED: uncharacterized protein LOC103943064 [Pyrus x bretschneideri]	[more]
gi\|596290030\|ref\|XP_007226115.1\|	5.1e-63	91.54	hypothetical protein PRUPE_ppa013297mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008417	BAP29/BAP31

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0008150	biological_process
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0070973	protein localization to endoplasmic reticulum exit site
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005887	integral component of plasma membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU31730	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU38587	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU49501	watermelon EST collection version 2.0	transcribed_cluster
WMU75418	watermelon EST collection version 2.0	transcribed_cluster
WMU76558	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003394	Cla003394.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU38587	WMU38587	transcribed_cluster
WMU31730	WMU31730	transcribed_cluster
WMU75418	WMU75418	transcribed_cluster
WMU49501	WMU49501	transcribed_cluster
WMU76558	WMU76558	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008417	B-cell receptor-associated protein 29/31	PANTHER	PTHR12701	BCR-ASSOCIATED PROTEIN, BAP	coord: 2..130 score: 5.7
None	No IPR available	unknown	Coil	Coil	coord: 109..129 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003394	Cla97C07G133980	Watermelon (97103) v2	wmwmbB167
Cla003394	Csa5G628640	Cucumber (Chinese Long) v2	cuwmB392
Cla003394	MELO3C026427	Melon (DHL92) v3.5.1	mewmB053
Cla003394	ClCG07G005860	Watermelon (Charleston Gray)	wcgwmB378
Cla003394	CSPI05G27950	Wild cucumber (PI 183967)	cpiwmB400
Cla003394	Cucsa.029910	Cucumber (Gy14) v1	cgywmB001
Cla003394	CmaCh04G010170	Cucurbita maxima (Rimu)	cmawmB687
Cla003394	CmaCh04G000710	Cucurbita maxima (Rimu)	cmawmB688
Cla003394	CmoCh04G000660	Cucurbita moschata (Rifu)	cmowmB680
Cla003394	CmoCh04G010940	Cucurbita moschata (Rifu)	cmowmB683
Cla003394	Lsi04G011110	Bottle gourd (USVL1VR-Ls)	lsiwmB309
Cla003394	Cp4.1LG01g06010	Cucurbita pepo (Zucchini)	cpewmB414
Cla003394	Cp4.1LG01g07420	Cucurbita pepo (Zucchini)	cpewmB416
Cla003394	CsGy5G027340	Cucumber (Gy14) v2	cgybwmB366
Cla003394	MELO3C026427.2	Melon (DHL92) v3.6.1	medwmB055
Cla003394	Carg22014	Silver-seed gourd	carwmB0167
Cla003394	Carg00127	Silver-seed gourd	carwmB0667
Cla003394	CsaV3_5G037070	Cucumber (Chinese Long) v3	cucwmB417
Cla003394	Bhi07G000326	Wax gourd	wgowmB545

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003394	Watermelon (97103) v2	wmwmbB180
Cla003394	Cucumber (Gy14) v1	cgywmB361
Cla003394	Watermelon (Charleston Gray)	wcgwmB365
Cla003394	Cucumber (Gy14) v2	cgybwmB364
Cla003394	Silver-seed gourd	carwmB0666
Cla003394	Cucumber (Chinese Long) v3	cucwmB415