Cla003212 (gene) Watermelon (97103) v1

Overview
NameCla003212
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCyst nematode resistance protein-like protein (AHRD V1 ***- Q6Z0B6_ORYSJ); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related
LocationChr2 : 33574672 .. 33575022 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTCCTCTAGCTGGCAGCCTCCAAGACACACTGAGGAGCCTGACTTAATCCTTTGGACCCCGGGTGATAAAGGATTTTTCTCCATTAAATCCCTGAAGCAGCTTCTGTCAGCATTTGAGAGTCTGCTCGATCAACTAGATATTGTGCAAGTGTGGACCTCCCTTATCCCCAAAAAGTGTAAGTTCTTCCTTTGGTCCCTCCATCATAGAAGCATCAACACCATTGATAAATGCCAATCTCGCTATTCCTCATTGGCTCTCAACCCCAACTGGTGTGTGCTTTGCAAAAGAGAGAATGAAGCATTGGAACATCTCTTTATCACTTGTACTTACACTCGGCAGGTTTAG

mRNA sequence

ATGATCTCCTCTAGCTGGCAGCCTCCAAGACACACTGAGGAGCCTGACTTAATCCTTTGGACCCCGGGTGATAAAGGATTTTTCTCCATTAAATCCCTGAAGCAGCTTCTGTCAGCATTTGAGAGTCTGCTCGATCAACTAGATATTGTGCAAGTGTGGACCTCCCTTATCCCCAAAAAGTGTAAGTTCTTCCTTTGGTCCCTCCATCATAGAAGCATCAACACCATTGATAAATGCCAATCTCGCTATTCCTCATTGGCTCTCAACCCCAACTGGTGTGTGCTTTGCAAAAGAGAGAATGAAGCATTGGAACATCTCTTTATCACTTGTACTTACACTCGGCAGGTTTAG

Coding sequence (CDS)

ATGATCTCCTCTAGCTGGCAGCCTCCAAGACACACTGAGGAGCCTGACTTAATCCTTTGGACCCCGGGTGATAAAGGATTTTTCTCCATTAAATCCCTGAAGCAGCTTCTGTCAGCATTTGAGAGTCTGCTCGATCAACTAGATATTGTGCAAGTGTGGACCTCCCTTATCCCCAAAAAGTGTAAGTTCTTCCTTTGGTCCCTCCATCATAGAAGCATCAACACCATTGATAAATGCCAATCTCGCTATTCCTCATTGGCTCTCAACCCCAACTGGTGTGTGCTTTGCAAAAGAGAGAATGAAGCATTGGAACATCTCTTTATCACTTGTACTTACACTCGGCAGGTTTAG

Protein sequence

MISSSWQPPRHTEEPDLILWTPGDKGFFSIKSLKQLLSAFESLLDQLDIVQVWTSLIPKKCKFFLWSLHHRSINTIDKCQSRYSSLALNPNWCVLCKRENEALEHLFITCTYTRQV
Homology
[Close]
BLAST of Cla003212 vs. TrEMBL
Match: A5AFR7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.7e-12
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 1 

Query: 20  WTPGDKGFFSIKSLKQLLSAFESLLDQLDIVQVWTSLIPKKCKFFLWSLHHRSINTIDKC 79
           W+    G FS+KS    LS   + L  L    +W+S +P K K   W + H  +NT DK 
Sbjct: 870 WSLSSSGSFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKL 929

Query: 80  QSRYSSLALNPNWCVLCKRENEALEHLFITCTYT 114
           Q R    AL P WC+LCKR  E+++HLF+ C  T
Sbjct: 930 QLRRPYKALCPQWCILCKRNGESIDHLFLHCPVT 963

[Close]
BLAST of Cla003212 vs. TrEMBL
Match: A5B978_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037520 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.7e-12
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 1 

Query: 20   WTPGDKGFFSIKSLKQLLSAFESLLDQLDIVQVWTSLIPKKCKFFLWSLHHRSINTIDKC 79
            W+    G FS+KS    LS   + L  L    +W+S +P K K   W + H  +NT DK 
Sbjct: 1719 WSLSSSGSFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKL 1778

Query: 80   QSRYSSLALNPNWCVLCKRENEALEHLFITCTYT 114
            Q R    AL P WC+LCKR  E+++HLF+ C  T
Sbjct: 1779 QLRRPYKALCPQWCILCKRNGESIDHLFLHCPVT 1812

[Close]
BLAST of Cla003212 vs. TrEMBL
Match: A5BZG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042643 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.7e-12
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 1 

Query: 20  WTPGDKGFFSIKSLKQLLSAFESLLDQLDIVQVWTSLIPKKCKFFLWSLHHRSINTIDKC 79
           W+    G FS+KS    LS   + L  L    +W+S +P K K   W + H  +NT DK 
Sbjct: 521 WSLSSSGSFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKL 580

Query: 80  QSRYSSLALNPNWCVLCKRENEALEHLFITCTYT 114
           Q R    AL P WC+LCKR  E+++HLF+ C  T
Sbjct: 581 QLRRPYKALCPQWCILCKRNGESIDHLFLHCPVT 614

[Close]
BLAST of Cla003212 vs. TrEMBL
Match: A5BPI6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 37/99 (37.37%), Postives = 52/99 (52.53%), Query Frame = 1 

Query: 15   PDLILWTPGDKGFFSIKSLKQLLSAFESLLDQLDIVQVWTSLIPKKCKFFLWSLHHRSIN 74
            PD   W+    G F++KS    LS    L        VW S +P K KFF+W + H+ +N
Sbjct: 1125 PDKRSWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLVWNSQVPFKIKFFVWLVAHKKVN 1184

Query: 75   TIDKCQSRYSSLALNPNWCVLCKRENEALEHLFITCTYT 114
            T D  Q R    AL+P+ C+LC    E ++HLF+ C+ T
Sbjct: 1185 TNDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSMT 1223

[Close]
BLAST of Cla003212 vs. TrEMBL
Match: A5BUT3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026823 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-11
Identity = 37/97 (38.14%), Postives = 50/97 (51.55%), Query Frame = 1 

Query: 15   PDLILWTPGDKGFFSIKSLKQLLSAFESLLDQLDIVQVWTSLIPKKCKFFLWSLHHRSIN 74
            PD  LW     G FS+KS    LS             VW S +P K K F+W + H+ +N
Sbjct: 1640 PDARLWPLSSSGLFSVKSFFLALSQSSGSSQNFPSKFVWNSQVPFKVKSFVWLVAHKKVN 1699

Query: 75   TIDKCQSRYSSLALNPNWCVLCKRENEALEHLFITCT 112
            T D  Q R    AL+PN C+LC +  E+ +HLF+ C+
Sbjct: 1700 TNDMLQVRRPYKALSPNICILCMKHGESTDHLFLHCS 1736

[Close]
BLAST of Cla003212 vs. NCBI nr
Match: gi|659071582|ref|XP_008460744.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 6.7e-14
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = 1 

Query: 20  WTPGDKGFFSIKSLKQLLSAFESLLDQLDIVQ------VWTSLIPKKCKFFLWSLHHRSI 79
           W     G FSI S+K+ L++ E  +D    +Q      +W S IPK+CKFF+W+L H  I
Sbjct: 120 WKLNSNGGFSIASVKKALNSIE--IDDNIAIQASTFNSLWKSEIPKRCKFFIWTLIHECI 179

Query: 80  NTIDKCQSRYSSLALNPNWCVLCKRENEALEHLFITCTYTRQV 117
           NT +K Q R  +  L P WC +CK   E + HLFI C Y + +
Sbjct: 180 NTAEKLQKRLPNYNLCPQWCSMCKSNAEDINHLFIQCPYAQTI 220

[Close]
BLAST of Cla003212 vs. NCBI nr
Match: gi|659093714|ref|XP_008447678.1| (PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-13
Identity = 47/125 (37.60%), Postives = 60/125 (48.00%), Query Frame = 1 

Query: 4   SSWQP------PRHTEEPDLILWTPGDKGFFSIKSLKQL------LSAFESLLDQLDIVQ 63
           S+W P      PR    P    W P  K  F I S K        LS     +  LD++ 
Sbjct: 290 SNWSPEGNLPVPRTNRGPSKPTWIPDSKKSFFIASAKSCIYHQPELSIANPRVKLLDLI- 349

Query: 64  VWTSLIPKKCKFFLWSLHHRSINTIDKCQSRYSSLALNPNWCVLCKRENEALEHLFITCT 117
            W S IP K KFFLW L  R +NT++  Q R  +  L PNWCVLCK+++E   HLF  C 
Sbjct: 350 -WKSFIPMKIKFFLWCLVQRKLNTMEVIQQRMPNSLLQPNWCVLCKKDSETGAHLFFHCD 409

[Close]
BLAST of Cla003212 vs. NCBI nr
Match: gi|659086627|ref|XP_008444035.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-13
Identity = 46/111 (41.44%), Postives = 58/111 (52.25%), Query Frame = 1 

Query: 9   PRHTEEPDLILWTPGDKGFFSIKSLKQLLSAFESLLDQ---------LDIVQVWTSLIPK 68
           PR         WTP     FS  S K L+S     LDQ         L+I+  W S IP 
Sbjct: 265 PRSNRGSSKPTWTPDSNNSFSTASAKVLISR---QLDQSPGDPRAKLLEII--WKSTIPM 324

Query: 69  KCKFFLWSLHHRSINTIDKCQSRYSSLALNPNWCVLCKRENEALEHLFITC 111
           K KFF+W L  R INT++  Q R  ++ L PNWCVLCK++NE+  HL + C
Sbjct: 325 KIKFFMWCLIQRRINTMEVIQQRMPNIPLQPNWCVLCKKDNESGTHLLLRC 370

[Close]
BLAST of Cla003212 vs. NCBI nr
Match: gi|659122972|ref|XP_008461420.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1 

Query: 19  LWTPGDKGFFSIKSLKQLLSAFESLLDQLDI-----VQVWTSLIPKKCKFFLWSLHHRSI 78
           LW       F   S+K+ L+  E+ +   +        +W    PKKCKFF+W+L H  I
Sbjct: 208 LWKLNSNNIFDTASVKRALA--EAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCI 267

Query: 79  NTIDKCQSRYSSLALNPNWCVLCKRENEALEHLFITCTYTRQV 117
           NT D+ Q R  +  L+PNWC +C +  E + HLFI C Y++Q+
Sbjct: 268 NTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQL 308

[Close]
BLAST of Cla003212 vs. NCBI nr
Match: gi|147838572|emb|CAN74312.1| (hypothetical protein VITISV_037520 [Vitis vinifera])

HSP 1 Score: 78.6 bits (192), Expect = 8.2e-12
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 1 

Query: 20   WTPGDKGFFSIKSLKQLLSAFESLLDQLDIVQVWTSLIPKKCKFFLWSLHHRSINTIDKC 79
            W+    G FS+KS    LS   + L  L    +W+S +P K K   W + H  +NT DK 
Sbjct: 1719 WSLSSSGSFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKL 1778

Query: 80   QSRYSSLALNPNWCVLCKRENEALEHLFITCTYT 114
            Q R    AL P WC+LCKR  E+++HLF+ C  T
Sbjct: 1779 QLRRPYKALCPQWCILCKRNGESIDHLFLHCPVT 1812

The following BLAST results are available for this feature:
BLAST of Cla003212 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AFR7_VITVI5.7e-1240.43Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1[more]
A5B978_VITVI5.7e-1240.43Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037520 PE=4 SV=1[more]
A5BZG3_VITVI5.7e-1240.43Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042643 PE=4 SV=1[more]
A5BPI6_VITVI9.7e-1237.37Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1[more]
A5BUT3_VITVI2.2e-1138.14Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026823 PE=4 SV=1[more]
BLAST of Cla003212 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071582|ref|XP_008460744.1|6.7e-1440.78PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659093714|ref|XP_008447678.1|2.5e-1337.60PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo][more]
gi|659086627|ref|XP_008444035.1|5.7e-1341.44PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659122972|ref|XP_008461420.1|2.1e-1236.89PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|147838572|emb|CAN74312.1|8.2e-1240.43hypothetical protein VITISV_037520 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003212Cla003212.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 46..116
score: 3.9
NoneNo IPR availablePANTHERPTHR25952FAMILY NOT NAMEDcoord: 10..116
score: 1.5
NoneNo IPR availablePANTHERPTHR25952:SF191PROTEIN T12G3.2, ISOFORM Dcoord: 10..116
score: 1.5