Cla003101 (gene) Watermelon (97103) v1

NameCla003101
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 14671435 .. 14672193 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTAAATAGTGTTATTGCCAACAAAACTCTGTGTCGGCCGATGAGAGGATCACAACATCAATCAGAGCCCACCAAGGCCAGCAAAGGATCCCATCAGCCAGCACCCCCAGCTGAATCACTTCCAAAGCCGTCAAAGAGGAAAGAAAATGGGAACTCATCCAAACTAAAACGCAAGACTGTGGCAAGGCCTGATGCCACCATTAGAACTTCCCCTTCTTCAAGTCCTTCGCCCCCACTCCCATTGACTACCAGAGAGCCAACGCCTCCCCCACCTCCTCCAGAAACGCAACCTCAACCATCCACTTTCCCATCAATCCAAACTTCTTCTTCTTCCTTTTTTCAAAGAGTTGATGACTCACACTATGGGGATTTTGGCGCGACAACTATGCGTCCATCATCCCCTGCGTTTGACGAAACTCCATCAACCTCTTGCCCCCAACCAAACCGTCCTCACCCACAACTGCAGCCTCAACCTCAAGAAGCTCAACTTGACCTTGACTGGGAGACAGTGCAAGCATACCTACAACAACCAATCTTGCGTCCAATGATGCATTCAATAAATATGTTAGCACGTCGGCAGATGGAGCAGTTTCACTTCACATTGAATTATATTCATCAACTGTTTTCGATTCGTCCGGAAGTCCTGCCCCCTAACATTCCTGAACGCCTACCACATATGCTTGTCTTCCCAATGCCGCAACGCCGTGCACCTGAGCAGCAATGCAGACCTGATGAAGACAAGTCGGATAGTTAA

mRNA sequence

ATGGAGGTAAATAGTGTTATTGCCAACAAAACTCTGTGTCGGCCGATGAGAGGATCACAACATCAATCAGAGCCCACCAAGGCCAGCAAAGGATCCCATCAGCCAGCACCCCCAGCTGAATCACTTCCAAAGCCGTCAAAGAGGAAAGAAAATGGGAACTCATCCAAACTAAAACGCAAGACTGTGGCAAGGCCTGATGCCACCATTAGAACTTCCCCTTCTTCAAGTCCTTCGCCCCCACTCCCATTGACTACCAGAGAGCCAACGCCTCCCCCACCTCCTCCAGAAACGCAACCTCAACCATCCACTTTCCCATCAATCCAAACTTCTTCTTCTTCCTTTTTTCAAAGAGTTGATGACTCACACTATGGGGATTTTGGCGCGACAACTATGCGTCCATCATCCCCTGCGTTTGACGAAACTCCATCAACCTCTTGCCCCCAACCAAACCGTCCTCACCCACAACTGCAGCCTCAACCTCAAGAAGCTCAACTTGACCTTGACTGGGAGACAGTGCAAGCATACCTACAACAACCAATCTTGCGTCCAATGATGCATTCAATAAATATGTTAGCACGTCGGCAGATGGAGCAGTTTCACTTCACATTGAATTATATTCATCAACTGTTTTCGATTCGTCCGGAAGTCCTGCCCCCTAACATTCCTGAACGCCTACCACATATGCTTGTCTTCCCAATGCCGCAACGCCGTGCACCTGAGCAGCAATGCAGACCTGATGAAGACAAGTCGGATAGTTAA

Coding sequence (CDS)

ATGGAGGTAAATAGTGTTATTGCCAACAAAACTCTGTGTCGGCCGATGAGAGGATCACAACATCAATCAGAGCCCACCAAGGCCAGCAAAGGATCCCATCAGCCAGCACCCCCAGCTGAATCACTTCCAAAGCCGTCAAAGAGGAAAGAAAATGGGAACTCATCCAAACTAAAACGCAAGACTGTGGCAAGGCCTGATGCCACCATTAGAACTTCCCCTTCTTCAAGTCCTTCGCCCCCACTCCCATTGACTACCAGAGAGCCAACGCCTCCCCCACCTCCTCCAGAAACGCAACCTCAACCATCCACTTTCCCATCAATCCAAACTTCTTCTTCTTCCTTTTTTCAAAGAGTTGATGACTCACACTATGGGGATTTTGGCGCGACAACTATGCGTCCATCATCCCCTGCGTTTGACGAAACTCCATCAACCTCTTGCCCCCAACCAAACCGTCCTCACCCACAACTGCAGCCTCAACCTCAAGAAGCTCAACTTGACCTTGACTGGGAGACAGTGCAAGCATACCTACAACAACCAATCTTGCGTCCAATGATGCATTCAATAAATATGTTAGCACGTCGGCAGATGGAGCAGTTTCACTTCACATTGAATTATATTCATCAACTGTTTTCGATTCGTCCGGAAGTCCTGCCCCCTAACATTCCTGAACGCCTACCACATATGCTTGTCTTCCCAATGCCGCAACGCCGTGCACCTGAGCAGCAATGCAGACCTGATGAAGACAAGTCGGATAGTTAA

Protein sequence

MEVNSVIANKTLCRPMRGSQHQSEPTKASKGSHQPAPPAESLPKPSKRKENGNSSKLKRKTVARPDATIRTSPSSSPSPPLPLTTREPTPPPPPPETQPQPSTFPSIQTSSSSFFQRVDDSHYGDFGATTMRPSSPAFDETPSTSCPQPNRPHPQLQPQPQEAQLDLDWETVQAYLQQPILRPMMHSINMLARRQMEQFHFTLNYIHQLFSIRPEVLPPNIPERLPHMLVFPMPQRRAPEQQCRPDEDKSDS
BLAST of Cla003101 vs. Swiss-Prot
Match: FH3_ORYSJ (Formin-like protein 3 OS=Oryza sativa subsp. japonica GN=FH3 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-06
Identity = 26/81 (32.10%), Postives = 34/81 (41.98%), Query Frame = 1

Query: 25  PTKASKGSHQPAPPAESLPKPSKRKENGNSSKLKRKTVARPDATIRTSPSSSPSPPLPLT 84
           P   + G   P+ P    P P   + NG S+         P A  + +P + P PPL   
Sbjct: 699 PANRTNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTG 758

Query: 85  TREPTPPPPPPETQPQPSTFP 106
            + P PPPPPP+    P T P
Sbjct: 759 KKAPAPPPPPPQAPKPPGTVP 779


HSP 2 Score: 36.6 bits (83), Expect = 4.8e-01
Identity = 32/120 (26.67%), Postives = 39/120 (32.50%), Query Frame = 1

Query: 37  PPAESLPKPSKRKENGNSSKLKRKTVARPDATIRTSPSSSPSPPLPLTTREPTPPPPPPE 96
           PP      PS RK            +  P  T   +P   P PP P +  +P   PPPP 
Sbjct: 521 PPEVQHESPSDRK------------LPSPSPTA-AAPPPPPPPPPPPSGNKPAFSPPPPP 580

Query: 97  TQPQPSTFPSIQTSSSSFFQRVDDSHYGDFGATTMRPSSPAFDETPSTSCPQPNRPHPQL 156
             P P   P    +SS            +    +  P  P     P+ S P P  P P L
Sbjct: 581 PPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPL 627


HSP 3 Score: 33.5 bits (75), Expect = 4.1e+00
Identity = 30/115 (26.09%), Postives = 36/115 (31.30%), Query Frame = 1

Query: 41  SLPKPSKRKENGNSSKLKRKTVARPDATIRTSPSSSPSP-PLPLTTREPTPPPPPPETQP 100
           S+  P+     G+ S L       P      SPS    P P P     P PPPPPP    
Sbjct: 497 SVLPPTTPPPCGSLSILSTDENQLPPEVQHESPSDRKLPSPSPTAAAPPPPPPPPPPPSG 556

Query: 101 QPSTFPSIQTSSSSFFQRVDDSHYGDFGATTMRPSSPAFDETPSTSCPQPNRPHP 155
               F             +  S+Y    A++  P  P     P+   P P  P P
Sbjct: 557 NKPAFSPPPPPPPPPPPPLPQSNY----ASSQPPPPPPPPPLPNCLVPSPPPPPP 607

BLAST of Cla003101 vs. Swiss-Prot
Match: PEXLP_TOBAC (Pistil-specific extensin-like protein OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.5e-06
Identity = 32/92 (34.78%), Postives = 39/92 (42.39%), Query Frame = 1

Query: 73  PSSSPSPPLPLTTREPTPPPPPPETQPQPSTFPSIQTSSSSFFQRVDDSHYGDFGA---- 132
           PS  PSPP P     P+PPPP P + P PST P I   +  F   +  S   DF      
Sbjct: 64  PSPLPSPPPP----SPSPPPPSP-SPPPPSTIPLIPPFTGGFLPPLPGSKLPDFAGLLPL 123

Query: 133 TTMRPSSPAFDETPSTSCPQPNRPHPQLQPQP 161
               P  P     P  + P+P+ P P ++P P
Sbjct: 124 IPNLPDVPPIGGGPPVNQPKPSSPSPLVKPPP 150


HSP 2 Score: 42.0 bits (97), Expect = 1.2e-02
Identity = 35/128 (27.34%), Postives = 47/128 (36.72%), Query Frame = 1

Query: 38  PAESLPKPSKRKENGNSSKLKRKTVARPDATIRTSP--SSSPSPPLPLTTREPTPPPPPP 97
           P  + PKPS       S     K    P +  + SP   S+  PP P   ++P+PPPPPP
Sbjct: 132 PPVNQPKPS-------SPSPLVKPPPPPPSPCKPSPPDQSAKQPPQPPPAKQPSPPPPPP 191

Query: 98  ETQPQPSTFPSIQTSSSSFFQRVDDSHYGDFGATTMRPSSPAFDETPSTSCPQPNRPHPQ 157
             +  PS  P+ Q        +           T   P  P   ++P    P P    P 
Sbjct: 192 PVK-APSPSPAKQPPPPPPPVKAPSPSPATQPPTKQPPPPPRAKKSPLLPPPPPVAYPPV 251

Query: 158 LQPQPQEA 164
           + P P  A
Sbjct: 252 MTPSPSPA 251

BLAST of Cla003101 vs. TrEMBL
Match: A0A0B7NNZ5_9FUNG (Uncharacterized protein OS=Parasitella parasitica GN=PARPA_11363.1 scaffold 44017 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.1e-07
Identity = 61/205 (29.76%), Postives = 88/205 (42.93%), Query Frame = 1

Query: 23  SEPTKASKG-------SHQPAP-PAESL-PKPSKRKENGNSSKLKRKTVA---RPDATIR 82
           S+PT  S+        SH  +P P+ SL P P  + ++   SK    + +    P  +  
Sbjct: 804 SDPTACSESTLAAHPSSHSISPLPSPSLSPSPLSQSQSLAQSKAPSPSPSPSPSPSPSAL 863

Query: 83  TSPSSSPSPPLPLTTREPTPPPPPPETQPQPSTFPSIQTSSSSFFQRVDDSHYGDFGAT- 142
            SPS SPSPP P     P PPPPPP   P  S+F +I++SS+S           D  AT 
Sbjct: 864 ASPSPSPSPPPPPPPPPPPPPPPPPPPPPVFSSFTNIKSSSNSL----------DLSATG 923

Query: 143 TMRPSSPAFDETPSTSCPQPNRPHPQL-----QPQPQEAQLDL---DWETVQ-AYLQQPI 202
              P +P    T +T    P  P   L     +P   +A+  L   +WE +  A +QQ I
Sbjct: 924 HQSPPAPPNSSTTNTPASSPPLPPAFLGATGRKPSAFQAKQKLKFVEWEKMNFANIQQTI 983

Query: 203 LRPMMHSINMLARRQMEQFHFTLNY 206
                 +I     +Q+E     + Y
Sbjct: 984 WNEFERNIESSLHKQVESSDSIMEY 998

BLAST of Cla003101 vs. NCBI nr
Match: gi|758360537|emb|CEP17073.1| (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 63.5 bits (153), Expect = 5.9e-07
Identity = 61/205 (29.76%), Postives = 88/205 (42.93%), Query Frame = 1

Query: 23  SEPTKASKG-------SHQPAP-PAESL-PKPSKRKENGNSSKLKRKTVA---RPDATIR 82
           S+PT  S+        SH  +P P+ SL P P  + ++   SK    + +    P  +  
Sbjct: 804 SDPTACSESTLAAHPSSHSISPLPSPSLSPSPLSQSQSLAQSKAPSPSPSPSPSPSPSAL 863

Query: 83  TSPSSSPSPPLPLTTREPTPPPPPPETQPQPSTFPSIQTSSSSFFQRVDDSHYGDFGAT- 142
            SPS SPSPP P     P PPPPPP   P  S+F +I++SS+S           D  AT 
Sbjct: 864 ASPSPSPSPPPPPPPPPPPPPPPPPPPPPVFSSFTNIKSSSNSL----------DLSATG 923

Query: 143 TMRPSSPAFDETPSTSCPQPNRPHPQL-----QPQPQEAQLDL---DWETVQ-AYLQQPI 202
              P +P    T +T    P  P   L     +P   +A+  L   +WE +  A +QQ I
Sbjct: 924 HQSPPAPPNSSTTNTPASSPPLPPAFLGATGRKPSAFQAKQKLKFVEWEKMNFANIQQTI 983

Query: 203 LRPMMHSINMLARRQMEQFHFTLNY 206
                 +I     +Q+E     + Y
Sbjct: 984 WNEFERNIESSLHKQVESSDSIMEY 998

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
FH3_ORYSJ1.7e-0632.10Formin-like protein 3 OS=Oryza sativa subsp. japonica GN=FH3 PE=2 SV=2[more]
PEXLP_TOBAC8.5e-0634.78Pistil-specific extensin-like protein OS=Nicotiana tabacum PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0B7NNZ5_9FUNG4.1e-0729.76Uncharacterized protein OS=Parasitella parasitica GN=PARPA_11363.1 scaffold 4401... [more]
Match NameE-valueIdentityDescription
gi|758360537|emb|CEP17073.1|5.9e-0729.76hypothetical protein [Parasitella parasitica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003101Cla003101.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla003101Cla000108Watermelon (97103) v1wmwmB005
The following block(s) are covering this gene:
GeneOrganismBlock
Cla003101Watermelon (97103) v2wmwmbB311
Cla003101Watermelon (Charleston Gray)wcgwmB075
Cla003101Bottle gourd (USVL1VR-Ls)lsiwmB381