Cla003255 (gene) Watermelon (97103) v1

NameCla003255
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 32795326 .. 32795667 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAGCTTGTGGAACATGAGGAATGAAATTCGCTTCAAGAATGGTGTGTCTAATTTAGTTGCCCTCAAGTGCATGATTGAGGATCCTTTTCAACCCATGCCCTTGCTGTCTCTTCCTTCTCGCGCTCCATGTTGGTCTCCAATGAGCTTGGGTTTCTGGAAGCTGAATCTTGATGCGGCCTCGTCGAAGGAGCGTGGATTTGGTGGTCTTGAGTGGATTGTGCAAGATCATGATGGAAAAGAGATCCTGAGTAGTTCTCCTTTTACTAAGAAGAGTTGTGACATTAGCTTACTAGAACCTGAAGTCATTCTGAAAGGTTTGATCATGGTGCAACATTAA

mRNA sequence

ATGTGGAGCTTGTGGAACATGAGGAATGAAATTCGCTTCAAGAATGGTGTGTCTAATTTAGTTGCCCTCAAGTGCATGATTGAGGATCCTTTTCAACCCATGCCCTTGCTGTCTCTTCCTTCTCGCGCTCCATGTTGGTCTCCAATGAGCTTGGGTTTCTGGAAGCTGAATCTTGATGCGGCCTCGTCGAAGGAGCGTGGATTTGGTGGTCTTGAGTGGATTGTGCAAGATCATGATGGAAAAGAGATCCTGAGTAGTTCTCCTTTTACTAAGAAGAGTTGTGACATTAGCTTACTAGAACCTGAAGTCATTCTGAAAGGTTTGATCATGGTGCAACATTAA

Coding sequence (CDS)

ATGTGGAGCTTGTGGAACATGAGGAATGAAATTCGCTTCAAGAATGGTGTGTCTAATTTAGTTGCCCTCAAGTGCATGATTGAGGATCCTTTTCAACCCATGCCCTTGCTGTCTCTTCCTTCTCGCGCTCCATGTTGGTCTCCAATGAGCTTGGGTTTCTGGAAGCTGAATCTTGATGCGGCCTCGTCGAAGGAGCGTGGATTTGGTGGTCTTGAGTGGATTGTGCAAGATCATGATGGAAAAGAGATCCTGAGTAGTTCTCCTTTTACTAAGAAGAGTTGTGACATTAGCTTACTAGAACCTGAAGTCATTCTGAAAGGTTTGATCATGGTGCAACATTAA

Protein sequence

MWSLWNMRNEIRFKNGVSNLVALKCMIEDPFQPMPLLSLPSRAPCWSPMSLGFWKLNLDAASSKERGFGGLEWIVQDHDGKEILSSSPFTKKSCDISLLEPEVILKGLIMVQH
BLAST of Cla003255 vs. NCBI nr
Match: gi|985428689|ref|XP_015382610.1| (PREDICTED: uncharacterized protein LOC107175578 [Citrus sinensis])

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 37/117 (31.62%), Postives = 55/117 (47.01%), Query Frame = 1

Query: 2   WSLWNMRNEIRFKNGVSNLVALKCMIEDPFQPMPLLSLPSRA----------PCWSPMSL 61
           W +WN RNE+ FK    N  AL    E   +    +  P +             W+P   
Sbjct: 32  WMVWNARNEMLFKGKRENPQALVAKAEAVLEAYKRVQKPEQVRKESQQVQTQQVWNPPQN 91

Query: 62  GFWKLNLDAASSKERGFGGLEWIVQDHDGKEILSSSPFTKKSCDISLLEPEVILKGL 109
           GF K+N+DAA+S E+   GL  I++D  G  I ++   +K + D+S  E E +  GL
Sbjct: 92  GFVKVNVDAATSSEKHLAGLGAIIRDDQGTVIAAAIKISKFNGDVSFAEAETLEWGL 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|985428689|ref|XP_015382610.1|1.7e-0631.62PREDICTED: uncharacterized protein LOC107175578 [Citrus sinensis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003255Cla003255.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla003255ClCG09G020760Watermelon (Charleston Gray)wcgwmB008
The following gene(s) are paralogous to this gene:

None