Cla003356 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003356
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	ORF64c (Fragment) (AHRD V1 ***- D7MVM3_ARALL)
Location	Chr11 : 7345436 .. 7345642 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGGGTTCTGCCTTAGAGGGAAGCACCTGCACGAGTAGTGGTGGACGAAGCGGAAGCAAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTGA

mRNA sequence

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGGGTTCTGCCTTAGAGGGAAGCACCTGCACGAGTAGTGGTGGACGAAGCGGAAGCAAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTGA

Coding sequence (CDS)

ATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGGGTTCTGCCTTAGAGGGAAGCACCTGCACGAGTAGTGGTGGACGAAGCGGAAGCAAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTGA

Protein sequence

MNGAKRSAEAVGCKNASVGEGSALEGSTCTSSGGRSGSKNVGLSNANIGENPMPRKPKGSSARFVHGG

Homology

[Close]

BLAST of Cla003356 vs. TrEMBL
Match: A0A151RN55_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_034569 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MNGAKRSAEAVGCKNASVGEGSALEGSTCTSSGGRSGSKNVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGE SALEG TC SSGGRSGS+NVGLSNAN+GENPMPRKPKGS
Sbjct: 29 MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 88

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 89 SARFVHGG 96

[Close]

BLAST of Cla003356 vs. TrEMBL
Match: A0A151TSK6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_009222 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MNGAKRSAEAVGCKNASVGEGSALEGSTCTSSGGRSGSKNVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGE SALEG TC SSGGRSGS+NVGLSNAN+GENPMPRKPKGS
Sbjct: 29 MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 88

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 89 SARFVHGG 96

[Close]

BLAST of Cla003356 vs. TrEMBL
Match: A0A151R6Q7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_040463 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MNGAKRSAEAVGCKNASVGEGSALEGSTCTSSGGRSGSKNVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGE SALEG TC SSGGRSGS+NVGLSNAN+GENPMPRKPKGS
Sbjct: 1  MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 60

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 61 SARFVHGG 68

[Close]

BLAST of Cla003356 vs. TrEMBL
Match: A0A151R6X5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_040453 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MNGAKRSAEAVGCKNASVGEGSALEGSTCTSSGGRSGSKNVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGE SA EG TCTSSGGRSGS+NVGLSNAN+GENPMPRKPKGS
Sbjct: 1  MNGAKRSAEAVGCKNESVGERSASEGRTCTSSGGRSGSENVGLSNANVGENPMPRKPKGS 60

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 61 SARFVHGG 68

[Close]

BLAST of Cla003356 vs. TrEMBL
Match: A0A067L301_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00471 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.9e-26
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 1


Query: 1  MNGAKRSAEAVGCKNASVGEGSALEGSTCTSSGGRSGSKNVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKNASVGE SALEGST  S GGRSGS+NVGLSNANIGENPMPRKPKGS
Sbjct: 29 MNGAKRSAEAVGCKNASVGERSALEGSTRASRGGRSGSENVGLSNANIGENPMPRKPKGS 88

Query: 61 SARFVHGG 69
          SARFV GG
Sbjct: 89 SARFVRGG 96

[Close]

BLAST of Cla003356 vs. NCBI nr
Match: gi|1012326504|gb|KYP38300.1| (hypothetical protein KK1_040463 [Cajanus cajan])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MNGAKRSAEAVGCKNASVGEGSALEGSTCTSSGGRSGSKNVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGE SALEG TC SSGGRSGS+NVGLSNAN+GENPMPRKPKGS
Sbjct: 1  MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 60

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 61 SARFVHGG 68

[Close]

BLAST of Cla003356 vs. NCBI nr
Match: gi|1012326502|gb|KYP38298.1| (hypothetical protein KK1_040460 [Cajanus cajan])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MNGAKRSAEAVGCKNASVGEGSALEGSTCTSSGGRSGSKNVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGE SALEG TC SSGGRSGS+NVGLSNAN+GENPMPRKPKGS
Sbjct: 29 MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 88

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 89 SARFVHGG 96

[Close]

BLAST of Cla003356 vs. NCBI nr
Match: gi|1012332557|gb|KYP43984.1| (hypothetical protein KK1_034569 [Cajanus cajan])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MNGAKRSAEAVGCKNASVGEGSALEGSTCTSSGGRSGSKNVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGE SALEG TC SSGGRSGS+NVGLSNAN+GENPMPRKPKGS
Sbjct: 29 MNGAKRSAEAVGCKNESVGERSALEGRTCASSGGRSGSENVGLSNANVGENPMPRKPKGS 88

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 89 SARFVHGG 96

[Close]

BLAST of Cla003356 vs. NCBI nr
Match: gi|1012326495|gb|KYP38291.1| (hypothetical protein KK1_040453 [Cajanus cajan])

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MNGAKRSAEAVGCKNASVGEGSALEGSTCTSSGGRSGSKNVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKN SVGE SA EG TCTSSGGRSGS+NVGLSNAN+GENPMPRKPKGS
Sbjct: 1  MNGAKRSAEAVGCKNESVGERSASEGRTCTSSGGRSGSENVGLSNANVGENPMPRKPKGS 60

Query: 61 SARFVHGG 69
          SARFVHGG
Sbjct: 61 SARFVHGG 68

[Close]

BLAST of Cla003356 vs. NCBI nr
Match: gi|643736466|gb|KDP42772.1| (hypothetical protein JCGZ_00471 [Jatropha curcas])

HSP 1 Score: 124.0 bits (310), Expect = 9.9e-26
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 1


Query: 1  MNGAKRSAEAVGCKNASVGEGSALEGSTCTSSGGRSGSKNVGLSNANIGENPMPRKPKGS 60
          MNGAKRSAEAVGCKNASVGE SALEGST  S GGRSGS+NVGLSNANIGENPMPRKPKGS
Sbjct: 29 MNGAKRSAEAVGCKNASVGERSALEGSTRASRGGRSGSENVGLSNANIGENPMPRKPKGS 88

Query: 61 SARFVHGG 69
          SARFV GG
Sbjct: 89 SARFVRGG 96

The following BLAST results are available for this feature:

BLAST of Cla003356 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151RN55_CAJCA	1.6e-27	91.18	Uncharacterized protein OS=Cajanus cajan GN=KK1_034569 PE=4 SV=1	[more]
A0A151TSK6_CAJCA	1.6e-27	91.18	Uncharacterized protein OS=Cajanus cajan GN=KK1_009222 PE=4 SV=1	[more]
A0A151R6Q7_CAJCA	1.6e-27	91.18	Uncharacterized protein OS=Cajanus cajan GN=KK1_040463 PE=4 SV=1	[more]
A0A151R6X5_CAJCA	2.2e-27	91.18	Uncharacterized protein OS=Cajanus cajan GN=KK1_040453 PE=4 SV=1	[more]
A0A067L301_JATCU	6.9e-26	91.18	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00471 PE=4 SV=1	[more]

BLAST of Cla003356 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012326504\|gb\|KYP38300.1\|	2.4e-27	91.18	hypothetical protein KK1_040463 [Cajanus cajan]	[more]
gi\|1012326502\|gb\|KYP38298.1\|	2.4e-27	91.18	hypothetical protein KK1_040460 [Cajanus cajan]	[more]
gi\|1012332557\|gb\|KYP43984.1\|	2.4e-27	91.18	hypothetical protein KK1_034569 [Cajanus cajan]	[more]
gi\|1012326495\|gb\|KYP38291.1\|	3.1e-27	91.18	hypothetical protein KK1_040453 [Cajanus cajan]	[more]
gi\|643736466\|gb\|KDP42772.1\|	9.9e-26	91.18	hypothetical protein JCGZ_00471 [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003356	Cla003356.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003356	Watermelon (97103) v2	wmwmbB365
Cla003356	Wax gourd	wgowmB151
Cla003356	Cucurbita maxima (Rimu)	cmawmB771
Cla003356	Cucurbita moschata (Rifu)	cmowmB762
Cla003356	Wild cucumber (PI 183967)	cpiwmB160
Cla003356	Melon (DHL92) v3.5.1	mewmB427
Cla003356	Watermelon (Charleston Gray)	wcgwmB105
Cla003356	Cucumber (Chinese Long) v2	cuwmB158
Cla003356	Bottle gourd (USVL1VR-Ls)	lsiwmB113
Cla003356	Cucumber (Gy14) v2	cgybwmB150
Cla003356	Melon (DHL92) v3.6.1	medwmB417
Cla003356	Cucumber (Chinese Long) v3	cucwmB169