Cla003252 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003252
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr9 : 32737014 .. 32737427 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTGGAGGAGACTTATAGACATAAGGTGGGGATAGGGATGGAGATGGGGGTGGGGGAGACTTGTAGACGTAAGGAGGGGGTGGTGATGGAGATCATGGAGGAGGAGATTTATAGACATAGGGAGGTGGTGGTGGGAACTTGTAGACAAAAGGAGGCGGTGGCAGCGATTTGTAGACTTAAGGAGGTGGAGGTGGAGATTGATAAATGTAAGGAGATGGAGGTGGTGGAGAATTGCAAACAAATGATGGCGGTGGAGATTTGTGGTGTTTATGTTTTGGCAGTGGTGGTGGCTTGTAGTGCTTATGTTTTGGTGGCGGTGGCTTATGGTGGCGGTGATATTTTAGCGGCGGTGGGGTGTGTAGTGATGATACTTTGGTGGAAAATCTTGGTGATGTTGATGCTTTGGTAA

mRNA sequence

ATGGTGGTGGAGGAGACTTATAGACATAAGGTGGGGATAGGGATGGAGATGGGGGTGGGGGAGACTTGTAGACGTAAGGAGGGGGTGGTGATGGAGATCATGGAGGAGGAGATTTATAGACATAGGGAGGTGGTGGTGGGAACTTGTAGACAAAAGGAGGCGGTGGCAGCGATTTGTAGACTTAAGGAGGTGGAGGTGGAGATTGATAAATGTAAGGAGATGGAGGTGGTGGAGAATTGCAAACAAATGATGGCGGTGGAGATTTGTGGTGTTTATGTTTTGGCAGTGGTGGTGGCTTGTAGTGCTTATGTTTTGGTGGCGGTGGCTTATGGTGGCGGTGATATTTTAGCGGCGGTGGGGTGTGTAGTGATGATACTTTGGTGGAAAATCTTGGTGATGTTGATGCTTTGGTAA

Coding sequence (CDS)

ATGGTGGTGGAGGAGACTTATAGACATAAGGTGGGGATAGGGATGGAGATGGGGGTGGGGGAGACTTGTAGACGTAAGGAGGGGGTGGTGATGGAGATCATGGAGGAGGAGATTTATAGACATAGGGAGGTGGTGGTGGGAACTTGTAGACAAAAGGAGGCGGTGGCAGCGATTTGTAGACTTAAGGAGGTGGAGGTGGAGATTGATAAATGTAAGGAGATGGAGGTGGTGGAGAATTGCAAACAAATGATGGCGGTGGAGATTTGTGGTGTTTATGTTTTGGCAGTGGTGGTGGCTTGTAGTGCTTATGTTTTGGTGGCGGTGGCTTATGGTGGCGGTGATATTTTAGCGGCGGTGGGGTGTGTAGTGATGATACTTTGGTGGAAAATCTTGGTGATGTTGATGCTTTGGTAA

Protein sequence

MVVEETYRHKVGIGMEMGVGETCRRKEGVVMEIMEEEIYRHREVVVGTCRQKEAVAAICRLKEVEVEIDKCKEMEVVENCKQMMAVEICGVYVLAVVVACSAYVLVAVAYGGGDILAAVGCVVMILWWKILVMLMLW

Homology

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BLAST of Cla003252 vs. TrEMBL
Match: A0A0A0LZN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1


Query: 1   MVVEETYRHKVGIGMEMGVGETCRRKEGVVMEIMEEEIYRHREVVVGTCRQKEAVAAICR 60
           MV EETY+HK  + MEM   ET + KE V ME++EEE Y+H+EVV     ++E       
Sbjct: 65  MVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHRGE 124

Query: 61  LKEVEVEIDKCKEMEVVENCKQMMAVEICGVYVLAVVV 99
           +    VE + CK    VE   +M+  EIC   V  V+V
Sbjct: 125 VVMEMVEEEICKHRGEVEEVMEMVEEEICKHMVAVVMV 162

[Close]

BLAST of Cla003252 vs. TrEMBL
Match: A0A0A0LZN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-05
Identity = 44/114 (38.60%), Postives = 60/114 (52.63%), Query Frame = 1


Query: 1   MVVEETYRHKVGIGMEMGVGETCRRKEGVVMEIMEEEIYRHREVV------VGTCRQKEA 60
           MV  ETY+HK  + M M   ET + KE V ME++EEE Y+H+EVV        T + KE 
Sbjct: 49  MVEGETYKHKEVVEMVMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHKEV 108

Query: 61  V------AAICRLK-EVEVEI---DKCKEMEVVENCKQMMAVEICGVYVLAVVV 99
           V        IC+ + EV +E+   + CK    VE   +M+  EIC   V  V+V
Sbjct: 109 VEMEMVEEEICKHRGEVVMEMVEEEICKHRGEVEEVMEMVEEEICKHMVAVVMV 162

HSP 2 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 1


Query: 1  MVVEETYRHKVGIGMEMGVGETCRRKEGVVMEIMEEEIYRHRE------VVVGTCRQKEA 60
          M V ET RH+  +  EM V ETCR +E VV E++  E Y+HRE      VVVGTC+ +E 
Sbjct: 1  MEVVETCRHREVVVREMEVVETCRHREVVVKEMVVVETYKHREVVVKEMVVVGTCKHREV 60

Query: 61 VAAICRLKEVEVEIDKCKEMEVVENCKQMMAV 87
          V     +KE+ V +  CK  EVV   K+M+ V
Sbjct: 61 V-----VKEM-VVVGTCKHREVV--VKEMVVV 84

[Close]

BLAST of Cla003252 vs. TrEMBL
Match: A0A0S3SDC3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G206400 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-03
Identity = 37/95 (38.95%), Postives = 49/95 (51.58%), Query Frame = 1


Query: 5   ETYRHKVGIGMEMGVGETCRRKEGVVMEIMEEEIYRHREVVV------GTCRQ-----KE 64
           ET RH+  +  EM V  TC+ +E VV E++  EI RHREVVV      GTC+      KE
Sbjct: 165 ETCRHREVVVREMLVVGTCKHREVVVREMVVVEICRHREVVVREMVEEGTCKHMAEVVKE 224

Query: 65  AVAAICRLKEVEVEIDKCKEMEVVENCKQMMAVEI 89
               +     VEVEI  C  ME +   ++ M V +
Sbjct: 225 REGVVTYKHRVEVEI--CNNMEGIYLHREEMVVMV 257

[Close]

BLAST of Cla003252 vs. NCBI nr
Match: gi|700211378|gb|KGN66474.1| (hypothetical protein Csa_1G613460 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1


Query: 1   MVVEETYRHKVGIGMEMGVGETCRRKEGVVMEIMEEEIYRHREVVVGTCRQKEAVAAICR 60
           MV EETY+HK  + MEM   ET + KE V ME++EEE Y+H+EVV     ++E       
Sbjct: 65  MVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHRGE 124

Query: 61  LKEVEVEIDKCKEMEVVENCKQMMAVEICGVYVLAVVV 99
           +    VE + CK    VE   +M+  EIC   V  V+V
Sbjct: 125 VVMEMVEEEICKHRGEVEEVMEMVEEEICKHMVAVVMV 162

[Close]

BLAST of Cla003252 vs. NCBI nr
Match: gi|700211378|gb|KGN66474.1| (hypothetical protein Csa_1G613460 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-05
Identity = 44/114 (38.60%), Postives = 60/114 (52.63%), Query Frame = 1


Query: 1   MVVEETYRHKVGIGMEMGVGETCRRKEGVVMEIMEEEIYRHREVV------VGTCRQKEA 60
           MV  ETY+HK  + M M   ET + KE V ME++EEE Y+H+EVV        T + KE 
Sbjct: 49  MVEGETYKHKEVVEMVMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHKEV 108

Query: 61  V------AAICRLK-EVEVEI---DKCKEMEVVENCKQMMAVEICGVYVLAVVV 99
           V        IC+ + EV +E+   + CK    VE   +M+  EIC   V  V+V
Sbjct: 109 VEMEMVEEEICKHRGEVVMEMVEEEICKHRGEVEEVMEMVEEEICKHMVAVVMV 162

HSP 2 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 1


Query: 1  MVVEETYRHKVGIGMEMGVGETCRRKEGVVMEIMEEEIYRHRE------VVVGTCRQKEA 60
          M V ET RH+  +  EM V ETCR +E VV E++  E Y+HRE      VVVGTC+ +E 
Sbjct: 1  MEVVETCRHREVVVREMEVVETCRHREVVVKEMVVVETYKHREVVVKEMVVVGTCKHREV 60

Query: 61 VAAICRLKEVEVEIDKCKEMEVVENCKQMMAV 87
          V     +KE+ V +  CK  EVV   K+M+ V
Sbjct: 61 V-----VKEM-VVVGTCKHREVV--VKEMVVV 84

[Close]

BLAST of Cla003252 vs. NCBI nr
Match: gi|965603602|dbj|BAT90779.1| (hypothetical protein VIGAN_06206400 [Vigna angularis var. angularis])

HSP 1 Score: 50.4 bits (119), Expect = 2.8e-03
Identity = 37/95 (38.95%), Postives = 49/95 (51.58%), Query Frame = 1


Query: 5   ETYRHKVGIGMEMGVGETCRRKEGVVMEIMEEEIYRHREVVV------GTCRQ-----KE 64
           ET RH+  +  EM V  TC+ +E VV E++  EI RHREVVV      GTC+      KE
Sbjct: 165 ETCRHREVVVREMLVVGTCKHREVVVREMVVVEICRHREVVVREMVEEGTCKHMAEVVKE 224

Query: 65  AVAAICRLKEVEVEIDKCKEMEVVENCKQMMAVEI 89
               +     VEVEI  C  ME +   ++ M V +
Sbjct: 225 REGVVTYKHRVEVEI--CNNMEGIYLHREEMVVMV 257

The following BLAST results are available for this feature:

BLAST of Cla003252 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZN4_CUCSA	1.3e-07	40.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1	[more]
A0A0A0LZN4_CUCSA	2.1e-05	38.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1	[more]
A0A0S3SDC3_PHAAN	2.0e-03	38.95	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G206400 PE=...	[more]

BLAST of Cla003252 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211378\|gb\|KGN66474.1\|	1.9e-07	40.82	hypothetical protein Csa_1G613460 [Cucumis sativus]	[more]
gi\|700211378\|gb\|KGN66474.1\|	3.0e-05	38.60	hypothetical protein Csa_1G613460 [Cucumis sativus]	[more]
gi\|965603602\|dbj\|BAT90779.1\|	2.8e-03	38.95	hypothetical protein VIGAN_06206400 [Vigna angularis var. angularis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003252	Cla003252.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003252	Cla97C09G182140	Watermelon (97103) v2	wmwmbB042
Cla003252	ClCG09G020730	Watermelon (Charleston Gray)	wcgwmB008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003252	Cucumber (Gy14) v1	cgywmB507
Cla003252	Cucurbita moschata (Rifu)	cmowmB131
Cla003252	Cucurbita moschata (Rifu)	cmowmB744
Cla003252	Wild cucumber (PI 183967)	cpiwmB369
Cla003252	Melon (DHL92) v3.5.1	mewmB003
Cla003252	Cucumber (Chinese Long) v2	cuwmB363
Cla003252	Bottle gourd (USVL1VR-Ls)	lsiwmB170
Cla003252	Cucumber (Gy14) v2	cgybwmB339
Cla003252	Melon (DHL92) v3.6.1	medwmB001
Cla003252	Cucumber (Chinese Long) v3	cucwmB387
Cla003252	Wax gourd	wgowmB117